Wall clock time and date at job start Tue Mar 31 2020 05:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39635 * 120.24593 * 264.85183 * 3 2 1 5 5 Cl 1.73606 * 120.01806 * 359.96223 * 4 3 2 6 6 C 1.38127 * 119.96265 * 179.97438 * 4 3 2 7 7 C 1.38561 * 120.46066 * 0.02562 * 6 4 3 8 8 C 1.37940 * 120.50261 * 0.25239 * 7 6 4 9 9 C 1.39549 * 120.02180 * 359.49618 * 8 7 6 10 10 C 1.47578 * 120.22795 * 180.23106 * 9 8 7 11 11 C 1.39441 * 120.79409 * 64.99151 * 10 9 8 12 12 N 1.31629 * 120.64427 * 179.73214 * 11 10 9 13 13 C 1.32233 * 122.52321 * 0.58077 * 12 11 10 14 14 C 1.36482 * 121.53307 * 359.68638 * 13 12 11 15 15 C 1.41127 * 119.11185 * 0.02562 * 14 13 12 16 16 C 1.40867 * 121.11133 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99814 * 204.19298 * 16 15 14 18 18 C 1.40226 * 120.00004 * 24.19004 * 16 15 14 19 19 N 1.30654 * 119.99812 * 14.30108 * 18 16 15 20 20 Si 1.86803 * 120.00089 * 194.29620 * 18 16 15 21 21 H 1.48501 * 109.46973 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47268 * 120.00524 * 20 18 16 23 23 H 1.48501 * 109.47096 * 240.00510 * 20 18 16 24 24 H 1.08002 * 119.77588 * 180.02562 * 6 4 3 25 25 H 1.08000 * 119.75386 * 179.97438 * 7 6 4 26 26 H 1.07993 * 119.98984 * 179.72112 * 8 7 6 27 27 H 1.08001 * 119.67681 * 0.02562 * 11 10 9 28 28 H 1.07999 * 119.23338 * 179.70233 * 13 12 11 29 29 H 1.08001 * 120.44125 * 180.02562 * 14 13 12 30 30 H 0.97010 * 119.99523 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2713 0.1092 1.2014 5 17 2.4102 0.2451 2.7027 6 6 4.6526 0.1087 1.1946 7 6 5.3491 0.0015 0.0017 8 6 4.6737 -0.1010 -1.1967 9 6 3.2783 -0.1079 -1.2133 10 6 2.5511 -0.2224 -2.4924 11 6 2.6442 -1.3793 -3.2654 12 7 1.9901 -1.4803 -4.4032 13 6 1.2310 -0.5062 -4.8758 14 6 1.0760 0.6696 -4.2004 15 6 1.7429 0.8474 -2.9694 16 6 1.6123 2.0436 -2.2369 17 1 2.3832 2.3367 -1.5395 18 6 0.4814 2.8538 -2.4133 19 7 -0.5699 2.3828 -3.0297 20 14 0.4780 4.6064 -1.7668 21 1 1.7797 4.8953 -1.1130 22 1 0.2710 5.5497 -2.8949 23 1 -0.6191 4.7675 -0.7791 24 1 5.1935 0.1924 2.1257 25 1 6.4291 0.0027 0.0096 26 1 5.2249 -0.1796 -2.1220 27 1 3.2551 -2.2022 -2.9248 28 1 0.7217 -0.6443 -5.8181 29 1 0.4513 1.4535 -4.6026 30 1 -1.3524 2.9432 -3.1513 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244734261.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:17 Heat of formation + Delta-G solvation = 66.579847 kcal Electronic energy + Delta-G solvation = -19031.253532 eV Core-core repulsion = 16009.680763 eV Total energy + Delta-G solvation = -3021.572769 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 284.041 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.45277 -38.02147 -36.28338 -35.55297 -34.31013 -32.32971 -30.76757 -30.35333 -28.59169 -26.16438 -23.58731 -22.92844 -21.57541 -20.57329 -18.38882 -17.71016 -16.21105 -15.74856 -15.42425 -14.65403 -14.49611 -14.44092 -13.97157 -13.58744 -12.88145 -12.70579 -12.45859 -12.34198 -12.17619 -12.03501 -11.66951 -11.53970 -11.36535 -11.31481 -11.10052 -11.03835 -10.77727 -10.40065 -9.97381 -9.60963 -8.70295 -8.51225 -8.17446 -7.97643 -7.66834 -7.00269 -4.79106 1.08337 1.40563 2.21509 2.54870 2.70023 2.94147 2.98972 3.13519 3.49782 3.55999 3.73541 4.34238 4.49110 4.55861 5.01688 5.24559 5.40286 5.49511 5.56060 5.70366 5.83760 6.05778 6.24687 6.32513 6.51305 6.65454 6.73725 6.78895 6.96992 7.01048 7.18257 7.33807 7.66309 7.90652 8.26225 8.36610 8.52919 8.55399 9.48076 9.86259 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.013114 B = 0.008662 C = 0.006414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.556394 B = 3231.666407 C = 4364.199928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C 0.265 3.735 3 C -0.007 4.007 4 C 0.002 3.998 5 Cl -0.071 7.071 6 C -0.135 4.135 7 C -0.085 4.085 8 C -0.121 4.121 9 C 0.089 3.911 10 C -0.268 4.268 11 C 0.143 3.857 12 N -0.578 5.578 13 C 0.084 3.916 14 C -0.206 4.206 15 C 0.152 3.848 16 C -0.435 4.435 17 H 0.084 0.916 18 C 0.080 3.920 19 N -0.763 5.763 20 Si 0.905 3.095 21 H -0.255 1.255 22 H -0.267 1.267 23 H -0.270 1.270 24 H 0.134 0.866 25 H 0.132 0.868 26 H 0.134 0.866 27 H 0.124 0.876 28 H 0.119 0.881 29 H 0.130 0.870 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.284 -0.144 6.147 11.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.077 5.077 2 C -0.050 4.050 3 C -0.012 4.012 4 C -0.027 4.027 5 Cl -0.042 7.042 6 C -0.154 4.154 7 C -0.104 4.104 8 C -0.139 4.139 9 C 0.085 3.915 10 C -0.274 4.274 11 C -0.017 4.017 12 N -0.292 5.292 13 C -0.063 4.063 14 C -0.228 4.228 15 C 0.144 3.856 16 C -0.465 4.465 17 H 0.102 0.898 18 C -0.143 4.143 19 N -0.386 5.386 20 Si 0.728 3.272 21 H -0.178 1.178 22 H -0.192 1.192 23 H -0.195 1.195 24 H 0.152 0.848 25 H 0.150 0.850 26 H 0.152 0.848 27 H 0.141 0.859 28 H 0.137 0.863 29 H 0.148 0.852 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.198 -0.831 5.659 9.194 hybrid contribution 0.071 1.725 0.867 1.932 sum 7.269 0.894 6.526 9.809 Atomic orbital electron populations 1.81061 1.11917 1.07444 1.07246 1.24907 0.92126 0.94349 0.93652 1.16096 0.85560 1.07302 0.92192 1.20852 0.92457 1.03708 0.85662 1.98366 1.77408 1.96291 1.32095 1.20815 0.90980 1.04256 0.99357 1.21122 0.99974 0.97736 0.91551 1.21443 0.93070 1.01008 0.98389 1.18684 0.91945 0.89920 0.90928 1.19342 1.13075 0.98201 0.96782 1.22059 0.95262 0.94317 0.90062 1.67327 1.13805 1.32516 1.15585 1.21753 0.95686 0.90488 0.98325 1.21995 1.05407 0.99201 0.96197 1.17654 0.86956 0.90578 0.90366 1.19609 1.03995 1.03070 1.19817 0.89806 1.26016 0.94477 1.00475 0.93309 1.69708 1.02621 1.36891 1.29387 0.86271 0.80124 0.81129 0.79670 1.17790 1.19200 1.19495 0.84833 0.85019 0.84797 0.85892 0.86350 0.85221 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -9.74 18.54 41.84 0.78 -8.96 16 2 C 0.27 5.88 11.87 -22.47 -0.27 5.62 16 3 C -0.01 -0.14 5.29 -106.40 -0.56 -0.70 16 4 C 0.00 0.04 6.34 -39.10 -0.25 -0.21 16 5 Cl -0.07 -1.07 28.02 -51.86 -1.45 -2.52 16 6 C -0.14 -1.70 9.81 -39.50 -0.39 -2.09 16 7 C -0.08 -1.01 10.02 -39.57 -0.40 -1.40 16 8 C -0.12 -1.78 9.74 -39.20 -0.38 -2.16 16 9 C 0.09 1.67 4.50 -104.55 -0.47 1.20 16 10 C -0.27 -5.91 4.73 -104.07 -0.49 -6.41 16 11 C 0.14 3.09 10.92 -17.19 -0.19 2.90 16 12 N -0.58 -13.46 10.31 -13.34 -0.14 -13.60 16 13 C 0.08 1.95 11.09 -18.01 -0.20 1.75 16 14 C -0.21 -5.08 8.73 -39.12 -0.34 -5.42 16 15 C 0.15 3.73 5.24 -106.24 -0.56 3.17 16 16 C -0.44 -10.58 7.07 -37.84 -0.27 -10.84 16 17 H 0.08 2.00 7.18 -52.48 -0.38 1.62 16 18 C 0.08 1.90 5.25 -17.31 -0.09 1.81 16 19 N -0.76 -18.75 10.79 55.56 0.60 -18.15 16 20 Si 0.90 18.10 29.58 -169.99 -5.03 13.07 16 21 H -0.25 -5.00 7.11 56.52 0.40 -4.60 16 22 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 24 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 25 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 26 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 27 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 28 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 29 H 0.13 3.26 6.12 -52.49 -0.32 2.94 16 30 H 0.29 6.44 8.29 -40.82 -0.34 6.10 16 LS Contribution 291.06 15.07 4.39 4.39 Total: -1.00 -27.89 291.06 -7.66 -35.54 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -1.95 Total: 3.02 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -4.85 Total: -12.78 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 1.24 Total: -40.72 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.45 Total: -2.52 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.89 -7.66 -35.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244734261.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.123 kcal (2) G-P(sol) polarization free energy of solvation -27.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds