Wall clock time and date at job start Tue Mar 31 2020 05:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38138 * 120.02057 * 2 1 4 4 C 1.38247 * 120.08386 * 180.25049 * 3 2 1 5 5 C 1.38427 * 120.13073 * 359.49890 * 4 3 2 6 6 Cl 1.73599 * 119.97631 * 180.25221 * 5 4 3 7 7 C 1.38204 * 120.04556 * 0.27018 * 5 4 3 8 8 C 1.38872 * 120.02682 * 179.76930 * 2 1 3 9 9 N 1.39861 * 120.06463 * 359.97438 * 8 2 1 10 10 C 1.34776 * 120.00073 * 134.87508 * 9 8 2 11 11 S 1.71204 * 120.00132 * 4.69049 * 10 9 8 12 12 N 1.34780 * 119.99927 * 184.68668 * 10 9 8 13 13 C 1.46499 * 119.99759 * 0.02562 * 12 10 9 14 14 C 1.37049 * 119.99720 * 180.02562 * 12 10 9 15 15 H 1.07999 * 119.99950 * 323.66842 * 14 12 10 16 16 C 1.38886 * 119.99437 * 143.66974 * 14 12 10 17 17 N 1.31479 * 119.99408 * 161.48880 * 16 14 12 18 18 Si 1.86803 * 120.00205 * 341.48188 * 16 14 12 19 19 H 1.48494 * 109.46775 * 95.22609 * 18 16 14 20 20 H 1.48497 * 109.47045 * 215.22647 * 18 16 14 21 21 H 1.48495 * 109.47084 * 335.22600 * 18 16 14 22 22 H 1.09000 * 109.47135 * 270.23059 * 1 2 3 23 23 H 1.08997 * 109.47403 * 30.23517 * 1 2 3 24 24 H 1.09001 * 109.46853 * 150.23693 * 1 2 3 25 25 H 1.08002 * 119.95794 * 359.97438 * 3 2 1 26 26 H 1.07999 * 119.93434 * 179.76774 * 4 3 2 27 27 H 1.07998 * 120.03957 * 179.97438 * 7 5 4 28 28 H 0.97003 * 119.99692 * 314.87215 * 9 8 2 29 29 H 1.08995 * 109.47055 * 88.59691 * 13 12 10 30 30 H 1.09010 * 109.46590 * 208.59257 * 13 12 10 31 31 H 1.08999 * 109.47141 * 328.59498 * 13 12 10 32 32 H 0.97005 * 119.99461 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1961 0.0000 4 6 3.5806 1.1976 -0.0052 5 6 4.2768 0.0012 0.0000 6 17 6.0128 0.0078 0.0000 7 6 3.5909 -1.1986 0.0048 8 6 2.2020 -1.2023 0.0048 9 7 1.5046 -2.4147 0.0103 10 6 1.8821 -3.4129 -0.8128 11 16 3.2862 -3.2424 -1.7775 12 7 1.1543 -4.5456 -0.8763 13 6 -0.0474 -4.6913 -0.0512 14 6 1.5385 -5.5609 -1.7129 15 1 1.9758 -5.3327 -2.6736 16 6 1.3655 -6.8832 -1.3249 17 7 1.3818 -7.8401 -2.2264 18 14 1.1098 -7.3020 0.4775 19 1 -0.3444 -7.4047 0.7602 20 1 1.7661 -8.5988 0.7822 21 1 1.7043 -6.2356 1.3226 22 1 -0.3633 0.0041 1.0277 23 1 -0.3634 0.8878 -0.5175 24 1 -0.3633 -0.8921 -0.5102 25 1 1.6578 2.1312 -0.0004 26 1 4.1185 2.1341 -0.0090 27 1 4.1341 -2.1320 0.0085 28 1 0.7492 -2.5370 0.6064 29 1 -0.9086 -4.2978 -0.5910 30 1 -0.2092 -5.7460 0.1719 31 1 0.0817 -4.1387 0.8794 32 1 1.2613 -8.7637 -1.9555 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245149676.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:45 Heat of formation + Delta-G solvation = 56.919342 kcal Electronic energy + Delta-G solvation = -17797.648221 eV Core-core repulsion = 14911.100493 eV Total energy + Delta-G solvation = -2886.547728 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.045 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.93238 -38.29071 -36.25947 -35.00725 -32.63980 -32.28079 -29.57987 -27.91896 -26.70327 -25.59308 -22.78062 -21.33021 -20.85838 -18.58110 -17.72507 -16.91702 -16.19514 -15.49587 -15.37367 -14.63702 -14.37402 -13.90553 -13.79926 -13.26688 -13.24015 -13.12598 -12.66901 -12.46547 -12.36074 -12.14465 -11.42299 -11.31559 -11.07418 -10.87489 -10.80128 -10.58452 -10.28302 -10.09023 -9.59986 -8.96530 -8.40172 -7.94744 -6.93882 -6.74287 -5.94116 -4.44358 1.34065 1.62005 2.36419 2.51106 2.72711 2.91174 2.96211 3.05275 3.65855 3.72757 3.92653 4.07401 4.58483 4.94186 5.07959 5.09089 5.27901 5.42925 5.45076 5.55380 5.66236 5.69311 5.83800 6.01934 6.11322 6.42807 6.54917 6.63496 6.80956 6.89289 7.26160 7.42829 7.93005 8.16246 8.62417 8.76068 10.15554 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.022280 B = 0.005586 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.417764 B = 5011.548515 C = 5723.824458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.105 4.105 3 C -0.113 4.113 4 C -0.118 4.118 5 C -0.037 4.037 6 Cl -0.080 7.080 7 C -0.056 4.056 8 C 0.170 3.830 9 N -0.659 5.659 10 C 0.457 3.543 11 S -0.694 6.694 12 N -0.377 5.377 13 C 0.037 3.963 14 C -0.296 4.296 15 H 0.141 0.859 16 C 0.069 3.931 17 N -0.821 5.821 18 Si 0.886 3.114 19 H -0.269 1.269 20 H -0.276 1.276 21 H -0.261 1.261 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.127 0.873 26 H 0.126 0.874 27 H 0.164 0.836 28 H 0.394 0.606 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.345 12.349 9.313 16.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.108 4.108 3 C -0.133 4.133 4 C -0.138 4.138 5 C -0.067 4.067 6 Cl -0.051 7.051 7 C -0.081 4.081 8 C 0.073 3.927 9 N -0.291 5.291 10 C 0.101 3.899 11 S -0.556 6.556 12 N -0.064 5.064 13 C -0.109 4.109 14 C -0.428 4.428 15 H 0.159 0.841 16 C -0.145 4.145 17 N -0.452 5.452 18 Si 0.713 3.287 19 H -0.197 1.197 20 H -0.202 1.202 21 H -0.186 1.186 22 H 0.085 0.915 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.145 0.855 26 H 0.144 0.856 27 H 0.181 0.819 28 H 0.233 0.767 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.389 11.952 8.505 15.056 hybrid contribution -1.160 -0.600 1.494 1.984 sum -4.549 11.352 9.999 15.797 Atomic orbital electron populations 1.20699 0.91254 1.03040 1.01830 1.19776 0.95995 0.91966 1.03097 1.20539 0.93107 0.96782 1.02858 1.20881 0.94071 0.96537 1.02281 1.20550 0.84109 0.94501 1.07506 1.98336 1.10701 1.98945 1.97111 1.21643 0.93234 0.98816 0.94443 1.16948 0.90430 0.83617 1.01656 1.41787 1.34867 1.12177 1.40299 1.21805 0.91555 0.85190 0.91316 1.92598 1.19199 1.88443 1.55361 1.43079 1.17563 1.12865 1.32921 1.22447 0.89521 1.03647 0.95275 1.19692 1.40950 0.82673 0.99457 0.84140 1.25456 0.94953 0.95269 0.98780 1.69696 1.39927 1.01449 1.34088 0.86810 0.77969 0.79590 0.84347 1.19660 1.20239 1.18558 0.91477 0.91240 0.91767 0.85526 0.85633 0.81887 0.76738 0.90537 0.90203 0.91797 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.56 36.01 0.34 -0.87 16 2 C -0.10 -1.47 5.90 -104.42 -0.62 -2.08 16 3 C -0.11 -1.43 9.70 -39.62 -0.38 -1.81 16 4 C -0.12 -1.61 9.83 -39.51 -0.39 -2.00 16 5 C -0.04 -0.61 6.32 -39.52 -0.25 -0.86 16 6 Cl -0.08 -1.24 28.95 -51.86 -1.50 -2.74 16 7 C -0.06 -1.04 7.65 -39.35 -0.30 -1.34 16 8 C 0.17 2.91 5.92 -83.72 -0.50 2.42 16 9 N -0.66 -11.58 4.35 -11.41 -0.05 -11.63 16 10 C 0.46 10.12 7.53 -86.92 -0.65 9.46 16 11 S -0.69 -18.14 24.53 -107.50 -2.64 -20.78 16 12 N -0.38 -8.29 2.62 -124.14 -0.33 -8.61 16 13 C 0.04 0.62 8.91 59.85 0.53 1.15 16 14 C -0.30 -7.61 9.07 -14.98 -0.14 -7.75 16 15 H 0.14 4.18 7.27 -52.49 -0.38 3.79 16 16 C 0.07 1.70 5.37 -17.46 -0.09 1.61 16 17 N -0.82 -21.34 13.96 55.49 0.77 -20.57 16 18 Si 0.89 18.17 24.74 -169.99 -4.21 13.96 16 19 H -0.27 -4.99 6.72 56.52 0.38 -4.61 16 20 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.26 -5.40 7.07 56.52 0.40 -5.00 16 22 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 24 H 0.06 0.76 7.35 -51.93 -0.38 0.38 16 25 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 26 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 27 H 0.16 3.50 6.05 -42.99 -0.26 3.24 16 28 H 0.39 5.57 6.08 -40.82 -0.25 5.32 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.40 2.86 -51.92 -0.15 1.25 16 31 H 0.06 0.85 6.37 -51.93 -0.33 0.52 16 32 H 0.29 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 290.58 15.07 4.38 4.38 Total: -1.00 -30.21 290.58 -9.03 -39.23 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -3.02 Total: 8.82 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -2.44 Total: -2.07 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.40 Total: -40.81 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -4.21 Total: 13.96 kcal Atomic # 16 Polarization: -18.14 SS G_CDS: -2.64 Total: -20.78 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -1.50 Total: -2.74 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.21 -9.03 -39.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245149676.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.152 kcal (2) G-P(sol) polarization free energy of solvation -30.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds