Wall clock time and date at job start Tue Mar 31 2020 05:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 N 1.30971 * 126.43913 * 89.71237 * 10 9 7 12 12 C 1.35232 * 105.58046 * 179.89859 * 11 10 9 13 13 C 1.48365 * 126.41477 * 180.13327 * 12 11 10 14 14 C 1.39374 * 120.11590 * 359.97438 * 13 12 11 15 15 C 1.38177 * 119.92482 * 179.74735 * 14 13 12 16 16 F 1.35095 * 119.92946 * 180.25002 * 15 14 13 17 17 C 1.38560 * 120.14896 * 0.52672 * 15 14 13 18 18 C 1.38397 * 120.22520 * 359.74738 * 17 15 14 19 19 F 1.35099 * 119.96662 * 180.02562 * 18 17 15 20 20 C 1.38525 * 120.07080 * 359.97438 * 18 17 15 21 21 F 1.35105 * 120.07133 * 180.02562 * 20 18 17 22 22 N 1.30779 * 107.16531 * 0.36835 * 12 11 10 23 23 O 1.21290 * 110.09405 * 359.76526 * 22 12 11 24 24 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 25 25 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 26 26 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 27 27 H 1.08004 * 120.03103 * 359.97438 * 14 13 12 28 28 H 1.08003 * 119.89145 * 179.76795 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 7 2.7438 -4.2349 1.0383 12 6 3.5595 -5.1974 0.5516 13 6 4.3738 -6.1477 1.3485 14 6 4.3425 -6.0985 2.7410 15 6 5.0984 -6.9889 3.4793 16 9 5.0642 -6.9446 4.8291 17 6 5.8959 -7.9233 2.8384 18 6 5.9361 -7.9739 1.4560 19 9 6.7151 -8.8874 0.8365 20 6 5.1776 -7.0895 0.7067 21 9 5.2164 -7.1392 -0.6429 22 7 3.5000 -5.1304 -0.7531 23 8 2.7423 -4.2454 -1.0908 24 1 -0.4849 0.8401 0.0041 25 1 0.6280 -2.5591 0.8866 26 1 0.6206 -2.5548 -0.8933 27 1 3.7251 -5.3677 3.2423 28 1 6.4880 -8.6148 3.4196 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247445941.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:59 Heat of formation + Delta-G solvation = -44.149494 kcal Electronic energy + Delta-G solvation = -20949.564830 eV Core-core repulsion = 16940.624572 eV Total energy + Delta-G solvation = -4008.940258 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.051 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.76037 -49.32545 -48.78903 -44.99652 -39.07371 -35.43227 -34.03775 -32.42552 -31.01421 -30.30101 -28.55496 -25.19050 -24.25592 -23.15395 -22.60056 -21.02117 -18.59670 -17.92609 -17.76429 -17.73137 -16.77493 -16.71278 -16.34861 -16.22273 -15.78055 -15.19104 -15.09706 -14.91866 -14.76837 -14.39168 -13.56258 -13.33583 -12.64644 -12.55995 -12.51204 -12.39944 -11.88504 -11.50917 -11.35347 -11.08833 -10.84485 -10.57519 -10.31333 -10.12377 -9.51747 -9.05004 -8.83415 -8.67917 -6.31972 -4.38558 0.12721 0.40910 1.77443 2.48774 3.04285 3.15250 3.22069 3.26354 3.29899 3.50724 3.55998 3.67662 3.94188 4.22505 4.26825 4.37941 4.62985 4.89282 5.06544 5.11112 5.40395 5.47734 5.68635 5.70137 6.23388 6.32987 6.40335 7.01076 7.05951 7.60513 7.82350 8.61141 8.63437 9.27016 10.78222 Molecular weight = 284.05amu Principal moments of inertia in cm(-1) A = 0.024192 B = 0.003992 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.107328 B = 7011.953107 C = 7617.699046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.068 3.932 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.062 0.938 9 C 0.100 3.900 10 C 0.248 3.752 11 N -0.493 5.493 12 C 0.179 3.821 13 C 0.023 3.977 14 C -0.094 4.094 15 C 0.122 3.878 16 F -0.121 7.121 17 C -0.154 4.154 18 C 0.096 3.904 19 F -0.117 7.117 20 C 0.086 3.914 21 F -0.104 7.104 22 N -0.375 5.375 23 O 0.078 5.922 24 H 0.269 0.731 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.169 0.831 28 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.725 -13.921 5.306 17.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.080 0.920 9 C 0.061 3.939 10 C 0.030 3.970 11 N -0.226 5.226 12 C -0.091 4.091 13 C 0.020 3.980 14 C -0.115 4.115 15 C 0.102 3.898 16 F -0.100 7.100 17 C -0.174 4.174 18 C 0.076 3.924 19 F -0.095 7.095 20 C 0.064 3.936 21 F -0.082 7.082 22 N -0.083 5.083 23 O 0.017 5.983 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.186 0.814 28 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 9.084 -14.422 5.164 17.809 hybrid contribution 0.532 0.833 -0.155 1.000 sum 9.616 -13.589 5.009 17.385 Atomic orbital electron populations 1.69908 1.06036 1.27872 1.48527 1.24919 0.95006 0.99467 0.94187 0.86400 0.79460 0.81771 0.79008 1.19862 1.20880 1.19900 1.20739 0.93241 0.88738 1.53968 0.92016 1.18298 0.89751 0.84265 1.01539 1.30207 0.94088 0.94354 0.78312 1.72048 1.12762 1.08609 1.29195 1.23258 0.99975 0.97760 0.88075 1.16875 0.95883 0.93446 0.91786 1.21204 0.99333 0.99300 0.91664 1.16953 0.98351 0.96775 0.77697 1.91576 1.95102 1.95639 1.27636 1.21015 1.02394 1.01604 0.92433 1.16920 0.94768 0.90741 0.89983 1.91576 1.71849 1.63564 1.82542 1.17563 0.99811 0.97777 0.78472 1.91632 1.94744 1.95292 1.26571 1.74962 1.11174 1.07813 1.14341 1.85297 1.42377 1.33988 1.36667 0.92099 0.91024 0.92025 0.81370 0.81991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.85 13.29 55.43 0.74 -23.12 15 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 15 3 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 15 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 7 C -0.53 -13.63 9.09 -34.44 -0.31 -13.94 15 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 15 9 C 0.10 2.32 5.60 -29.04 -0.16 2.16 15 10 C 0.25 5.30 7.69 -12.99 -0.10 5.20 15 11 N -0.49 -10.11 11.26 -9.89 -0.11 -10.22 15 12 C 0.18 3.38 7.79 -156.12 -1.22 2.16 15 13 C 0.02 0.35 5.88 -104.85 -0.62 -0.27 15 14 C -0.09 -1.19 9.68 -39.18 -0.38 -1.56 15 15 C 0.12 1.27 7.29 -39.49 -0.29 0.99 15 16 F -0.12 -1.26 17.26 2.25 0.04 -1.22 15 17 C -0.15 -1.42 9.99 -39.40 -0.39 -1.82 15 18 C 0.10 1.10 7.30 -39.42 -0.29 0.81 15 19 F -0.12 -1.35 17.18 2.25 0.04 -1.31 15 20 C 0.09 1.22 7.28 -39.02 -0.28 0.93 15 21 F -0.10 -1.68 15.73 2.25 0.04 -1.65 15 22 N -0.37 -7.53 10.86 30.97 0.34 -7.19 15 23 O 0.08 1.62 11.29 18.04 0.20 1.82 15 24 H 0.27 6.86 8.31 -40.82 -0.34 6.53 15 25 H 0.07 1.71 8.14 -51.93 -0.42 1.28 15 26 H 0.06 1.42 8.14 -51.93 -0.42 1.00 15 27 H 0.17 2.12 7.88 -52.48 -0.41 1.71 15 28 H 0.16 1.02 8.06 -52.48 -0.42 0.60 15 LS Contribution 279.04 15.07 4.21 4.21 Total: -1.00 -27.07 279.04 -4.90 -31.96 By element: Atomic # 1 Polarization: -3.57 SS G_CDS: -1.22 Total: -4.80 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -4.14 Total: -3.67 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.96 Total: -40.53 kcal Atomic # 8 Polarization: 1.62 SS G_CDS: 0.20 Total: 1.82 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.11 Total: -4.17 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.07 -4.90 -31.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247445941.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.185 kcal (2) G-P(sol) polarization free energy of solvation -27.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds