Wall clock time and date at job start Tue Mar 31 2020 05:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31456 * 1 3 3 Si 1.86802 * 120.00099 * 2 1 4 4 H 1.48502 * 109.46874 * 269.99526 * 3 2 1 5 5 H 1.48495 * 109.47291 * 29.99460 * 3 2 1 6 6 H 1.48503 * 109.47188 * 150.00057 * 3 2 1 7 7 C 1.38902 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99735 * 359.97438 * 7 2 1 9 9 N 1.37008 * 120.00600 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00703 * 179.97438 * 9 7 2 11 11 S 1.71201 * 119.99360 * 359.97438 * 10 9 7 12 12 N 1.34774 * 120.00341 * 179.97438 * 10 9 7 13 13 C 1.34774 * 119.99759 * 179.97438 * 12 10 9 14 14 O 1.21538 * 120.00462 * 0.02562 * 13 12 10 15 15 C 1.47710 * 119.99996 * 179.97438 * 13 12 10 16 16 C 1.39657 * 120.13261 * 0.27139 * 15 13 12 17 17 C 1.37881 * 119.86241 * 180.27750 * 16 15 13 18 18 C 1.38523 * 120.13243 * 359.44880 * 17 16 15 19 19 Cl 1.73608 * 119.86065 * 180.30104 * 18 17 16 20 20 C 1.38516 * 120.27676 * 0.27838 * 18 17 16 21 21 C 1.37889 * 120.13376 * 0.02562 * 20 18 17 22 22 H 0.97007 * 120.00283 * 0.02562 * 1 2 3 23 23 H 0.97006 * 119.99665 * 359.97438 * 9 7 2 24 24 H 0.96996 * 120.00032 * 359.97438 * 12 10 9 25 25 H 1.07998 * 120.06753 * 0.02562 * 16 15 13 26 26 H 1.08002 * 119.93580 * 179.73272 * 17 16 15 27 27 H 1.07997 * 119.93850 * 180.02562 * 20 18 17 28 28 H 1.07994 * 120.07064 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2486 1.6177 0.0000 4 1 2.4962 2.0463 -1.4001 5 1 1.4461 2.6527 0.6999 6 1 3.5462 1.4402 0.7000 7 6 2.0091 -1.2029 0.0005 8 1 1.4691 -2.1383 0.0014 9 7 3.3792 -1.2030 0.0011 10 6 4.0532 -2.3702 0.0021 11 16 3.1971 -3.8528 0.0034 12 7 5.4009 -2.3702 0.0021 13 6 6.0747 -3.5374 0.0037 14 8 5.4671 -4.5899 0.0046 15 6 7.5518 -3.5374 0.0031 16 6 8.2530 -2.3296 0.0067 17 6 9.6317 -2.3361 0.0003 18 6 10.3214 -3.5375 0.0020 19 17 12.0575 -3.5374 0.0018 20 6 9.6318 -4.7387 0.0042 21 6 8.2529 -4.7453 0.0042 22 1 -0.4851 0.8401 -0.0004 23 1 3.8642 -0.3629 0.0007 24 1 5.8859 -1.5301 0.0010 25 1 7.7163 -1.3924 0.0103 26 1 10.1751 -1.4028 -0.0013 27 1 10.1750 -5.6721 0.0058 28 1 7.7162 -5.6824 0.0063 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248207889.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:12 Heat of formation + Delta-G solvation = 20.367953 kcal Electronic energy + Delta-G solvation = -16715.622248 eV Core-core repulsion = 13691.656439 eV Total energy + Delta-G solvation = -3023.965810 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 284.013 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.43432 -38.81959 -37.20375 -36.63344 -34.38436 -32.55493 -31.33624 -31.10602 -26.40605 -24.14767 -23.12406 -22.34529 -21.05103 -19.19795 -18.62342 -17.05355 -16.58219 -15.64296 -15.48689 -15.04925 -14.93057 -14.55818 -13.95688 -13.72802 -13.67195 -13.54596 -12.85076 -12.72623 -12.38793 -11.84057 -11.73330 -11.43514 -11.16086 -11.12482 -10.63227 -10.07514 -9.99995 -9.75550 -9.38979 -9.05518 -8.98137 -7.05178 -6.82393 -5.23601 -4.37726 0.49095 0.99232 1.77322 2.05292 2.61033 2.71793 2.75132 2.99422 3.00812 3.51981 3.71289 3.81052 4.38108 4.47901 4.54585 4.63658 4.74197 4.95453 5.07929 5.27617 5.62370 5.81979 5.88703 6.06373 6.29176 6.42328 6.99977 7.09382 7.65940 8.07568 8.41785 8.61369 8.74996 10.02535 Molecular weight = 284.01amu Principal moments of inertia in cm(-1) A = 0.027828 B = 0.003853 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.938299 B = 7266.235603 C = 8262.331239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.058 3.942 3 Si 0.879 3.121 4 H -0.259 1.259 5 H -0.262 1.262 6 H -0.266 1.266 7 C -0.277 4.277 8 H 0.165 0.835 9 N -0.477 5.477 10 C 0.390 3.610 11 S -0.649 6.649 12 N -0.646 5.646 13 C 0.529 3.471 14 O -0.413 6.413 15 C -0.115 4.115 16 C -0.083 4.083 17 C -0.116 4.116 18 C -0.020 4.020 19 Cl -0.070 7.070 20 C -0.115 4.115 21 C -0.048 4.048 22 H 0.290 0.710 23 H 0.370 0.630 24 H 0.388 0.612 25 H 0.133 0.867 26 H 0.138 0.862 27 H 0.140 0.860 28 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.659 2.773 -0.027 20.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.157 4.157 3 Si 0.703 3.297 4 H -0.184 1.184 5 H -0.186 1.186 6 H -0.191 1.191 7 C -0.414 4.414 8 H 0.182 0.818 9 N -0.083 5.083 10 C 0.036 3.964 11 S -0.516 6.516 12 N -0.294 5.294 13 C 0.310 3.690 14 O -0.279 6.279 15 C -0.120 4.120 16 C -0.102 4.102 17 C -0.135 4.135 18 C -0.047 4.047 19 Cl -0.041 7.041 20 C -0.134 4.134 21 C -0.067 4.067 22 H 0.101 0.899 23 H 0.205 0.795 24 H 0.224 0.776 25 H 0.150 0.850 26 H 0.156 0.844 27 H 0.158 0.842 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 19.441 1.148 -0.026 19.475 hybrid contribution 1.520 2.860 0.025 3.239 sum 20.960 4.008 -0.001 21.340 Atomic orbital electron populations 1.69619 1.05998 1.29551 1.38996 1.25357 0.95823 0.98823 0.95686 0.86668 0.80117 0.83020 0.79922 1.18395 1.18640 1.19109 1.20482 0.77628 0.99199 1.44130 0.81812 1.41506 1.08469 1.04231 1.54117 1.20953 0.82500 0.92213 1.00700 1.92518 1.67741 1.16332 1.74969 1.42376 1.05295 1.09993 1.71691 1.18062 0.86257 0.84291 0.80410 1.91316 1.66129 1.30609 1.39862 1.20487 0.93967 0.94237 1.03295 1.21295 0.93606 0.97644 0.97683 1.20955 0.93948 0.97098 1.01512 1.21158 0.84584 0.95310 1.03638 1.98379 1.10000 1.98969 1.96778 1.21061 0.93999 0.97112 1.01234 1.21289 0.92776 0.98511 0.94155 0.89856 0.79461 0.77590 0.84971 0.84446 0.84207 0.83275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.25 13.96 55.49 0.77 -19.48 15 2 C 0.06 1.35 5.50 -17.47 -0.10 1.26 15 3 Si 0.88 15.95 27.74 -169.99 -4.71 11.23 15 4 H -0.26 -4.62 7.11 56.52 0.40 -4.22 15 5 H -0.26 -4.76 7.11 56.52 0.40 -4.36 15 6 H -0.27 -4.33 6.52 56.52 0.37 -3.97 15 7 C -0.28 -6.96 9.99 -14.99 -0.15 -7.11 15 8 H 0.16 4.82 6.45 -52.48 -0.34 4.48 15 9 N -0.48 -10.28 5.09 -12.54 -0.06 -10.35 15 10 C 0.39 8.84 7.89 -86.92 -0.69 8.16 15 11 S -0.65 -18.23 25.00 -107.50 -2.69 -20.92 15 12 N -0.65 -11.27 5.19 -13.82 -0.07 -11.34 15 13 C 0.53 9.48 7.70 -12.39 -0.10 9.39 15 14 O -0.41 -9.38 13.09 5.33 0.07 -9.31 15 15 C -0.12 -1.51 5.87 -104.97 -0.62 -2.13 15 16 C -0.08 -0.84 9.54 -39.18 -0.37 -1.21 15 17 C -0.12 -1.05 9.81 -39.61 -0.39 -1.44 15 18 C -0.02 -0.19 6.33 -39.37 -0.25 -0.44 15 19 Cl -0.07 -0.61 28.95 -51.86 -1.50 -2.11 15 20 C -0.12 -1.13 9.81 -39.61 -0.39 -1.52 15 21 C -0.05 -0.57 9.59 -39.18 -0.38 -0.95 15 22 H 0.29 6.50 8.31 -40.82 -0.34 6.16 15 23 H 0.37 6.58 5.77 -40.82 -0.24 6.34 15 24 H 0.39 4.87 6.74 -40.82 -0.28 4.60 15 25 H 0.13 1.01 6.40 -52.49 -0.34 0.67 15 26 H 0.14 0.93 8.06 -52.49 -0.42 0.51 15 27 H 0.14 1.08 8.06 -52.49 -0.42 0.66 15 28 H 0.15 1.81 7.65 -52.49 -0.40 1.41 15 LS Contribution 279.22 15.07 4.21 4.21 Total: -1.00 -32.76 279.22 -9.01 -41.77 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -1.60 Total: 12.29 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -3.42 Total: 4.01 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.64 Total: -41.17 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.07 Total: -9.31 kcal Atomic # 14 Polarization: 15.95 SS G_CDS: -4.71 Total: 11.23 kcal Atomic # 16 Polarization: -18.23 SS G_CDS: -2.69 Total: -20.92 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.76 -9.01 -41.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248207889.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.134 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds