Wall clock time and date at job start Tue Mar 31 2020 05:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31884 * 119.60764 * 2 1 4 4 C 1.31844 * 121.73969 * 179.97438 * 3 2 1 5 5 C 1.38320 * 120.74583 * 0.02562 * 4 3 2 6 6 Br 1.89104 * 120.42815 * 180.02562 * 5 4 3 7 7 C 1.38706 * 119.14268 * 359.72147 * 5 4 3 8 8 C 1.38188 * 119.60893 * 179.97438 * 2 1 3 9 9 C 1.50700 * 120.41143 * 359.97438 * 8 2 1 10 10 N 1.46502 * 109.47345 * 279.60253 * 9 8 2 11 11 C 1.46499 * 119.99896 * 275.54018 * 10 9 8 12 12 C 1.36930 * 119.99976 * 95.53604 * 10 9 8 13 13 H 1.08003 * 120.00035 * 354.84103 * 12 10 9 14 14 C 1.38813 * 120.00178 * 175.12129 * 12 10 9 15 15 N 1.31619 * 119.99767 * 6.98108 * 14 12 10 16 16 Si 1.86794 * 120.00362 * 186.97784 * 14 12 10 17 17 H 1.48505 * 109.46895 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47538 * 119.99854 * 16 14 12 19 19 H 1.48504 * 109.47054 * 240.00085 * 16 14 12 20 20 H 1.08996 * 109.47005 * 269.73500 * 1 2 3 21 21 H 1.08996 * 109.47244 * 29.73972 * 1 2 3 22 22 H 1.09001 * 109.46592 * 149.73597 * 1 2 3 23 23 H 1.07999 * 119.62795 * 180.02562 * 4 3 2 24 24 H 1.08006 * 120.79432 * 180.29608 * 7 5 4 25 25 H 1.08999 * 109.47114 * 159.60460 * 9 8 2 26 26 H 1.09001 * 109.47219 * 39.60522 * 9 8 2 27 27 H 1.09006 * 109.47092 * 240.86213 * 11 10 9 28 28 H 1.09001 * 109.47222 * 0.85428 * 11 10 9 29 29 H 1.08993 * 109.47433 * 120.85938 * 11 10 9 30 30 H 0.96999 * 120.00263 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1586 1.1466 0.0000 4 6 3.4761 1.1957 0.0005 5 6 4.2270 0.0340 0.0005 6 35 6.1163 0.1149 0.0020 7 6 3.5762 -1.1909 0.0059 8 6 2.1897 -1.2014 0.0005 9 6 1.4367 -2.5068 0.0017 10 7 0.9936 -2.8138 1.3639 11 6 1.9025 -3.4859 2.2958 12 6 -0.2700 -2.4725 1.7661 13 1 -0.9108 -1.9037 1.1087 14 6 -0.7253 -2.8525 3.0212 15 7 0.0991 -3.4191 3.8766 16 14 -2.5080 -2.5598 3.4962 17 1 -3.2214 -1.9123 2.3661 18 1 -3.1557 -3.8581 3.8124 19 1 -2.5639 -1.6755 4.6880 20 1 -0.3633 -0.0048 1.0276 21 1 -0.3633 0.8923 -0.5098 22 1 -0.3632 -0.8876 -0.5179 23 1 3.9747 2.1537 0.0009 24 1 4.1361 -2.1145 0.0108 25 1 2.0894 -3.3031 -0.3562 26 1 0.5690 -2.4263 -0.6531 27 1 1.4699 -4.4385 2.6019 28 1 2.8600 -3.6625 1.8058 29 1 2.0538 -2.8570 3.1731 30 1 -0.2190 -3.6850 4.7535 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248781004.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:13 Heat of formation + Delta-G solvation = 65.127499 kcal Electronic energy + Delta-G solvation = -15055.236900 eV Core-core repulsion = 12511.864547 eV Total energy + Delta-G solvation = -2543.372353 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.04648 -35.95513 -33.28879 -32.74911 -30.58677 -30.30001 -27.10474 -26.40604 -25.49724 -22.60189 -21.86923 -20.27718 -17.04603 -16.38828 -16.06540 -15.14485 -14.60699 -14.12966 -13.44386 -13.13562 -13.06901 -12.85857 -12.30564 -12.03423 -11.86766 -11.40049 -11.19981 -10.89188 -10.81814 -10.75381 -10.34451 -10.28329 -9.96703 -9.76387 -9.22728 -9.19520 -8.61174 -8.31166 -7.04315 -5.72376 -3.14797 1.23515 1.54926 1.71327 3.34208 3.40008 3.42669 3.97727 4.44832 4.63530 5.05405 5.08868 5.26684 5.41102 5.47292 5.64441 5.92058 5.97488 6.08939 6.12951 6.31468 6.47901 6.58161 6.68299 6.68975 6.99424 7.58967 7.61794 7.86743 8.23369 8.28010 9.16756 9.78501 10.21152 11.26816 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.031516 B = 0.005186 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.228875 B = 5397.509239 C = 5858.468992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.160 3.840 3 N -0.483 5.483 4 C 0.116 3.884 5 C -0.153 4.153 6 Br -0.057 7.057 7 C -0.046 4.046 8 C -0.130 4.130 9 C 0.187 3.813 10 N -0.598 5.598 11 C 0.168 3.832 12 C -0.254 4.254 13 H 0.085 0.915 14 C -0.004 4.004 15 N -0.914 5.914 16 Si 0.906 3.094 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.291 1.291 20 H 0.097 0.903 21 H 0.063 0.937 22 H 0.081 0.919 23 H 0.154 0.846 24 H 0.136 0.864 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.047 0.953 28 H -0.010 1.010 29 H 0.042 0.958 30 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.597 5.795 -9.191 14.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.023 3.977 3 N -0.193 5.193 4 C -0.044 4.044 5 C -0.235 4.235 6 Br 0.027 6.973 7 C -0.074 4.074 8 C -0.137 4.137 9 C 0.059 3.941 10 N -0.319 5.319 11 C 0.025 3.975 12 C -0.382 4.382 13 H 0.103 0.897 14 C -0.200 4.200 15 N -0.561 5.561 16 Si 0.736 3.264 17 H -0.202 1.202 18 H -0.216 1.216 19 H -0.218 1.218 20 H 0.115 0.885 21 H 0.082 0.918 22 H 0.100 0.900 23 H 0.172 0.828 24 H 0.154 0.846 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.009 0.991 29 H 0.060 0.940 30 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 9.735 6.489 -8.978 14.747 hybrid contribution -0.587 -0.530 0.610 0.999 sum 9.147 5.959 -8.367 13.755 Atomic orbital electron populations 1.20987 0.88344 1.02311 1.04540 1.21289 0.97408 0.87445 0.91605 1.67616 1.08522 1.29646 1.13496 1.22546 0.89427 0.96592 0.95848 1.22799 0.90554 0.97708 1.12408 1.96630 1.03648 1.99107 1.97932 1.21408 0.94273 0.96435 0.95265 1.22223 0.93600 1.00010 0.97822 1.19798 0.96250 0.89329 0.88754 1.44181 1.12627 1.67226 1.07881 1.21086 0.87648 0.97709 0.91107 1.19584 0.89119 1.29866 0.99647 0.89687 1.24907 0.98121 1.00333 0.96657 1.70239 1.32641 1.46339 1.06898 0.86141 0.84494 0.77443 0.78274 1.20227 1.21583 1.21790 0.88513 0.91820 0.90050 0.82848 0.84635 0.93268 0.91373 0.93494 0.99122 0.93969 0.93885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 8.22 36.00 0.30 -1.50 16 2 C 0.16 2.96 6.78 -82.59 -0.56 2.40 16 3 N -0.48 -8.71 10.27 -9.45 -0.10 -8.81 16 4 C 0.12 1.85 10.95 -17.52 -0.19 1.65 16 5 C -0.15 -2.39 6.25 -39.38 -0.25 -2.64 16 6 Br -0.06 -0.75 33.74 -68.01 -2.29 -3.04 16 7 C -0.05 -0.76 9.59 -39.26 -0.38 -1.14 16 8 C -0.13 -2.36 5.47 -104.49 -0.57 -2.94 16 9 C 0.19 3.56 5.28 -5.19 -0.03 3.53 16 10 N -0.60 -14.11 2.92 -182.50 -0.53 -14.65 16 11 C 0.17 4.10 8.99 59.85 0.54 4.63 16 12 C -0.25 -6.42 8.56 -15.06 -0.13 -6.55 16 13 H 0.09 2.01 5.21 -52.48 -0.27 1.73 16 14 C 0.00 -0.10 5.45 -17.43 -0.09 -0.19 16 15 N -0.91 -25.84 9.45 55.49 0.52 -25.32 16 16 Si 0.91 21.14 29.56 -169.99 -5.02 16.11 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H 0.10 1.86 6.89 -51.93 -0.36 1.51 16 21 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.08 1.33 5.33 -51.93 -0.28 1.05 16 23 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 24 H 0.14 2.07 8.06 -52.48 -0.42 1.64 16 25 H 0.05 0.85 7.94 -51.93 -0.41 0.44 16 26 H 0.07 1.22 6.24 -51.93 -0.32 0.89 16 27 H 0.05 1.23 7.00 -51.93 -0.36 0.87 16 28 H -0.01 -0.21 7.87 -51.93 -0.41 -0.62 16 29 H 0.04 1.14 7.08 -51.93 -0.37 0.77 16 30 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 268.93 15.07 4.05 4.05 Total: -1.00 -28.20 268.93 -7.92 -36.12 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -3.19 Total: -1.73 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -1.36 Total: -2.74 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.10 Total: -48.77 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 35 Polarization: -0.75 SS G_CDS: -2.29 Total: -3.04 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.20 -7.92 -36.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248781004.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.246 kcal (2) G-P(sol) polarization free energy of solvation -28.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds