Wall clock time and date at job start Tue Mar 31 2020 05:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30601 * 1 3 3 Si 1.86804 * 119.99743 * 2 1 4 4 H 1.48492 * 109.47047 * 239.99796 * 3 2 1 5 5 H 1.48492 * 109.47165 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46765 * 120.00003 * 3 2 1 7 7 C 1.40402 * 120.00356 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.39471 * 119.99645 * 0.02562 * 7 2 1 10 10 N 1.33166 * 126.36684 * 359.97438 * 9 7 2 11 11 N 1.28677 * 109.16131 * 179.75137 * 10 9 7 12 12 C 1.32312 * 109.44677 * 0.40881 * 11 10 9 13 13 C 1.47243 * 126.16730 * 179.85619 * 12 11 10 14 14 C 1.39939 * 120.17343 * 359.69070 * 13 12 11 15 15 C 1.37846 * 119.82010 * 179.97438 * 14 13 12 16 16 C 1.38455 * 120.17688 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.82239 * 179.74759 * 16 15 14 18 18 F 1.39897 * 109.46925 * 89.99989 * 17 16 15 19 19 F 1.39900 * 109.46955 * 209.99836 * 17 16 15 20 20 F 1.39897 * 109.46875 * 330.00067 * 17 16 15 21 21 C 1.38448 * 120.35669 * 0.02562 * 16 15 14 22 22 C 1.37844 * 120.17899 * 0.02562 * 21 16 15 23 23 O 1.34884 * 107.66693 * 359.59809 * 12 11 10 24 24 H 0.96994 * 120.00353 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.09169 * 359.97438 * 14 13 12 26 26 H 1.07997 * 119.91422 * 180.02562 * 15 14 13 27 27 H 1.07996 * 119.91455 * 179.97438 * 21 16 15 28 28 H 1.08002 * 120.09612 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6178 0.0000 4 1 3.0937 1.6965 -1.2124 5 1 1.2750 2.7464 -0.0006 6 1 3.0937 1.6964 1.2125 7 6 2.0081 -1.2159 0.0005 8 1 3.0881 -1.2159 0.0001 9 6 1.3107 -2.4237 0.0005 10 7 -0.0127 -2.5714 0.0005 11 7 -0.2977 -3.8262 -0.0047 12 6 0.8214 -4.5321 0.0006 13 6 0.9222 -6.0011 0.0002 14 6 -0.2366 -6.7856 0.0003 15 6 -0.1338 -8.1602 -0.0006 16 6 1.1117 -8.7650 -0.0021 17 6 1.2149 -10.2684 0.0027 18 9 1.2430 -10.7381 -1.3148 19 9 2.3883 -10.6533 0.6601 20 9 0.1091 -10.8096 0.6672 21 6 2.2630 -7.9959 -0.0022 22 6 2.1772 -6.6201 -0.0003 23 8 1.8533 -3.6635 0.0006 24 1 -0.4850 0.8400 0.0004 25 1 -1.2089 -6.3154 0.0011 26 1 -1.0271 -8.7671 -0.0009 27 1 3.2308 -8.4751 -0.0030 28 1 3.0762 -6.0215 -0.0008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252847694.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:02 Heat of formation + Delta-G solvation = -108.520131 kcal Electronic energy + Delta-G solvation = -20832.945832 eV Core-core repulsion = 16821.214253 eV Total energy + Delta-G solvation = -4011.731578 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.051 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.11958 -47.64330 -47.58037 -41.85049 -38.93721 -34.43503 -34.10137 -32.50573 -30.95520 -29.59636 -27.03486 -25.18959 -22.92118 -22.48197 -21.45432 -20.58826 -18.46200 -18.36363 -18.30198 -17.98752 -16.46968 -15.75773 -15.46069 -14.93544 -14.68995 -14.41496 -14.30984 -14.15853 -14.05605 -13.83362 -13.75635 -13.49450 -13.24596 -12.93081 -12.73012 -12.01615 -11.58795 -11.53287 -11.32527 -11.04399 -10.75302 -10.69665 -10.13545 -10.06407 -9.34098 -9.07461 -8.94191 -7.84718 -7.17043 -5.15381 0.83106 1.47427 2.60268 2.73503 2.82401 2.87581 2.96587 3.51774 3.68029 3.79780 3.99569 4.09770 4.17578 4.50975 4.82952 4.91855 4.96610 5.31056 5.48549 5.61304 5.83944 6.04620 6.25904 6.33271 6.40494 6.60260 6.68378 6.90338 7.12028 7.18421 7.72348 7.92578 8.17508 9.73797 10.14960 Molecular weight = 284.05amu Principal moments of inertia in cm(-1) A = 0.052576 B = 0.003233 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.433673 B = 8657.780212 C = 9015.724233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.707 5.707 2 C 0.066 3.934 3 Si 0.940 3.060 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.398 4.398 8 H 0.103 0.897 9 C 0.290 3.710 10 N -0.345 5.345 11 N -0.229 5.229 12 C 0.009 3.991 13 C 0.090 3.910 14 C -0.111 4.111 15 C -0.061 4.061 16 C -0.215 4.215 17 C 0.512 3.488 18 F -0.181 7.181 19 F -0.181 7.181 20 F -0.181 7.181 21 C -0.061 4.061 22 C -0.126 4.126 23 O -0.266 6.266 24 H 0.292 0.708 25 H 0.144 0.856 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.288 -11.008 0.005 11.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.329 5.329 2 C -0.163 4.163 3 Si 0.762 3.238 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.183 1.183 7 C -0.432 4.432 8 H 0.121 0.879 9 C 0.111 3.889 10 N -0.204 5.204 11 N -0.085 5.085 12 C -0.192 4.192 13 C 0.087 3.913 14 C -0.131 4.131 15 C -0.079 4.079 16 C -0.217 4.217 17 C 0.458 3.542 18 F -0.162 7.162 19 F -0.163 7.163 20 F -0.162 7.162 21 C -0.079 4.079 22 C -0.146 4.146 23 O -0.156 6.156 24 H 0.104 0.896 25 H 0.162 0.838 26 H 0.152 0.848 27 H 0.150 0.850 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.849 -10.545 0.001 10.706 hybrid contribution 1.646 0.194 0.000 1.657 sum 3.495 -10.351 0.002 10.925 Atomic orbital electron populations 1.69884 1.07550 1.30507 1.24929 1.26111 0.95285 1.01618 0.93286 0.85827 0.79659 0.77841 0.80481 1.18263 1.19464 1.18255 1.18390 0.95336 0.85707 1.43741 0.87915 1.23708 0.88981 0.83295 0.92874 1.75879 1.10111 1.04298 1.30066 1.74497 1.24838 1.00511 1.08672 1.23891 0.82720 0.91487 1.21152 1.17500 0.93657 0.86025 0.94119 1.21104 0.98711 0.92102 1.01195 1.20710 0.95887 0.94781 0.96542 1.19864 0.96549 0.89979 1.15333 1.18334 0.73311 0.89064 0.73504 1.93207 1.96132 1.90406 1.36484 1.93166 1.49023 1.92730 1.81333 1.93168 1.53976 1.88056 1.80997 1.20676 0.97164 0.93516 0.96590 1.21190 0.97418 0.93761 1.02267 1.84799 1.36814 1.16834 1.77176 0.89625 0.83844 0.84763 0.84957 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.63 11.91 55.57 0.66 -16.97 15 2 C 0.07 1.53 5.50 -17.26 -0.09 1.44 15 3 Si 0.94 16.59 29.56 -169.99 -5.03 11.57 15 4 H -0.26 -4.46 7.11 56.52 0.40 -4.06 15 5 H -0.27 -4.60 7.11 56.52 0.40 -4.20 15 6 H -0.26 -4.46 7.11 56.52 0.40 -4.05 15 7 C -0.40 -9.98 9.44 -38.31 -0.36 -10.34 15 8 H 0.10 2.32 7.85 -52.48 -0.41 1.91 15 9 C 0.29 7.94 7.83 -16.51 -0.13 7.81 15 10 N -0.34 -9.87 10.50 30.62 0.32 -9.55 15 11 N -0.23 -6.03 11.94 32.12 0.38 -5.64 15 12 C 0.01 0.22 7.98 -13.69 -0.11 0.11 15 13 C 0.09 1.71 5.88 -104.96 -0.62 1.09 15 14 C -0.11 -1.83 9.71 -39.09 -0.38 -2.21 15 15 C -0.06 -0.85 9.38 -39.64 -0.37 -1.22 15 16 C -0.21 -2.95 5.47 -104.46 -0.57 -3.52 15 17 C 0.51 6.47 3.36 36.01 0.12 6.59 15 18 F -0.18 -2.33 17.30 2.25 0.04 -2.29 15 19 F -0.18 -2.26 16.44 2.25 0.04 -2.23 15 20 F -0.18 -2.26 16.45 2.25 0.04 -2.22 15 21 C -0.06 -0.85 9.37 -39.65 -0.37 -1.22 15 22 C -0.13 -2.05 9.73 -39.09 -0.38 -2.43 15 23 O -0.27 -6.83 10.68 1.18 0.01 -6.82 15 24 H 0.29 6.42 8.29 -40.82 -0.34 6.08 15 25 H 0.14 2.35 7.86 -52.49 -0.41 1.93 15 26 H 0.13 1.53 7.59 -52.49 -0.40 1.13 15 27 H 0.13 1.50 7.59 -52.49 -0.40 1.10 15 28 H 0.14 2.13 7.92 -52.49 -0.42 1.72 15 LS Contribution 276.86 15.07 4.17 4.17 Total: -1.00 -28.53 276.86 -3.80 -32.33 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -1.17 Total: 1.55 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -3.27 Total: -3.90 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 1.37 Total: -32.16 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: 0.01 Total: -6.82 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 0.11 Total: -6.74 kcal Atomic # 14 Polarization: 16.59 SS G_CDS: -5.03 Total: 11.57 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.53 -3.80 -32.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252847694.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.190 kcal (2) G-P(sol) polarization free energy of solvation -28.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds