Wall clock time and date at job start Tue Mar 31 2020 05:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47084 * 2 1 4 4 C 1.36940 * 120.00295 * 269.49204 * 3 2 1 5 5 H 1.08001 * 119.99483 * 325.92941 * 4 3 2 6 6 C 1.38809 * 119.99924 * 145.93126 * 4 3 2 7 7 N 1.31623 * 120.00136 * 336.74031 * 6 4 3 8 8 Si 1.86801 * 120.00068 * 156.74584 * 6 4 3 9 9 H 1.48504 * 109.46961 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47173 * 119.99659 * 8 6 4 11 11 H 1.48492 * 109.47166 * 239.99820 * 8 6 4 12 12 C 1.46509 * 119.99792 * 89.49218 * 3 2 1 13 13 C 1.50697 * 109.46920 * 90.00052 * 12 3 2 14 14 C 1.38700 * 120.40663 * 89.99882 * 13 12 3 15 15 C 1.38587 * 118.42912 * 180.02562 * 14 13 12 16 16 C 1.38350 * 119.15218 * 0.02562 * 15 14 13 17 17 Br 1.89108 * 119.62849 * 179.97438 * 16 15 14 18 18 N 1.31928 * 120.74264 * 359.97438 * 16 15 14 19 19 C 1.31895 * 121.70916 * 0.02562 * 18 16 15 20 20 H 1.08998 * 109.47213 * 59.99522 * 1 2 3 21 21 H 1.08999 * 109.47274 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47210 * 299.99562 * 1 2 3 23 23 H 1.09000 * 109.46846 * 240.00036 * 2 1 3 24 24 H 1.08998 * 109.47213 * 120.00478 * 2 1 3 25 25 H 0.96997 * 119.99867 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.46961 * 330.00074 * 12 3 2 27 27 H 1.08995 * 109.46683 * 209.99969 * 12 3 2 28 28 H 1.07996 * 120.78200 * 0.02562 * 14 13 12 29 29 H 1.08003 * 120.41936 * 179.72768 * 15 14 13 30 30 H 1.08004 * 119.61047 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2565 2.0233 -1.1859 5 1 2.6240 1.4681 -2.0362 6 6 2.0256 3.3877 -1.2949 7 7 1.1820 3.9799 -0.4763 8 14 2.9120 4.3834 -2.6035 9 1 3.7999 3.4890 -3.3891 10 1 1.9153 5.0109 -3.5078 11 1 3.7260 5.4416 -1.9535 12 6 2.2519 2.0756 1.2688 13 6 3.6715 1.8400 1.7163 14 6 4.6831 2.7053 1.3268 15 6 5.9739 2.4495 1.7616 16 6 6.2088 1.3471 2.5637 17 35 7.9651 0.9850 3.1641 18 7 5.2214 0.5456 2.9145 19 6 3.9814 0.7590 2.5189 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 1.0204 4.9333 -0.5528 26 1 1.5647 1.6936 2.0238 27 1 2.0860 3.1443 1.1339 28 1 4.4698 3.5581 0.6994 29 1 6.7868 3.0999 1.4739 30 1 3.1989 0.0811 2.8266 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308608553.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:08 Heat of formation + Delta-G solvation = 50.517579 kcal Electronic energy + Delta-G solvation = -14934.918026 eV Core-core repulsion = 12390.912140 eV Total energy + Delta-G solvation = -2544.005886 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.73314 -36.17229 -32.56374 -32.06188 -31.81668 -30.10410 -28.52728 -25.72393 -23.78342 -23.09746 -21.68137 -20.09893 -17.03371 -16.38662 -15.96207 -14.91777 -14.61731 -14.32801 -13.81453 -13.61275 -13.09927 -12.62610 -12.54636 -12.10668 -11.35467 -11.26923 -11.16471 -10.83614 -10.67944 -10.52283 -10.32379 -10.18839 -10.14464 -9.90124 -9.36225 -9.14903 -8.67941 -8.34179 -6.82367 -5.98014 -3.48677 1.36106 1.65836 1.68332 3.23209 3.34517 3.37502 4.08752 4.35972 4.85992 5.13241 5.33690 5.41804 5.47862 5.56720 5.85371 5.94019 6.01977 6.33028 6.37877 6.41177 6.50895 6.58904 6.87569 6.95088 7.04514 7.16519 7.44270 7.67282 8.12028 8.31524 8.98381 9.61888 10.17992 11.02633 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.023069 B = 0.005540 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.438865 B = 5052.936775 C = 5905.427016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 N -0.574 5.574 4 C -0.253 4.253 5 H 0.064 0.936 6 C 0.010 3.990 7 N -0.881 5.881 8 Si 0.890 3.110 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.285 1.285 12 C 0.171 3.829 13 C -0.102 4.102 14 C -0.056 4.056 15 C -0.139 4.139 16 C 0.097 3.903 17 Br -0.037 7.037 18 N -0.468 5.468 19 C 0.098 3.902 20 H 0.055 0.945 21 H 0.032 0.968 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.034 0.966 25 H 0.257 0.743 26 H 0.041 0.959 27 H 0.113 0.887 28 H 0.141 0.859 29 H 0.134 0.866 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.860 -3.561 6.606 11.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.015 3.985 3 N -0.293 5.293 4 C -0.383 4.383 5 H 0.082 0.918 6 C -0.191 4.191 7 N -0.523 5.523 8 Si 0.719 3.281 9 H -0.199 1.199 10 H -0.214 1.214 11 H -0.212 1.212 12 C 0.044 3.956 13 C -0.107 4.107 14 C -0.083 4.083 15 C -0.161 4.161 16 C -0.119 4.119 17 Br 0.046 6.954 18 N -0.178 5.178 19 C -0.062 4.062 20 H 0.074 0.926 21 H 0.051 0.949 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.130 0.870 28 H 0.158 0.842 29 H 0.152 0.848 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 9.596 -4.270 7.328 12.807 hybrid contribution -0.105 1.336 -1.373 1.919 sum 9.491 -2.934 5.955 11.583 Atomic orbital electron populations 1.22249 0.99248 0.98608 1.02033 1.20914 0.92207 0.86903 0.98478 1.43839 1.73461 1.10322 1.01707 1.19147 1.37323 0.91435 0.90370 0.91836 1.25074 0.97276 0.98536 0.98183 1.69982 1.32151 1.10533 1.39639 0.86416 0.79779 0.80264 0.81623 1.19949 1.21441 1.21167 1.20092 0.85779 1.03032 0.86729 1.22452 1.01701 0.93583 0.93008 1.21588 0.91066 0.99328 0.96318 1.21908 0.98545 0.97281 0.98415 1.22349 0.92221 0.95959 1.01389 1.96640 1.13173 1.96142 1.89433 1.67249 1.00193 1.28285 1.22038 1.22621 0.91890 0.96242 0.95452 0.92580 0.94862 0.93674 0.93795 0.94720 0.93307 0.94025 0.87000 0.84166 0.84805 0.82873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 10.24 37.16 0.38 -2.64 16 2 C 0.14 2.79 6.39 -4.04 -0.03 2.76 16 3 N -0.57 -13.09 2.43 -174.61 -0.43 -13.52 16 4 C -0.25 -6.39 9.48 -15.06 -0.14 -6.54 16 5 H 0.06 1.64 7.93 -52.49 -0.42 1.23 16 6 C 0.01 0.25 4.94 -17.43 -0.09 0.16 16 7 N -0.88 -23.21 11.34 55.49 0.63 -22.58 16 8 Si 0.89 20.08 29.61 -169.99 -5.03 15.05 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 C 0.17 3.62 5.45 -5.19 -0.03 3.59 16 13 C -0.10 -1.95 5.48 -104.48 -0.57 -2.52 16 14 C -0.06 -1.03 9.86 -39.28 -0.39 -1.42 16 15 C -0.14 -2.32 9.84 -39.41 -0.39 -2.71 16 16 C 0.10 1.67 7.16 -17.47 -0.13 1.55 16 17 Br -0.04 -0.53 33.87 -68.01 -2.30 -2.84 16 18 N -0.47 -8.54 10.32 -11.64 -0.12 -8.66 16 19 C 0.10 1.74 10.86 -17.55 -0.19 1.55 16 20 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 21 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.04 0.87 8.04 -51.93 -0.42 0.45 16 24 H 0.03 0.62 8.08 -51.93 -0.42 0.20 16 25 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 26 H 0.04 0.83 8.02 -51.93 -0.42 0.41 16 27 H 0.11 2.68 5.29 -51.93 -0.27 2.41 16 28 H 0.14 2.67 8.06 -52.49 -0.42 2.25 16 29 H 0.13 1.89 8.06 -52.48 -0.42 1.46 16 30 H 0.15 2.42 8.06 -52.48 -0.42 2.00 16 LS Contribution 282.85 15.07 4.26 4.26 Total: -1.00 -26.42 282.85 -8.17 -34.60 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -3.62 Total: -0.09 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -1.57 Total: -6.21 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.08 Total: -44.76 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.05 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -2.30 Total: -2.84 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -26.42 -8.17 -34.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308608553.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.113 kcal (2) G-P(sol) polarization free energy of solvation -26.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds