Wall clock time and date at job start Tue Mar 31 2020 05:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47084 * 2 1 4 4 C 1.36940 * 120.00295 * 269.49204 * 3 2 1 5 5 H 1.08001 * 119.99483 * 325.92941 * 4 3 2 6 6 C 1.38809 * 119.99924 * 145.93126 * 4 3 2 7 7 N 1.31623 * 120.00136 * 336.74031 * 6 4 3 8 8 Si 1.86801 * 120.00068 * 156.74584 * 6 4 3 9 9 H 1.48504 * 109.46961 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47173 * 119.99659 * 8 6 4 11 11 H 1.48492 * 109.47166 * 239.99820 * 8 6 4 12 12 C 1.46509 * 119.99792 * 89.49218 * 3 2 1 13 13 C 1.50697 * 109.46920 * 90.00052 * 12 3 2 14 14 C 1.38700 * 120.40663 * 89.99882 * 13 12 3 15 15 C 1.38587 * 118.42912 * 180.02562 * 14 13 12 16 16 C 1.38350 * 119.15218 * 0.02562 * 15 14 13 17 17 Br 1.89108 * 119.62849 * 179.97438 * 16 15 14 18 18 N 1.31928 * 120.74264 * 359.97438 * 16 15 14 19 19 C 1.31895 * 121.70916 * 0.02562 * 18 16 15 20 20 H 1.08998 * 109.47213 * 59.99522 * 1 2 3 21 21 H 1.08999 * 109.47274 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47210 * 299.99562 * 1 2 3 23 23 H 1.09000 * 109.46846 * 240.00036 * 2 1 3 24 24 H 1.08998 * 109.47213 * 120.00478 * 2 1 3 25 25 H 0.96997 * 119.99867 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.46961 * 330.00074 * 12 3 2 27 27 H 1.08995 * 109.46683 * 209.99969 * 12 3 2 28 28 H 1.07996 * 120.78200 * 0.02562 * 14 13 12 29 29 H 1.08003 * 120.41936 * 179.72768 * 15 14 13 30 30 H 1.08004 * 119.61047 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2565 2.0233 -1.1859 5 1 2.6240 1.4681 -2.0362 6 6 2.0256 3.3877 -1.2949 7 7 1.1820 3.9799 -0.4763 8 14 2.9120 4.3834 -2.6035 9 1 3.7999 3.4890 -3.3891 10 1 1.9153 5.0109 -3.5078 11 1 3.7260 5.4416 -1.9535 12 6 2.2519 2.0756 1.2688 13 6 3.6715 1.8400 1.7163 14 6 4.6831 2.7053 1.3268 15 6 5.9739 2.4495 1.7616 16 6 6.2088 1.3471 2.5637 17 35 7.9651 0.9850 3.1641 18 7 5.2214 0.5456 2.9145 19 6 3.9814 0.7590 2.5189 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 1.0204 4.9333 -0.5528 26 1 1.5647 1.6936 2.0238 27 1 2.0860 3.1443 1.1339 28 1 4.4698 3.5581 0.6994 29 1 6.7868 3.0999 1.4739 30 1 3.1989 0.0811 2.8266 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308608553.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:08 Heat of formation + Delta-G solvation = 37.265864 kcal Electronic energy + Delta-G solvation = -14935.492664 eV Core-core repulsion = 12390.912140 eV Total energy + Delta-G solvation = -2544.580524 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.14597 -37.85244 -34.03517 -33.81477 -33.23892 -31.51179 -30.14538 -27.40179 -25.44277 -24.53725 -23.16591 -21.75658 -18.81663 -17.78848 -17.41946 -16.69540 -16.09193 -15.93644 -15.52894 -15.06570 -14.61044 -14.15697 -14.05877 -13.65919 -13.18091 -12.91758 -12.64164 -12.54251 -12.25932 -12.16789 -11.90457 -11.79048 -11.51944 -11.45233 -10.78734 -10.63035 -10.50487 -9.73351 -8.65141 -7.86917 -5.41489 -0.02998 0.26383 0.35239 1.42714 1.49633 1.57357 2.48954 2.69411 3.21888 3.52325 3.79219 3.97377 4.04567 4.13407 4.35611 4.45032 4.59735 4.80713 4.85419 4.88474 5.03731 5.10078 5.30876 5.42661 5.57549 5.61915 5.67067 5.77796 6.44107 6.72546 7.12839 7.81839 8.33082 9.10680 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.023069 B = 0.005540 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.438865 B = 5052.936775 C = 5905.427016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.136 3.864 3 N -0.589 5.589 4 C -0.260 4.260 5 H 0.052 0.948 6 C -0.026 4.026 7 N -0.908 5.908 8 Si 0.941 3.059 9 H -0.274 1.274 10 H -0.294 1.294 11 H -0.281 1.281 12 C 0.178 3.822 13 C -0.113 4.113 14 C -0.066 4.066 15 C -0.134 4.134 16 C 0.090 3.910 17 Br -0.006 7.006 18 N -0.478 5.478 19 C 0.101 3.899 20 H 0.026 0.974 21 H 0.066 0.934 22 H 0.038 0.962 23 H 0.040 0.960 24 H 0.058 0.942 25 H 0.254 0.746 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.129 0.871 29 H 0.161 0.839 30 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.174 -4.382 7.255 13.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.011 3.989 3 N -0.309 5.309 4 C -0.390 4.390 5 H 0.069 0.931 6 C -0.224 4.224 7 N -0.551 5.551 8 Si 0.769 3.231 9 H -0.198 1.198 10 H -0.221 1.221 11 H -0.207 1.207 12 C 0.051 3.949 13 C -0.118 4.118 14 C -0.093 4.093 15 C -0.156 4.156 16 C -0.126 4.126 17 Br 0.078 6.922 18 N -0.188 5.188 19 C -0.058 4.058 20 H 0.046 0.954 21 H 0.085 0.915 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.102 0.898 28 H 0.147 0.853 29 H 0.178 0.822 30 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 10.930 -5.109 7.992 14.472 hybrid contribution -0.418 1.529 -1.499 2.181 sum 10.512 -3.580 6.494 12.864 Atomic orbital electron populations 1.22115 0.98451 1.00211 1.00230 1.21050 0.92808 0.85669 0.99400 1.44010 1.74244 1.11181 1.01442 1.19207 1.36926 0.91771 0.91130 0.93054 1.25547 0.97870 0.99176 0.99797 1.70078 1.33494 1.10381 1.41173 0.85638 0.78669 0.79077 0.79706 1.19842 1.22088 1.20746 1.19875 0.87370 1.01231 0.86425 1.22227 1.00520 0.94669 0.94369 1.21604 0.92057 0.99140 0.96515 1.22122 0.98395 0.97453 0.97629 1.22805 0.93388 0.95644 1.00779 1.96669 1.10485 1.96018 1.89069 1.67367 1.00425 1.28703 1.22339 1.22832 0.92461 0.95836 0.94646 0.95443 0.91513 0.94282 0.94150 0.92390 0.93659 0.93123 0.89795 0.85286 0.82178 0.80931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.48 10.24 71.98 0.74 -4.74 16 2 C 0.14 5.23 6.39 86.38 0.55 5.78 16 3 N -0.59 -26.80 2.43 -706.33 -1.72 -28.52 16 4 C -0.26 -13.26 9.48 84.03 0.80 -12.47 16 5 H 0.05 2.70 7.93 -2.91 -0.02 2.67 16 6 C -0.03 -1.33 4.94 84.86 0.42 -0.91 16 7 N -0.91 -48.75 11.34 21.65 0.25 -48.50 16 8 Si 0.94 41.68 29.61 68.60 2.03 43.71 16 9 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 10 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 12 C 0.18 7.54 5.45 85.63 0.47 8.00 16 13 C -0.11 -4.22 5.48 -19.77 -0.11 -4.33 16 14 C -0.07 -2.39 9.86 22.46 0.22 -2.17 16 15 C -0.13 -4.21 9.84 22.38 0.22 -3.99 16 16 C 0.09 2.89 7.16 84.70 0.61 3.50 16 17 Br -0.01 -0.16 33.87 -20.37 -0.69 -0.85 16 18 N -0.48 -16.40 10.32 -190.75 -1.97 -18.37 16 19 C 0.10 3.44 10.86 84.66 0.92 4.36 16 20 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.04 1.57 8.04 -2.39 -0.02 1.55 16 24 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 25 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 26 H 0.05 1.99 8.02 -2.38 -0.02 1.97 16 27 H 0.08 4.11 5.29 -2.39 -0.01 4.10 16 28 H 0.13 4.95 8.06 -2.91 -0.02 4.93 16 29 H 0.16 4.08 8.06 -2.91 -0.02 4.06 16 30 H 0.17 5.04 8.06 -2.91 -0.02 5.01 16 Total: -1.00 -55.43 282.85 3.86 -51.57 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 1.13 Total: 7.91 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 4.83 Total: -6.95 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -3.44 Total: -95.39 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 35 Polarization: -0.16 SS G_CDS: -0.69 Total: -0.85 kcal Total: -55.43 3.86 -51.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308608553.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.835 kcal (2) G-P(sol) polarization free energy of solvation -55.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds