Wall clock time and date at job start Tue Mar 31 2020 05:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46429 * 190.34551 * 3 2 1 5 5 C 1.36937 * 119.99962 * 275.99485 * 4 3 2 6 6 H 1.08002 * 120.00481 * 181.10825 * 5 4 3 7 7 C 1.38813 * 120.00082 * 1.10834 * 5 4 3 8 8 N 1.31619 * 120.00025 * 27.09754 * 7 5 4 9 9 Si 1.86797 * 120.00201 * 207.09662 * 7 5 4 10 10 H 1.48503 * 109.46910 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47117 * 120.00068 * 9 7 5 12 12 H 1.48495 * 109.47421 * 240.00068 * 9 7 5 13 13 C 1.46495 * 120.00055 * 96.00238 * 4 3 2 14 14 C 1.50699 * 109.47041 * 269.99315 * 13 4 3 15 15 C 1.38180 * 120.42295 * 259.72221 * 14 13 4 16 16 N 1.31872 * 120.80566 * 179.77255 * 15 14 13 17 17 C 1.31907 * 121.77044 * 0.49809 * 16 15 14 18 18 C 1.38244 * 120.75718 * 359.76116 * 17 16 15 19 19 Cl 1.73604 * 120.43776 * 180.02562 * 18 17 16 20 20 C 1.38752 * 120.42049 * 80.00391 * 14 13 4 21 21 Cl 1.73603 * 120.80528 * 359.94949 * 20 14 13 22 22 H 4.40637 * 5.51537 * 179.97438 * 4 1 2 23 23 H 1.09002 * 109.47057 * 70.34922 * 3 2 1 24 24 H 1.09000 * 109.47051 * 310.34200 * 3 2 1 25 25 H 0.96999 * 120.00200 * 179.97438 * 8 7 5 26 26 H 1.08995 * 109.47590 * 29.99669 * 13 4 3 27 27 H 1.09004 * 109.47691 * 149.99775 * 13 4 3 28 28 H 1.07998 * 119.59799 * 0.02562 * 15 14 13 29 29 H 1.07997 * 119.62016 * 179.75424 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1336 1.3597 0.2481 5 6 3.2446 2.2472 -0.7889 6 1 3.6209 3.2435 -0.6091 7 6 2.8734 1.8665 -2.0711 8 7 1.9623 0.9321 -2.2423 9 14 3.6668 2.6801 -3.5536 10 1 4.6532 3.6909 -3.0946 11 1 4.3573 1.6514 -4.3723 12 1 2.6212 3.3444 -4.3724 13 6 3.5026 1.7692 1.6053 14 6 2.2967 2.3457 2.3014 15 6 2.1339 3.7142 2.4008 16 7 1.0794 4.2268 3.0044 17 6 0.1480 3.4636 3.5427 18 6 0.2442 2.0856 3.4878 19 17 -0.9868 1.0889 4.1986 20 6 1.3387 1.5089 2.8557 21 17 1.5033 -0.2167 2.7608 22 1 -1.0502 -0.0003 -0.0002 23 1 3.0096 -0.3448 -0.9678 24 1 3.0097 -0.6644 0.7833 25 1 1.7027 0.6663 -3.1383 26 1 3.8634 0.9035 2.1607 27 1 4.2886 2.5228 1.5566 28 1 2.8773 4.3721 1.9755 29 1 -0.6994 3.9204 4.0322 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308965185.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:43 Heat of formation + Delta-G solvation = 115.822206 kcal Electronic energy + Delta-G solvation = -18010.346106 eV Core-core repulsion = 14988.475797 eV Total energy + Delta-G solvation = -3021.870309 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 284.018 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.98266 -36.63420 -36.50537 -35.97703 -32.78486 -31.47521 -31.27436 -30.24699 -26.47929 -25.98286 -23.35685 -22.85459 -20.89801 -17.68078 -17.16633 -16.72117 -16.22581 -15.66257 -15.14652 -14.31850 -13.73396 -13.63592 -13.56004 -13.43916 -12.72963 -12.32930 -12.06077 -11.72632 -11.62169 -11.36906 -11.21360 -10.94798 -10.71631 -10.45878 -10.25766 -10.00859 -9.48022 -9.01045 -8.87920 -8.71427 -8.59971 -8.23867 -7.29943 -5.93167 -3.23821 1.13690 1.30173 2.03887 2.46001 3.30583 3.39857 3.41420 3.84734 4.22987 4.45198 4.57703 4.63497 4.88712 5.06782 5.19593 5.34180 5.57726 5.71824 5.79282 5.93376 5.99000 6.32626 6.44066 6.62524 6.71340 7.27870 7.44856 7.63977 8.05972 8.06927 8.95067 9.31681 9.60738 10.02183 11.07368 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.022490 B = 0.006969 C = 0.006220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.693168 B = 4016.745988 C = 4500.371069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.080 4.080 3 C 0.263 3.737 4 N -0.572 5.572 5 C -0.268 4.268 6 H 0.083 0.917 7 C 0.008 3.992 8 N -0.877 5.877 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.292 1.292 13 C 0.181 3.819 14 C -0.120 4.120 15 C 0.118 3.882 16 N -0.470 5.470 17 C 0.098 3.902 18 C -0.084 4.084 19 Cl -0.054 7.054 20 C 0.024 3.976 21 Cl -0.030 7.030 22 H 0.183 0.817 23 H 0.097 0.903 24 H 0.040 0.960 25 H 0.256 0.744 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.164 0.836 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.368 -0.242 11.133 11.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 C -0.083 4.083 3 C 0.139 3.861 4 N -0.289 5.289 5 C -0.396 4.396 6 H 0.101 0.899 7 C -0.192 4.192 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.219 1.219 13 C 0.053 3.947 14 C -0.128 4.128 15 C -0.040 4.040 16 N -0.179 5.179 17 C -0.060 4.060 18 C -0.114 4.114 19 Cl -0.025 7.025 20 C -0.013 4.013 21 Cl 0.000 7.000 22 H 0.201 0.799 23 H 0.115 0.885 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.182 0.818 29 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.531 0.324 10.997 11.014 hybrid contribution -0.497 -0.595 -1.058 1.312 sum -1.028 -0.271 9.938 9.995 Atomic orbital electron populations 1.23985 0.95147 1.04422 1.08830 1.23824 0.94847 0.96421 0.93201 1.18245 0.83299 0.84754 0.99793 1.44708 1.73174 1.09795 1.01188 1.19324 1.38192 0.96361 0.85697 0.89920 1.24841 0.97483 0.98871 0.98013 1.70231 1.27175 1.33222 1.21247 0.86270 0.79293 0.78622 0.82934 1.20130 1.21351 1.21944 1.20061 0.90956 0.98304 0.85414 1.22284 1.01425 0.94080 0.94966 1.22699 0.94759 0.92249 0.94278 1.67717 1.01950 1.39371 1.08872 1.22527 0.98254 0.87276 0.97948 1.21949 0.92586 0.93237 1.03668 1.98356 1.52712 1.69440 1.81998 1.20981 0.94821 0.87063 0.98394 1.98383 1.97139 1.08243 1.96271 0.79932 0.88497 0.94186 0.93295 0.91910 0.90859 0.81837 0.82097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.05 18.76 29.55 0.55 -6.50 15 2 C -0.08 -1.89 8.29 -37.12 -0.31 -2.20 15 3 C 0.26 5.97 4.83 -6.83 -0.03 5.93 15 4 N -0.57 -12.82 2.49 -177.95 -0.44 -13.26 15 5 C -0.27 -6.65 9.66 -15.06 -0.15 -6.80 15 6 H 0.08 1.99 7.96 -52.49 -0.42 1.57 15 7 C 0.01 0.20 4.97 -17.43 -0.09 0.11 15 8 N -0.88 -23.85 8.90 55.49 0.49 -23.36 15 9 Si 0.90 20.58 29.63 -169.99 -5.04 15.54 15 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 15 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 13 C 0.18 3.28 5.42 -5.20 -0.03 3.25 15 14 C -0.12 -2.16 5.48 -104.45 -0.57 -2.74 15 15 C 0.12 2.03 10.83 -17.56 -0.19 1.84 15 16 N -0.47 -8.01 10.36 -13.24 -0.14 -8.15 15 17 C 0.10 1.55 10.98 -17.52 -0.19 1.35 15 18 C -0.08 -1.39 6.35 -39.33 -0.25 -1.64 15 19 Cl -0.05 -0.78 28.12 -51.86 -1.46 -2.24 15 20 C 0.02 0.43 5.96 -39.14 -0.23 0.19 15 21 Cl -0.03 -0.52 21.40 -51.86 -1.11 -1.63 15 22 H 0.18 3.79 7.80 -54.08 -0.42 3.37 15 23 H 0.10 2.43 6.28 -51.93 -0.33 2.10 15 24 H 0.04 0.80 6.59 -51.93 -0.34 0.46 15 25 H 0.26 6.88 8.31 -40.82 -0.34 6.55 15 26 H 0.06 1.04 7.17 -51.93 -0.37 0.67 15 27 H 0.07 1.20 7.91 -51.93 -0.41 0.79 15 28 H 0.16 2.47 8.04 -52.49 -0.42 2.05 15 29 H 0.16 2.04 8.06 -52.49 -0.42 1.61 15 LS Contribution 281.88 15.07 4.25 4.25 Total: -1.00 -28.16 281.88 -7.20 -35.36 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -2.27 Total: 0.68 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -1.48 Total: -7.19 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -0.09 Total: -44.77 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.04 Total: 15.54 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -2.57 Total: -3.87 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.16 -7.20 -35.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308965185.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.181 kcal (2) G-P(sol) polarization free energy of solvation -28.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds