Wall clock time and date at job start Tue Mar 31 2020 06:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42103 * 108.57303 * 2 1 4 4 O 1.42099 * 108.58269 * 228.97350 * 2 1 3 5 5 C 1.81397 * 101.92209 * 114.48269 * 2 1 3 6 6 C 1.50700 * 109.47448 * 180.02562 * 5 2 1 7 7 O 1.21281 * 119.99650 * 0.02562 * 6 5 2 8 8 N 1.34776 * 120.00292 * 179.97438 * 6 5 2 9 9 C 1.39474 * 120.00016 * 185.07925 * 8 6 5 10 10 C 1.38593 * 119.57580 * 185.37049 * 9 8 6 11 11 C 1.40815 * 118.79129 * 179.70681 * 10 9 8 12 12 C 1.41538 * 120.99422 * 180.25132 * 11 10 9 13 13 H 1.07998 * 120.00306 * 153.74953 * 12 11 10 14 14 C 1.40034 * 120.00277 * 333.74953 * 12 11 10 15 15 N 1.30744 * 119.99801 * 350.15844 * 14 12 11 16 16 Si 1.86796 * 120.00202 * 170.15769 * 14 12 11 17 17 H 1.48503 * 109.46987 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46958 * 119.99814 * 16 14 12 19 19 H 1.48500 * 109.47291 * 240.00063 * 16 14 12 20 20 C 1.41166 * 118.00879 * 0.26601 * 11 10 9 21 21 C 1.37600 * 119.01609 * 0.02562 * 20 11 10 22 22 N 1.32080 * 121.10507 * 0.02562 * 21 20 11 23 23 H 1.09000 * 109.47762 * 305.51467 * 1 2 3 24 24 H 1.09008 * 109.47143 * 65.51948 * 1 2 3 25 25 H 1.09002 * 109.46933 * 185.51025 * 1 2 3 26 26 H 1.09003 * 109.47051 * 60.00581 * 5 2 1 27 27 H 1.09003 * 109.47517 * 300.00569 * 5 2 1 28 28 H 0.96998 * 119.99499 * 5.08694 * 8 6 5 29 29 H 1.08003 * 120.60742 * 359.97184 * 10 9 8 30 30 H 0.96998 * 119.99806 * 179.97438 * 15 14 12 31 31 H 1.07995 * 120.49511 * 179.97438 * 20 11 10 32 32 H 1.07994 * 119.44290 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2666 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7355 1.6153 6 6 3.6826 -0.8170 1.7958 7 8 4.4218 -0.4177 0.9211 8 7 4.1973 -1.3327 2.9297 9 6 5.5755 -1.3115 3.1426 10 6 6.1053 -1.9425 4.2571 11 6 7.4996 -1.9162 4.4526 12 6 8.0907 -2.5498 5.5717 13 1 9.1118 -2.8975 5.5184 14 6 7.3516 -2.7259 6.7480 15 7 6.1904 -2.1408 6.8842 16 14 8.0247 -3.7969 8.1225 17 1 9.3480 -4.3403 7.7237 18 1 8.1756 -2.9830 9.3555 19 1 7.0861 -4.9182 8.3812 20 6 8.2900 -1.2386 3.4992 21 6 7.6726 -0.6361 2.4272 22 7 6.3608 -0.6829 2.2806 23 1 -0.3634 0.5970 0.8364 24 1 -0.3634 0.4259 -0.9353 25 1 -0.3633 -1.0229 0.0987 26 1 1.7611 -1.7369 1.6665 27 1 1.7609 -0.1170 2.4043 28 1 3.6092 -1.7186 3.5975 29 1 5.4609 -2.4488 4.9605 30 1 5.6783 -2.2631 7.6988 31 1 9.3633 -1.1931 3.6099 32 1 8.2707 -0.1163 1.6935 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319266816.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:34 Heat of formation + Delta-G solvation = -60.178443 kcal Electronic energy + Delta-G solvation = -19692.948139 eV Core-core repulsion = 16360.613505 eV Total energy + Delta-G solvation = -3332.334634 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.77174 -37.91730 -36.95696 -35.95805 -34.48561 -33.86399 -31.03603 -30.50686 -29.63687 -28.17366 -26.06043 -22.24788 -21.89804 -20.00347 -18.85487 -17.82168 -17.47451 -16.68623 -16.30546 -15.82961 -15.60852 -15.19946 -14.97412 -14.25499 -14.05122 -13.61911 -13.50249 -13.45175 -13.07850 -12.88564 -12.64989 -12.16678 -12.00364 -11.94167 -11.48961 -11.23829 -11.20840 -10.97550 -10.87903 -10.38286 -10.19136 -9.91927 -9.75000 -9.47399 -8.05844 -7.83214 -7.14578 -6.81889 -4.68850 -0.19427 2.35626 2.65785 2.72937 2.98330 3.03889 3.06828 3.18823 3.28763 3.81070 3.84538 3.91216 4.51035 4.53681 4.60396 4.64896 4.93037 5.05852 5.35209 5.60794 5.89499 6.48357 6.52800 6.73664 6.87191 7.06114 7.28890 7.37386 7.60104 7.84341 8.10114 8.30666 8.55655 8.68080 8.71519 9.59850 10.03594 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.033896 B = 0.003865 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.860588 B = 7241.884910 C = 7837.961707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.665 4.665 2 S 2.458 3.542 3 O -0.920 6.920 4 O -0.922 6.922 5 C -0.659 4.659 6 C 0.526 3.474 7 O -0.471 6.471 8 N -0.646 5.646 9 C 0.329 3.671 10 C -0.235 4.235 11 C 0.141 3.859 12 C -0.453 4.453 13 H 0.083 0.917 14 C 0.075 3.925 15 N -0.796 5.796 16 Si 0.916 3.084 17 H -0.259 1.259 18 H -0.273 1.273 19 H -0.272 1.272 20 C -0.278 4.278 21 C 0.119 3.881 22 N -0.553 5.553 23 H 0.128 0.872 24 H 0.131 0.869 25 H 0.128 0.872 26 H 0.156 0.844 27 H 0.157 0.843 28 H 0.412 0.588 29 H 0.134 0.866 30 H 0.281 0.719 31 H 0.104 0.896 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.402 -0.207 -3.337 13.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.814 4.814 2 S 2.634 3.366 3 O -0.917 6.917 4 O -0.919 6.919 5 C -0.787 4.787 6 C 0.308 3.692 7 O -0.342 6.342 8 N -0.292 5.292 9 C 0.105 3.895 10 C -0.260 4.260 11 C 0.133 3.867 12 C -0.484 4.484 13 H 0.101 0.899 14 C -0.143 4.143 15 N -0.423 5.423 16 Si 0.740 3.260 17 H -0.183 1.183 18 H -0.198 1.198 19 H -0.197 1.197 20 C -0.302 4.302 21 C -0.035 4.035 22 N -0.272 5.272 23 H 0.147 0.853 24 H 0.149 0.851 25 H 0.146 0.854 26 H 0.174 0.826 27 H 0.175 0.825 28 H 0.247 0.753 29 H 0.152 0.848 30 H 0.092 0.908 31 H 0.122 0.878 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.919 0.846 -5.194 13.949 hybrid contribution -0.476 -1.368 2.673 3.040 sum -13.394 -0.521 -2.520 13.639 Atomic orbital electron populations 1.30427 1.27648 1.11466 1.11832 1.07091 0.77228 0.75892 0.76361 1.93601 1.78490 1.34145 1.85501 1.93594 1.78551 1.67237 1.52540 1.30926 1.04055 1.16036 1.27693 1.19147 0.86932 0.79542 0.83594 1.90938 1.59654 1.44059 1.39532 1.43221 1.06579 1.59197 1.20181 1.18176 0.82494 0.96241 0.92601 1.21669 0.97177 1.08595 0.98577 1.17598 0.90755 0.87428 0.90955 1.19634 0.99772 1.33242 0.95770 0.89904 1.25960 0.94280 0.94053 0.99998 1.69743 1.11651 1.33780 1.27098 0.86136 0.80211 0.79855 0.79812 1.18303 1.19847 1.19687 1.21961 0.99559 1.08134 1.00559 1.21782 0.89560 0.96547 0.95594 1.67149 1.05446 1.24168 1.30394 0.85343 0.85094 0.85372 0.82617 0.82521 0.75305 0.84809 0.90846 0.87758 0.85590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -3.54 10.62 101.05 1.07 -2.47 16 2 S 2.46 28.24 4.60 -107.50 -0.49 27.75 16 3 O -0.92 -14.82 17.94 -59.55 -1.07 -15.89 16 4 O -0.92 -14.60 17.95 -59.51 -1.07 -15.67 16 5 C -0.66 -6.80 6.29 36.01 0.23 -6.57 16 6 C 0.53 9.65 7.80 -10.99 -0.09 9.56 16 7 O -0.47 -11.01 13.92 2.56 0.04 -10.97 16 8 N -0.65 -12.27 5.39 -11.49 -0.06 -12.33 16 9 C 0.33 7.94 7.40 -154.70 -1.15 6.79 16 10 C -0.23 -5.85 8.61 -38.48 -0.33 -6.18 16 11 C 0.14 3.66 5.60 -106.55 -0.60 3.06 16 12 C -0.45 -11.45 9.14 -37.65 -0.34 -11.79 16 13 H 0.08 2.01 7.87 -52.49 -0.41 1.60 16 14 C 0.07 1.77 5.31 -17.34 -0.09 1.68 16 15 N -0.80 -19.10 10.70 55.55 0.59 -18.50 16 16 Si 0.92 17.59 29.57 -169.99 -5.03 12.56 16 17 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 18 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 19 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 20 C -0.28 -6.79 9.90 -38.70 -0.38 -7.18 16 21 C 0.12 2.89 11.15 -17.68 -0.20 2.69 16 22 N -0.55 -14.27 7.89 -12.52 -0.10 -14.37 16 23 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 24 H 0.13 0.63 8.14 -51.92 -0.42 0.20 16 25 H 0.13 0.40 8.14 -51.92 -0.42 -0.03 16 26 H 0.16 0.94 8.14 -51.92 -0.42 0.51 16 27 H 0.16 1.02 8.14 -51.92 -0.42 0.59 16 28 H 0.41 6.05 8.70 -40.82 -0.36 5.69 16 29 H 0.13 3.27 6.11 -52.48 -0.32 2.95 16 30 H 0.28 6.05 8.29 -40.82 -0.34 5.71 16 31 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 32 H 0.13 2.67 8.06 -52.49 -0.42 2.25 16 LS Contribution 298.90 15.07 4.50 4.50 Total: -1.00 -38.27 298.90 -7.74 -46.01 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -3.18 Total: 7.30 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -1.88 Total: -10.40 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.43 Total: -45.19 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -2.10 Total: -42.53 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Atomic # 16 Polarization: 28.24 SS G_CDS: -0.49 Total: 27.75 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -38.27 -7.74 -46.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319266816.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.169 kcal (2) G-P(sol) polarization free energy of solvation -38.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds