Wall clock time and date at job start Tue Mar 31 2020 05:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99542 * 2 1 4 4 H 1.48503 * 109.47174 * 239.99430 * 3 2 1 5 5 H 1.48501 * 109.47490 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47217 * 119.99964 * 3 2 1 7 7 C 1.37874 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00459 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99787 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47118 * 180.02562 * 9 7 2 11 11 S 1.81397 * 109.47430 * 179.97438 * 10 9 7 12 12 O 1.42106 * 110.54132 * 68.37083 * 11 10 9 13 13 O 1.42102 * 110.54303 * 291.62316 * 11 10 9 14 14 N 1.65593 * 104.45136 * 179.97438 * 11 10 9 15 15 C 1.34780 * 119.99751 * 64.99917 * 14 11 10 16 16 O 1.21506 * 120.00220 * 0.02562 * 15 14 11 17 17 C 1.48175 * 119.99946 * 179.97438 * 15 14 11 18 18 C 1.39302 * 119.72217 * 179.97438 * 17 15 14 19 19 C 1.38596 * 119.05879 * 179.97438 * 18 17 15 20 20 C 1.38630 * 118.48552 * 0.02562 * 19 18 17 21 21 C 1.38558 * 119.35539 * 0.25409 * 20 19 18 22 22 N 1.31532 * 120.90059 * 359.49177 * 21 20 19 23 23 H 0.96998 * 119.99986 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47668 * 59.99832 * 9 7 2 25 25 H 1.09007 * 109.46986 * 299.99582 * 9 7 2 26 26 H 1.09001 * 109.47248 * 59.99257 * 10 9 7 27 27 H 1.09007 * 109.46591 * 299.99505 * 10 9 7 28 28 H 0.97001 * 120.00432 * 244.99930 * 14 11 10 29 29 H 1.07999 * 120.47505 * 0.02670 * 18 17 15 30 30 H 1.07999 * 120.75338 * 180.02562 * 19 18 17 31 31 H 1.08002 * 120.31909 * 179.97438 * 20 19 18 32 32 H 1.07995 * 119.54967 * 179.74631 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 16 1.3385 -5.2330 0.0026 12 8 0.6649 -5.4206 -1.2346 13 8 0.6640 -5.4188 1.2394 14 7 2.5206 -6.3926 0.0032 15 6 3.3471 -6.5118 1.0612 16 8 3.2244 -5.7687 2.0147 17 6 4.4045 -7.5498 1.0621 18 6 5.2559 -7.6675 2.1584 19 6 6.2398 -8.6435 2.1449 20 6 6.3382 -9.4678 1.0346 21 6 5.4610 -9.2902 -0.0231 22 7 4.5331 -8.3589 0.0179 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5566 0.8904 26 1 2.8715 -3.6039 0.8922 27 1 2.8727 -3.6047 -0.8878 28 1 2.6183 -6.9861 -0.7578 29 1 5.1502 -7.0081 3.0072 30 1 6.9144 -8.7592 2.9803 31 1 7.0943 -10.2378 0.9926 32 1 5.5376 -9.9279 -0.8913 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319831866.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:22 Heat of formation + Delta-G solvation = -76.389236 kcal Electronic energy + Delta-G solvation = -19595.678378 eV Core-core repulsion = 16262.640791 eV Total energy + Delta-G solvation = -3333.037587 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.99939 -39.33368 -36.66444 -35.59679 -34.58227 -33.87946 -32.85815 -31.79500 -31.16028 -25.68781 -25.37602 -23.91841 -21.98971 -21.55958 -19.38060 -18.78413 -17.63339 -16.98936 -16.54835 -16.16640 -15.89222 -15.60190 -15.11945 -14.94798 -14.57966 -14.46649 -13.91524 -13.64906 -13.40024 -12.53075 -12.43597 -12.34930 -11.78114 -11.70160 -11.59541 -11.05491 -10.98639 -10.86207 -10.73227 -10.41161 -10.38565 -10.33328 -9.97996 -9.70078 -9.63908 -9.17016 -8.47481 -6.09970 -4.15474 0.17731 0.52069 0.79031 2.19286 2.69599 3.29987 3.34316 3.36526 3.44307 3.56374 4.07584 4.23067 4.38385 4.39401 4.54681 4.61809 4.64430 4.88954 5.02244 5.25195 5.30519 5.51850 5.63276 5.66929 5.74254 6.12021 6.47445 6.64265 7.19076 7.30803 7.37435 7.48300 7.82868 8.18918 8.87202 9.48859 11.01139 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.024999 B = 0.004087 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.778059 B = 6848.650531 C = 7469.278372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.576 4.576 11 S 2.565 3.435 12 O -0.950 6.950 13 O -0.937 6.937 14 N -1.044 6.044 15 C 0.596 3.404 16 O -0.480 6.480 17 C 0.074 3.926 18 C -0.105 4.105 19 C -0.082 4.082 20 C -0.146 4.146 21 C 0.098 3.902 22 N -0.455 5.455 23 H 0.266 0.734 24 H 0.035 0.965 25 H 0.037 0.963 26 H 0.131 0.869 27 H 0.122 0.878 28 H 0.437 0.563 29 H 0.154 0.846 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.324 -19.804 1.013 24.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.010 4.010 10 C -0.710 4.710 11 S 2.665 3.335 12 O -0.941 6.941 13 O -0.928 6.928 14 N -0.804 5.804 15 C 0.380 3.620 16 O -0.350 6.350 17 C -0.066 4.066 18 C -0.126 4.126 19 C -0.108 4.108 20 C -0.166 4.166 21 C -0.061 4.061 22 N -0.166 5.166 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.149 0.851 27 H 0.141 0.859 28 H 0.274 0.726 29 H 0.172 0.828 30 H 0.163 0.837 31 H 0.160 0.840 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 12.524 -19.251 1.041 22.990 hybrid contribution 1.715 0.645 0.213 1.845 sum 14.240 -18.607 1.254 23.464 Atomic orbital electron populations 1.69947 1.06106 1.27334 1.49475 1.25061 0.94992 0.99522 0.94868 0.86502 0.79467 0.82417 0.78713 1.20088 1.21065 1.20037 1.20942 0.93080 0.89594 1.52305 0.92003 1.18999 0.92622 0.90256 0.99092 1.30351 1.13752 1.16078 1.10846 1.06763 0.74932 0.77199 0.74566 1.93596 1.70335 1.85220 1.44956 1.93598 1.70209 1.84386 1.44558 1.55247 1.48231 1.50161 1.26806 1.17799 0.80080 0.82664 0.81425 1.90995 1.69252 1.42174 1.32597 1.20979 0.96960 0.96429 0.92217 1.22250 0.93550 0.97939 0.98842 1.21689 0.96952 0.93586 0.98526 1.22453 0.99968 0.99805 0.94387 1.22848 0.90316 0.94560 0.98413 1.67490 1.20253 1.03672 1.25225 0.92452 0.94676 0.94514 0.85055 0.85918 0.72635 0.82823 0.83714 0.83968 0.81673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 9 C 0.03 0.78 4.98 -27.88 -0.14 0.64 16 10 C -0.58 -11.74 5.82 37.16 0.22 -11.53 16 11 S 2.57 48.99 5.11 -107.50 -0.55 48.44 16 12 O -0.95 -19.64 18.08 -57.54 -1.04 -20.68 16 13 O -0.94 -21.09 17.04 -64.79 -1.10 -22.19 16 14 N -1.04 -15.42 5.59 30.60 0.17 -15.25 16 15 C 0.60 8.97 7.55 -12.18 -0.09 8.87 16 16 O -0.48 -8.54 14.42 -11.76 -0.17 -8.71 16 17 C 0.07 0.88 6.75 -83.01 -0.56 0.32 16 18 C -0.10 -1.00 9.63 -39.05 -0.38 -1.38 16 19 C -0.08 -0.52 10.17 -39.30 -0.40 -0.92 16 20 C -0.15 -0.80 10.11 -39.32 -0.40 -1.20 16 21 C 0.10 0.70 11.18 -17.56 -0.20 0.50 16 22 N -0.45 -4.78 9.54 -9.80 -0.09 -4.87 16 23 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.04 1.02 8.14 -51.92 -0.42 0.60 16 26 H 0.13 2.60 7.19 -51.92 -0.37 2.23 16 27 H 0.12 2.17 8.14 -51.92 -0.42 1.75 16 28 H 0.44 5.23 8.12 -34.47 -0.28 4.95 16 29 H 0.15 1.40 7.64 -52.49 -0.40 1.00 16 30 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16 31 H 0.14 0.33 8.06 -52.49 -0.42 -0.10 16 32 H 0.17 0.66 8.06 -52.49 -0.42 0.23 16 LS Contribution 302.30 15.07 4.56 4.56 Total: -1.00 -37.04 302.30 -8.00 -45.04 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -3.13 Total: 1.34 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -2.36 Total: -18.11 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.81 Total: -46.17 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -2.31 Total: -51.58 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 48.99 SS G_CDS: -0.55 Total: 48.44 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -37.04 -8.00 -45.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319831866.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.352 kcal (2) G-P(sol) polarization free energy of solvation -37.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds