Wall clock time and date at job start Tue Mar 31 2020 06:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42101 * 110.53994 * 2 1 4 4 O 1.42097 * 110.54222 * 223.25220 * 2 1 3 5 5 C 1.76196 * 104.44843 * 111.62504 * 2 1 3 6 6 C 1.38125 * 120.04116 * 115.30131 * 5 2 1 7 7 C 1.38261 * 120.07910 * 180.29592 * 6 5 2 8 8 C 1.38303 * 120.14748 * 359.67963 * 7 6 5 9 9 C 1.38090 * 120.07502 * 0.02562 * 8 7 6 10 10 C 1.38890 * 120.03883 * 294.99916 * 5 2 1 11 11 N 1.39675 * 120.07526 * 0.02562 * 10 5 2 12 12 N 1.40102 * 120.00318 * 179.72458 * 11 10 5 13 13 C 1.34774 * 120.00130 * 179.97438 * 12 11 10 14 14 O 1.21693 * 120.00012 * 359.72572 * 13 12 11 15 15 C 1.46372 * 120.00283 * 179.97438 * 13 12 11 16 16 H 1.08003 * 119.99711 * 354.02911 * 15 13 12 17 17 C 1.40042 * 120.00353 * 174.02723 * 15 13 12 18 18 N 1.30671 * 120.00122 * 6.20001 * 17 15 13 19 19 Si 1.86800 * 120.00350 * 186.19801 * 17 15 13 20 20 H 1.48497 * 109.47350 * 94.98100 * 19 17 15 21 21 H 1.48497 * 109.47171 * 214.98694 * 19 17 15 22 22 H 1.48507 * 109.46667 * 334.98404 * 19 17 15 23 23 H 1.08999 * 109.47734 * 308.37456 * 1 2 3 24 24 H 1.09003 * 109.47262 * 68.37845 * 1 2 3 25 25 H 1.09007 * 109.46835 * 188.37206 * 1 2 3 26 26 H 1.08000 * 119.95908 * 0.02562 * 6 5 2 27 27 H 1.07995 * 119.92563 * 179.70052 * 7 6 5 28 28 H 1.07998 * 119.96683 * 180.02562 * 8 7 6 29 29 H 1.08003 * 120.03686 * 180.02562 * 9 8 7 30 30 H 0.97006 * 119.99539 * 359.71938 * 11 10 5 31 31 H 0.96998 * 119.99844 * 0.02562 * 12 11 10 32 32 H 0.97004 * 120.00166 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9691 -0.9118 5 6 2.2536 -0.6288 1.5861 6 6 2.9210 -1.8335 1.6917 7 6 3.2609 -2.3306 2.9363 8 6 2.9401 -1.6208 4.0791 9 6 2.2783 -0.4128 3.9805 10 6 1.9350 0.0894 2.7315 11 7 1.2653 1.3107 2.6282 12 7 0.9396 2.0311 3.7848 13 6 0.2938 3.2099 3.6851 14 8 -0.0019 3.6509 2.5901 15 6 -0.0470 3.9623 4.8934 16 1 0.1315 3.5300 5.8670 17 6 -0.6045 5.2425 4.7873 18 7 -0.9327 5.7171 3.6149 19 14 -0.8790 6.2720 6.3217 20 1 0.2794 7.1790 6.5231 21 1 -2.1165 7.0772 6.1627 22 1 -1.0181 5.3778 7.4992 23 1 -0.3634 0.6379 0.8056 24 1 -0.3634 0.3787 -0.9554 25 1 -0.3633 -1.0168 0.1496 26 1 3.1737 -2.3899 0.8012 27 1 3.7784 -3.2751 3.0162 28 1 3.2074 -2.0116 5.0497 29 1 2.0285 0.1412 4.8733 30 1 1.0258 1.6602 1.7555 31 1 1.1795 1.6819 4.6573 32 1 -1.3185 6.6041 3.5413 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320381437.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:27 Heat of formation + Delta-G solvation = -37.361179 kcal Electronic energy + Delta-G solvation = -20158.039143 eV Core-core repulsion = 16826.693940 eV Total energy + Delta-G solvation = -3331.345203 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.51606 -37.64645 -36.97736 -35.81113 -34.95537 -32.72598 -31.64679 -30.77374 -29.44749 -28.17150 -26.05450 -23.33194 -22.07987 -20.47466 -19.12938 -18.36258 -17.31041 -16.83623 -16.42768 -16.01665 -15.56507 -15.23723 -14.66161 -14.40082 -14.22610 -13.95304 -13.51403 -13.23660 -13.07817 -12.71473 -12.68748 -12.28909 -11.93473 -11.83192 -11.54637 -11.32483 -11.30106 -10.96753 -10.89284 -10.75887 -10.44377 -10.41287 -9.26859 -9.09605 -8.65257 -8.07604 -6.83591 -6.47810 -4.93249 0.17797 1.08872 1.66017 2.66632 3.01757 3.02178 3.10493 3.13838 3.61909 3.95738 3.97903 4.27090 4.32258 4.78244 4.82819 4.87587 5.06603 5.12054 5.44714 5.48000 5.60342 5.68264 5.79685 6.03905 6.12574 6.31246 6.57023 6.85273 7.11499 7.19360 7.71626 7.98762 8.28551 8.73516 9.02971 10.24587 10.44883 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.024219 B = 0.004954 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.854339 B = 5650.485314 C = 6596.272924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.496 3.504 3 O -0.933 6.933 4 O -0.946 6.946 5 C -0.746 4.746 6 C 0.029 3.971 7 C -0.216 4.216 8 C -0.015 4.015 9 C -0.220 4.220 10 C 0.312 3.688 11 N -0.521 5.521 12 N -0.562 5.562 13 C 0.551 3.449 14 O -0.573 6.573 15 C -0.532 4.532 16 H 0.076 0.924 17 C 0.087 3.913 18 N -0.759 5.759 19 Si 0.919 3.081 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.263 1.263 23 H 0.131 0.869 24 H 0.134 0.866 25 H 0.134 0.866 26 H 0.140 0.860 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.427 0.573 31 H 0.407 0.593 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.226 -13.599 -0.165 13.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.677 3.323 3 O -0.930 6.930 4 O -0.943 6.943 5 C -0.842 4.842 6 C 0.010 3.990 7 C -0.238 4.238 8 C -0.035 4.035 9 C -0.244 4.244 10 C 0.195 3.805 11 N -0.236 5.236 12 N -0.315 5.315 13 C 0.356 3.644 14 O -0.453 6.453 15 C -0.570 4.570 16 H 0.095 0.905 17 C -0.135 4.135 18 N -0.387 5.387 19 Si 0.743 3.257 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.187 1.187 23 H 0.150 0.850 24 H 0.152 0.848 25 H 0.153 0.847 26 H 0.158 0.842 27 H 0.141 0.859 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.272 0.728 31 H 0.246 0.754 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.342 -12.594 -1.601 13.128 hybrid contribution -0.553 0.219 1.593 1.701 sum 2.789 -12.375 -0.008 12.685 Atomic orbital electron populations 1.30329 1.26140 1.12143 1.12219 1.05100 0.77777 0.74819 0.74645 1.93647 1.76925 1.36227 1.86208 1.93519 1.77578 1.61781 1.61472 1.29425 1.26356 1.10452 1.17975 1.20593 0.89117 0.90713 0.98607 1.20879 1.08411 1.02194 0.92335 1.21095 0.91476 0.92328 0.98568 1.20568 1.08724 0.99555 0.95587 1.17249 0.86561 0.82895 0.93815 1.44152 1.58232 1.16378 1.04860 1.46086 1.65582 1.21693 0.98132 1.18745 0.77224 0.76747 0.91640 1.90650 1.57971 1.67778 1.28881 1.20640 1.44318 1.00870 0.91174 0.90542 1.25726 0.92994 0.97525 0.97212 1.70004 1.28424 1.16075 1.24160 0.86165 0.78421 0.79749 0.81372 1.19525 1.20220 1.18654 0.85013 0.84778 0.84729 0.84212 0.85860 0.85666 0.85480 0.72832 0.75370 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -7.77 10.57 101.05 1.07 -6.70 16 2 S 2.50 36.89 5.16 -107.50 -0.56 36.33 16 3 O -0.93 -17.96 16.28 -57.54 -0.94 -18.89 16 4 O -0.95 -14.80 16.74 -57.54 -0.96 -15.77 16 5 C -0.75 -11.31 5.60 -39.38 -0.22 -11.53 16 6 C 0.03 0.38 9.50 -39.61 -0.38 0.01 16 7 C -0.22 -2.54 10.04 -39.55 -0.40 -2.94 16 8 C -0.02 -0.18 10.04 -39.61 -0.40 -0.58 16 9 C -0.22 -3.20 9.48 -39.38 -0.37 -3.57 16 10 C 0.31 5.24 6.66 -83.79 -0.56 4.68 16 11 N -0.52 -10.43 5.91 32.41 0.19 -10.23 16 12 N -0.56 -12.19 6.21 30.19 0.19 -12.01 16 13 C 0.55 14.86 7.86 -12.99 -0.10 14.76 16 14 O -0.57 -17.65 14.88 5.19 0.08 -17.57 16 15 C -0.53 -13.95 9.53 -35.63 -0.34 -14.29 16 16 H 0.08 1.78 7.86 -52.48 -0.41 1.37 16 17 C 0.09 2.28 5.49 -17.37 -0.10 2.18 16 18 N -0.76 -21.53 11.85 55.55 0.66 -20.88 16 19 Si 0.92 18.85 29.56 -169.99 -5.03 13.82 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 23 H 0.13 1.80 6.60 -51.92 -0.34 1.46 16 24 H 0.13 1.30 8.14 -51.92 -0.42 0.88 16 25 H 0.13 1.20 8.14 -51.92 -0.42 0.78 16 26 H 0.14 1.60 7.21 -52.49 -0.38 1.23 16 27 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 28 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.13 1.69 6.20 -52.48 -0.33 1.37 16 30 H 0.43 8.93 4.12 -182.59 -0.75 8.18 16 31 H 0.41 7.42 6.58 -182.60 -1.20 6.22 16 32 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 LS Contribution 291.96 15.07 4.40 4.40 Total: -1.00 -36.28 291.96 -8.00 -44.28 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -4.24 Total: 14.50 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -1.79 Total: -17.99 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 1.04 Total: -43.12 kcal Atomic # 8 Polarization: -50.41 SS G_CDS: -1.82 Total: -52.23 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Atomic # 16 Polarization: 36.89 SS G_CDS: -0.56 Total: 36.33 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -36.28 -8.00 -44.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320381437.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.918 kcal (2) G-P(sol) polarization free energy of solvation -36.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds