Wall clock time and date at job start Tue Mar 31 2020 06:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42100 * 110.54474 * 2 1 4 4 O 1.42105 * 110.54099 * 223.24831 * 2 1 3 5 5 C 1.76205 * 104.44562 * 111.62615 * 2 1 3 6 6 C 1.38305 * 119.96011 * 270.27317 * 5 2 1 7 7 C 1.38265 * 120.14772 * 180.23969 * 6 5 2 8 8 C 1.38133 * 120.07406 * 359.48386 * 7 6 5 9 9 C 1.38886 * 119.92283 * 0.26137 * 8 7 6 10 10 N 1.39675 * 120.07181 * 179.97438 * 9 8 7 11 11 N 1.40101 * 120.00175 * 0.02562 * 10 9 8 12 12 C 1.34774 * 119.99854 * 180.02562 * 11 10 9 13 13 O 1.21686 * 120.00195 * 359.97438 * 12 11 10 14 14 C 1.46373 * 119.99893 * 179.97438 * 12 11 10 15 15 H 1.08004 * 120.00045 * 359.97438 * 14 12 11 16 16 C 1.40048 * 120.00265 * 179.97438 * 14 12 11 17 17 N 1.30678 * 119.99810 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 120.00136 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46888 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47099 * 119.99775 * 18 16 14 21 21 H 1.48498 * 109.46672 * 239.99883 * 18 16 14 22 22 C 1.38081 * 119.95997 * 90.00328 * 5 2 1 23 23 H 1.08998 * 109.47027 * 308.38007 * 1 2 3 24 24 H 1.09007 * 109.46753 * 68.37362 * 1 2 3 25 25 H 1.09002 * 109.47356 * 188.37132 * 1 2 3 26 26 H 1.08001 * 119.92830 * 359.97438 * 6 5 2 27 27 H 1.08002 * 119.96571 * 179.77020 * 7 6 5 28 28 H 1.07999 * 120.03792 * 180.23518 * 8 7 6 29 29 H 0.97003 * 119.99675 * 179.97438 * 10 9 8 30 30 H 0.96993 * 119.99568 * 359.97438 * 11 10 9 31 31 H 0.97001 * 119.99814 * 179.97438 * 17 16 14 32 32 H 1.07998 * 120.04523 * 0.03312 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9117 5 6 2.2536 -0.6289 1.5862 6 6 2.4203 0.2380 2.6509 7 6 2.7701 -0.2508 3.8961 8 6 2.9437 -1.6083 4.0831 9 6 2.7718 -2.4821 3.0173 10 7 2.9471 -3.8553 3.2027 11 7 3.2961 -4.3528 4.4651 12 6 3.4658 -5.6778 4.6438 13 8 3.3153 -6.4421 3.7090 14 6 3.8310 -6.1976 5.9626 15 1 3.9649 -5.5192 6.7922 16 6 4.0067 -7.5745 6.1485 17 7 3.8442 -8.3953 5.1448 18 14 4.4721 -8.2378 7.8317 19 1 4.5945 -7.1111 8.7912 20 1 3.4218 -9.1767 8.3014 21 1 5.7704 -8.9528 7.7402 22 6 2.4257 -1.9871 1.7661 23 1 -0.3633 0.6380 0.8056 24 1 -0.3633 0.3788 -0.9554 25 1 -0.3634 -1.0167 0.1496 26 1 2.2813 1.2995 2.5084 27 1 2.9032 0.4291 4.7246 28 1 3.2131 -1.9898 5.0569 29 1 2.8264 -4.4646 2.4577 30 1 3.4164 -3.7436 5.2101 31 1 3.9663 -9.3490 5.2735 32 1 2.2916 -2.6638 0.9352 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320690936.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:29 Heat of formation + Delta-G solvation = -40.014566 kcal Electronic energy + Delta-G solvation = -19307.398844 eV Core-core repulsion = 15975.938581 eV Total energy + Delta-G solvation = -3331.460263 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.41922 -37.54744 -37.14698 -35.99392 -34.88560 -32.69698 -31.38986 -31.00255 -29.65802 -28.10857 -26.00424 -23.31910 -22.16721 -20.44481 -19.11310 -18.41753 -17.27419 -16.56940 -16.29645 -15.90505 -15.80672 -15.69301 -15.01334 -14.25772 -13.97992 -13.78598 -13.56244 -13.49058 -13.38129 -12.74500 -12.69792 -12.13865 -12.08345 -12.04899 -11.55604 -11.40657 -11.32288 -11.18785 -10.88825 -10.75252 -10.58425 -10.39020 -9.22491 -9.10110 -8.62219 -8.03713 -6.61214 -6.45408 -4.90999 -0.02281 0.97539 1.61369 2.77012 2.90901 3.00879 3.11137 3.15966 3.56211 3.95322 3.98184 4.05490 4.34071 4.56792 4.73746 4.88407 5.06215 5.18133 5.28283 5.42241 5.52196 5.57241 5.83874 5.93688 6.15830 6.33630 6.47363 6.88175 7.19257 7.21150 7.82992 8.06558 8.49379 8.75954 9.09933 10.29585 10.47689 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.040500 B = 0.003304 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.189802 B = 8473.656267 C = 8950.691133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.502 3.498 3 O -0.942 6.942 4 O -0.939 6.939 5 C -0.599 4.599 6 C -0.110 4.110 7 C -0.080 4.080 8 C -0.161 4.161 9 C 0.218 3.782 10 N -0.528 5.528 11 N -0.566 5.566 12 C 0.553 3.447 13 O -0.577 6.577 14 C -0.534 4.534 15 H 0.075 0.925 16 C 0.087 3.913 17 N -0.761 5.761 18 Si 0.918 3.082 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.116 4.116 23 H 0.131 0.869 24 H 0.128 0.872 25 H 0.132 0.868 26 H 0.133 0.867 27 H 0.127 0.873 28 H 0.125 0.875 29 H 0.430 0.570 30 H 0.403 0.597 31 H 0.272 0.728 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.642 15.951 -3.734 17.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.683 3.317 3 O -0.939 6.939 4 O -0.936 6.936 5 C -0.687 4.687 6 C -0.133 4.133 7 C -0.100 4.100 8 C -0.186 4.186 9 C 0.106 3.894 10 N -0.244 5.244 11 N -0.317 5.317 12 C 0.359 3.641 13 O -0.458 6.458 14 C -0.572 4.572 15 H 0.093 0.907 16 C -0.134 4.134 17 N -0.389 5.389 18 Si 0.742 3.258 19 H -0.186 1.186 20 H -0.199 1.199 21 H -0.199 1.199 22 C -0.141 4.141 23 H 0.150 0.850 24 H 0.147 0.853 25 H 0.151 0.849 26 H 0.151 0.849 27 H 0.145 0.855 28 H 0.143 0.857 29 H 0.273 0.727 30 H 0.242 0.758 31 H 0.083 0.917 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.130 15.237 -4.953 17.155 hybrid contribution -0.210 -0.621 1.679 1.802 sum -6.340 14.616 -3.275 16.265 Atomic orbital electron populations 1.30222 1.26099 1.12185 1.11503 1.05014 0.77687 0.74511 0.74529 1.93568 1.77305 1.36727 1.86318 1.93591 1.77180 1.61535 1.61336 1.30035 1.15944 1.01683 1.21080 1.20496 1.02017 0.98742 0.91999 1.20923 0.97495 0.94499 0.97073 1.20773 1.06135 0.93418 0.98280 1.17887 0.94472 0.83106 0.93970 1.43551 1.73140 1.02417 1.05281 1.45900 1.78054 1.08363 0.99406 1.18637 0.77768 0.77106 0.90633 1.90629 1.56469 1.55268 1.43409 1.20697 1.50565 0.92553 0.93360 0.90710 1.25728 0.92938 0.96543 0.98235 1.70015 1.34092 1.03773 1.31046 0.86144 0.78656 0.79353 0.81666 1.18566 1.19941 1.19930 1.20100 1.04208 0.93739 0.96070 0.85007 0.85327 0.84890 0.84940 0.85489 0.85710 0.72749 0.75835 0.91678 0.84379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.79 10.80 101.05 1.09 -2.70 16 2 S 2.50 25.50 5.80 -107.50 -0.62 24.88 16 3 O -0.94 -12.05 17.13 -57.54 -0.99 -13.04 16 4 O -0.94 -12.96 17.12 -57.54 -0.99 -13.94 16 5 C -0.60 -7.38 5.65 -39.61 -0.22 -7.61 16 6 C -0.11 -1.30 9.47 -39.55 -0.37 -1.67 16 7 C -0.08 -0.96 10.04 -39.61 -0.40 -1.36 16 8 C -0.16 -2.31 9.48 -39.38 -0.37 -2.68 16 9 C 0.22 3.51 6.72 -83.79 -0.56 2.94 16 10 N -0.53 -10.15 6.45 32.41 0.21 -9.94 16 11 N -0.57 -12.15 6.21 30.19 0.19 -11.96 16 12 C 0.55 14.88 7.86 -12.99 -0.10 14.78 16 13 O -0.58 -17.69 14.86 5.20 0.08 -17.61 16 14 C -0.53 -14.09 9.54 -35.63 -0.34 -14.43 16 15 H 0.07 1.77 7.85 -52.48 -0.41 1.36 16 16 C 0.09 2.28 5.50 -17.36 -0.10 2.18 16 17 N -0.76 -21.68 11.83 55.55 0.66 -21.02 16 18 Si 0.92 18.94 29.56 -169.99 -5.02 13.92 16 19 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 C -0.12 -1.65 9.32 -39.38 -0.37 -2.02 16 23 H 0.13 0.56 8.14 -51.92 -0.42 0.14 16 24 H 0.13 0.53 8.14 -51.92 -0.42 0.10 16 25 H 0.13 0.67 8.14 -51.92 -0.42 0.25 16 26 H 0.13 1.28 7.57 -52.49 -0.40 0.88 16 27 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.13 1.67 6.20 -52.49 -0.33 1.34 16 29 H 0.43 8.54 8.01 -182.59 -1.46 7.08 16 30 H 0.40 7.44 6.58 -182.60 -1.20 6.24 16 31 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 32 H 0.14 1.83 7.57 -52.49 -0.40 1.43 16 LS Contribution 299.22 15.07 4.51 4.51 Total: -1.00 -36.93 299.22 -8.75 -45.67 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -5.02 Total: 11.10 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -1.75 Total: -12.56 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 1.05 Total: -42.92 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -1.89 Total: -44.60 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Atomic # 16 Polarization: 25.50 SS G_CDS: -0.62 Total: 24.88 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -36.93 -8.75 -45.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320690936.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.659 kcal (2) G-P(sol) polarization free energy of solvation -36.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds