Wall clock time and date at job start Tue Mar 31 2020 05:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86801 * 120.00211 * 2 1 4 4 H 1.48499 * 109.46829 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47214 * 300.00187 * 3 2 1 6 6 H 1.48506 * 109.46725 * 60.00095 * 3 2 1 7 7 C 1.40128 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99966 * 180.02562 * 7 2 1 9 9 C 1.46174 * 119.99910 * 0.02562 * 7 2 1 10 10 O 1.21738 * 120.00018 * 0.02562 * 9 7 2 11 11 N 1.34777 * 119.99847 * 179.97438 * 9 7 2 12 12 C 1.39528 * 119.99848 * 184.60915 * 11 9 7 13 13 C 1.39045 * 120.08706 * 324.87478 * 12 11 9 14 14 C 1.38040 * 119.91883 * 180.02562 * 13 12 11 15 15 C 1.38349 * 120.08358 * 359.72647 * 14 13 12 16 16 C 1.38313 * 120.16634 * 0.54558 * 15 14 13 17 17 C 1.50697 * 119.95624 * 179.72757 * 16 15 14 18 18 S 1.81401 * 109.47098 * 269.72444 * 17 16 15 19 19 N 1.65597 * 104.45080 * 180.02562 * 18 17 16 20 20 O 1.42101 * 110.54008 * 68.37804 * 18 17 16 21 21 O 1.42100 * 110.54693 * 291.63187 * 18 17 16 22 22 C 1.38081 * 120.08046 * 359.45336 * 16 15 14 23 23 H 0.96996 * 119.99635 * 0.02562 * 1 2 3 24 24 H 0.97003 * 119.99916 * 4.61217 * 11 9 7 25 25 H 1.08006 * 120.04220 * 359.97438 * 13 12 11 26 26 H 1.08006 * 119.95827 * 180.02562 * 14 13 12 27 27 H 1.07999 * 119.91689 * 180.29503 * 15 14 13 28 28 H 1.09003 * 109.46915 * 149.72961 * 17 16 15 29 29 H 1.08991 * 109.47368 * 29.72872 * 17 16 15 30 30 H 0.96997 * 119.99869 * 359.97438 * 19 18 17 31 31 H 0.97001 * 119.99877 * 179.72902 * 19 18 17 32 32 H 1.07997 * 120.04207 * 180.25075 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.7005 1.3462 0.0006 5 1 1.8818 2.3964 -1.2124 6 1 1.8817 2.3964 1.2126 7 6 2.0070 -1.2136 0.0005 8 1 3.0871 -1.2136 0.0010 9 6 1.2761 -2.4794 0.0005 10 8 0.0588 -2.4794 -0.0004 11 7 1.9500 -3.6466 0.0005 12 6 1.2557 -4.8530 -0.0966 13 6 0.0099 -4.9907 0.5054 14 6 -0.6737 -6.1859 0.4076 15 6 -0.1233 -7.2443 -0.2931 16 6 1.1182 -7.1131 -0.8885 17 6 1.7159 -8.2710 -1.6454 18 16 2.7094 -9.2839 -0.5150 19 7 3.3005 -10.5046 -1.4652 20 8 1.8749 -9.9447 0.4264 21 8 3.8672 -8.5743 -0.0964 22 6 1.8080 -5.9206 -0.7950 23 1 -0.4849 0.8400 -0.0004 24 1 2.9177 -3.6480 0.0681 25 1 -0.4221 -4.1637 1.0495 26 1 -1.6417 -6.2934 0.8745 27 1 -0.6627 -8.1767 -0.3719 28 1 2.3504 -7.8924 -2.4468 29 1 0.9170 -8.8783 -2.0706 30 1 3.0754 -10.5375 -2.4081 31 1 3.8746 -11.1847 -1.0795 32 1 2.7755 -5.8175 -1.2636 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321347021.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:00 Heat of formation + Delta-G solvation = -87.889789 kcal Electronic energy + Delta-G solvation = -19575.526008 eV Core-core repulsion = 16241.989720 eV Total energy + Delta-G solvation = -3333.536288 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.41060 -37.22543 -37.02749 -35.93911 -33.80896 -33.39406 -32.53049 -32.32555 -29.26247 -27.25135 -26.22339 -22.16743 -21.87469 -19.88517 -19.34729 -17.78549 -17.61315 -17.51559 -16.22468 -16.01024 -15.66280 -15.43983 -15.39891 -14.74469 -14.10195 -13.65958 -13.22716 -12.94018 -12.67748 -12.46120 -12.21080 -12.14652 -12.09633 -11.97900 -11.43206 -11.32528 -11.18255 -10.99839 -10.74915 -10.64823 -10.63861 -10.33578 -9.37411 -8.94279 -8.44483 -7.77712 -7.21287 -6.38892 -4.86147 0.05102 1.78117 1.87047 2.76633 3.04088 3.12791 3.17337 3.54472 3.95144 4.13646 4.14668 4.32096 4.47127 4.61882 4.88957 5.26638 5.37267 5.51215 5.59000 5.73403 5.85775 6.01522 6.20691 6.35513 6.69448 6.78125 6.97789 7.01087 7.23688 7.29689 7.67912 7.99460 8.12319 8.81370 9.16099 10.33005 10.51978 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.035760 B = 0.003688 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.816299 B = 7589.894751 C = 8125.129257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.074 0.926 9 C 0.542 3.458 10 O -0.560 6.560 11 N -0.700 5.700 12 C 0.193 3.807 13 C -0.115 4.115 14 C -0.101 4.101 15 C -0.146 4.146 16 C -0.087 4.087 17 C -0.559 4.559 18 S 2.607 3.393 19 N -1.257 6.257 20 O -0.960 6.960 21 O -0.958 6.958 22 C -0.158 4.158 23 H 0.272 0.728 24 H 0.396 0.604 25 H 0.148 0.852 26 H 0.123 0.877 27 H 0.120 0.880 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.410 0.590 31 H 0.417 0.583 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.627 -16.595 -4.854 17.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.092 0.908 9 C 0.349 3.651 10 O -0.442 6.442 11 N -0.343 5.343 12 C 0.094 3.906 13 C -0.136 4.136 14 C -0.120 4.120 15 C -0.167 4.167 16 C -0.090 4.090 17 C -0.688 4.688 18 S 2.700 3.300 19 N -0.929 5.929 20 O -0.949 6.949 21 O -0.947 6.947 22 C -0.181 4.181 23 H 0.083 0.917 24 H 0.229 0.771 25 H 0.166 0.834 26 H 0.141 0.859 27 H 0.138 0.862 28 H 0.158 0.842 29 H 0.158 0.842 30 H 0.236 0.764 31 H 0.247 0.753 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.722 -16.120 -3.793 16.973 hybrid contribution 0.821 0.580 -1.088 1.481 sum 4.543 -15.540 -4.881 16.910 Atomic orbital electron populations 1.69993 1.07182 1.27761 1.33743 1.25757 0.94719 1.00582 0.92462 0.86208 0.80480 0.81128 0.78384 1.18593 1.19999 1.19956 1.20898 0.93924 0.88896 1.53584 0.90828 1.18420 0.87497 0.82067 0.77074 1.90613 1.13684 1.85952 1.53986 1.44158 1.09870 1.04094 1.76148 1.17929 0.93251 0.86512 0.92955 1.21690 0.95059 0.97755 0.99107 1.21021 0.99668 0.92640 0.98660 1.20854 0.95165 0.99491 1.01173 1.18367 0.96289 0.92962 1.01407 1.29223 1.14656 1.10438 1.14518 1.05129 0.75430 0.74471 0.74945 1.53281 1.68823 1.47044 1.23721 1.93596 1.69897 1.72759 1.58623 1.93608 1.47588 1.73856 1.79630 1.20837 1.01692 0.93309 1.02221 0.91744 0.77067 0.83430 0.85878 0.86183 0.84162 0.84175 0.76414 0.75328 0.85733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.73 11.82 55.55 0.66 -21.07 16 2 C 0.09 2.29 5.50 -17.35 -0.10 2.20 16 3 Si 0.91 19.30 29.56 -169.99 -5.02 14.28 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.54 -14.50 9.54 -35.69 -0.34 -14.84 16 8 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 9 C 0.54 14.84 7.58 -13.07 -0.10 14.74 16 10 O -0.56 -17.09 12.45 5.15 0.06 -17.03 16 11 N -0.70 -15.68 5.32 -11.20 -0.06 -15.74 16 12 C 0.19 4.03 6.30 -83.77 -0.53 3.50 16 13 C -0.11 -2.41 8.69 -39.35 -0.34 -2.75 16 14 C -0.10 -1.75 10.04 -39.61 -0.40 -2.14 16 15 C -0.15 -2.25 9.70 -39.51 -0.38 -2.63 16 16 C -0.09 -1.31 5.14 -104.65 -0.54 -1.85 16 17 C -0.56 -5.35 6.22 36.00 0.22 -5.13 16 18 S 2.61 28.33 5.95 -107.50 -0.64 27.69 16 19 N -1.26 -7.79 9.43 60.35 0.57 -7.22 16 20 O -0.96 -13.89 18.10 -57.54 -1.04 -14.93 16 21 O -0.96 -14.29 18.10 -57.54 -1.04 -15.34 16 22 C -0.16 -2.74 9.62 -39.35 -0.38 -3.12 16 23 H 0.27 7.02 8.29 -40.82 -0.34 6.68 16 24 H 0.40 7.65 8.80 -40.82 -0.36 7.29 16 25 H 0.15 3.51 6.23 -52.48 -0.33 3.18 16 26 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 27 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 28 H 0.14 0.99 8.08 -51.92 -0.42 0.57 16 29 H 0.14 0.90 8.08 -51.93 -0.42 0.48 16 30 H 0.41 1.19 8.83 -34.47 -0.30 0.88 16 31 H 0.42 2.21 8.96 -34.47 -0.31 1.90 16 32 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 299.67 15.07 4.52 4.52 Total: -1.00 -38.27 299.67 -7.83 -46.10 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -2.95 Total: 10.75 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -2.88 Total: -12.02 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 1.17 Total: -44.03 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -2.02 Total: -47.30 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Atomic # 16 Polarization: 28.33 SS G_CDS: -0.64 Total: 27.69 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -38.27 -7.83 -46.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321347021.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.790 kcal (2) G-P(sol) polarization free energy of solvation -38.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds