Wall clock time and date at job start Tue Mar 31 2020 05:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47046 * 202.95152 * 3 2 1 5 5 C 1.37100 * 120.00568 * 263.95446 * 4 3 2 6 6 H 1.07999 * 120.00103 * 200.21583 * 5 4 3 7 7 C 1.38945 * 119.99573 * 20.21350 * 5 4 3 8 8 N 1.31413 * 120.00525 * 21.43964 * 7 5 4 9 9 Si 1.86798 * 120.00016 * 201.43507 * 7 5 4 10 10 H 1.48500 * 109.47247 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47182 * 120.00218 * 9 7 5 12 12 H 1.48500 * 109.47566 * 240.00042 * 9 7 5 13 13 C 1.34784 * 119.99791 * 83.95715 * 4 3 2 14 14 O 1.21284 * 119.99938 * 180.02562 * 13 4 3 15 15 C 1.50699 * 119.99639 * 359.97438 * 13 4 3 16 16 S 1.81004 * 109.46775 * 180.02562 * 15 13 4 17 17 C 1.76199 * 99.99756 * 180.02562 * 16 15 13 18 18 N 1.30304 * 126.17400 * 0.02562 * 17 16 15 19 19 N 1.26094 * 117.60789 * 179.97438 * 18 17 16 20 20 C 1.29326 * 117.97673 * 0.02562 * 19 18 17 21 21 S 1.76489 * 107.87751 * 359.75204 * 20 19 18 22 22 H 1.09005 * 109.47114 * 82.96081 * 3 2 1 23 23 H 1.08997 * 109.47368 * 322.95478 * 3 2 1 24 24 H 0.96998 * 120.00177 * 179.97438 * 8 7 5 25 25 H 1.08994 * 109.47611 * 300.00230 * 15 13 4 26 26 H 1.09001 * 109.46934 * 60.00940 * 15 13 4 27 27 H 1.07999 * 126.06131 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.2728 0.5386 5 6 3.4417 2.2902 -0.3128 6 1 4.0905 3.0830 0.0288 7 6 2.9575 2.3011 -1.6151 8 7 1.8750 1.6210 -1.9195 9 14 3.8451 3.2827 -2.9333 10 1 5.0282 3.9544 -2.3380 11 1 4.2884 2.3689 -4.0167 12 1 2.9249 4.3047 -3.4935 13 6 3.2044 1.4429 1.8712 14 8 3.6077 2.4962 2.3172 15 6 2.8236 0.3248 2.8071 16 16 3.0783 0.8571 4.5182 17 6 2.5707 -0.5991 5.3704 18 7 2.1459 -1.7024 4.8224 19 7 1.8235 -2.6496 5.5897 20 6 1.9354 -2.4626 6.8645 21 16 2.5525 -0.8291 7.1204 22 1 2.9714 -0.1251 -1.0200 23 1 2.9717 -0.8194 0.6191 24 1 1.5368 1.6289 -2.8286 25 1 1.7747 0.0683 2.6590 26 1 3.4436 -0.5479 2.6017 27 1 1.6971 -3.1802 7.6356 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322221809.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:28 Heat of formation + Delta-G solvation = 76.572519 kcal Electronic energy + Delta-G solvation = -16998.110432 eV Core-core repulsion = 14010.918293 eV Total energy + Delta-G solvation = -2987.192140 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 284.014 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.91028 -38.98041 -35.92444 -34.44981 -32.16927 -31.69446 -29.54489 -27.51963 -26.85813 -24.70528 -21.48575 -20.06300 -19.04447 -18.07803 -17.50582 -16.65139 -16.45924 -15.66186 -15.29586 -14.79543 -14.51174 -14.20891 -13.59089 -13.24546 -13.12908 -12.80955 -12.55786 -11.99311 -11.69794 -11.39653 -11.23046 -10.99125 -10.77784 -10.66530 -10.54777 -10.47932 -10.42460 -10.19285 -9.82021 -9.40484 -8.94152 -8.20053 -7.70815 -6.63424 -4.15356 0.20357 0.51614 1.09420 1.48623 2.09359 2.47864 2.99237 3.16547 3.22622 3.36807 3.65381 3.90526 4.02027 4.28794 4.55407 4.76711 4.85478 5.07428 5.25399 5.29074 5.38265 5.64540 5.97277 6.35063 7.35258 7.68008 8.09753 8.43318 8.67144 8.80564 9.00833 9.49391 10.42420 Molecular weight = 284.01amu Principal moments of inertia in cm(-1) A = 0.032968 B = 0.004384 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.110779 B = 6386.025777 C = 7023.710929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.241 3.759 3 C 0.218 3.782 4 N -0.427 5.427 5 C -0.317 4.317 6 H 0.112 0.888 7 C 0.035 3.965 8 N -0.869 5.869 9 Si 0.930 3.070 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.282 1.282 13 C 0.466 3.534 14 O -0.561 6.561 15 C -0.145 4.145 16 S 0.119 5.881 17 C -0.008 4.008 18 N -0.280 5.280 19 N -0.247 5.247 20 C -0.009 4.009 21 S 0.091 5.909 22 H 0.128 0.872 23 H 0.088 0.912 24 H 0.275 0.725 25 H 0.113 0.887 26 H 0.117 0.883 27 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.025 -7.290 12.590 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.077 4.077 3 C 0.091 3.909 4 N -0.147 5.147 5 C -0.444 4.444 6 H 0.130 0.870 7 C -0.170 4.170 8 N -0.507 5.507 9 Si 0.756 3.244 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.207 1.207 13 C 0.252 3.748 14 O -0.444 6.444 15 C -0.298 4.298 16 S 0.350 5.650 17 C -0.394 4.394 18 N -0.122 5.122 19 N -0.081 5.081 20 C -0.315 4.315 21 S 0.327 5.673 22 H 0.146 0.854 23 H 0.106 0.894 24 H 0.086 0.914 25 H 0.131 0.869 26 H 0.135 0.865 27 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.777 -5.918 12.742 14.321 hybrid contribution 0.008 -0.926 -1.256 1.560 sum 2.784 -6.844 11.486 13.657 Atomic orbital electron populations 1.80909 1.13497 1.09217 1.10730 1.29151 0.95263 0.91964 0.91335 1.18775 0.81886 0.86938 1.03312 1.43524 1.55620 1.12110 1.03447 1.19787 1.28198 1.05318 0.91069 0.87035 1.25365 0.94696 0.97830 0.99110 1.69860 1.17764 1.41924 1.21134 0.85801 0.79587 0.79159 0.79843 1.18924 1.20317 1.20750 1.19132 0.85377 0.87556 0.82734 1.90592 1.50698 1.27947 1.75183 1.24014 1.07658 1.03849 0.94299 1.86460 1.76025 1.03600 0.98907 1.32302 1.04337 1.04999 0.97754 1.71784 1.15951 0.96036 1.28458 1.70688 1.14039 1.22336 1.01068 1.31078 1.04653 0.98191 0.97573 1.85725 1.62669 1.13755 1.05115 0.85420 0.89434 0.91385 0.86870 0.86471 0.76731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.01 18.54 42.15 0.78 -10.23 15 2 C 0.24 5.26 12.82 -20.76 -0.27 5.00 15 3 C 0.22 4.18 4.91 -6.83 -0.03 4.14 15 4 N -0.43 -9.54 2.60 -117.93 -0.31 -9.85 15 5 C -0.32 -7.79 9.27 -14.93 -0.14 -7.93 15 6 H 0.11 2.89 7.43 -52.49 -0.39 2.50 15 7 C 0.04 0.83 4.84 -17.47 -0.08 0.75 15 8 N -0.87 -21.29 9.58 55.50 0.53 -20.76 15 9 Si 0.93 18.89 29.60 -169.99 -5.03 13.85 15 10 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 11 H -0.28 -5.49 7.11 56.52 0.40 -5.09 15 12 H -0.28 -5.90 7.11 56.52 0.40 -5.50 15 13 C 0.47 10.07 7.58 -10.98 -0.08 9.99 15 14 O -0.56 -13.83 15.53 5.55 0.09 -13.75 15 15 C -0.14 -2.51 4.31 36.01 0.16 -2.35 15 16 S 0.12 1.89 21.45 -107.50 -2.31 -0.42 15 17 C -0.01 -0.11 7.85 52.11 0.41 0.30 15 18 N -0.28 -4.44 10.95 31.32 0.34 -4.09 15 19 N -0.25 -3.54 11.55 30.51 0.35 -3.19 15 20 C -0.01 -0.09 12.68 51.71 0.66 0.56 15 21 S 0.09 0.96 23.54 -107.50 -2.53 -1.57 15 22 H 0.13 2.46 6.63 -51.93 -0.34 2.11 15 23 H 0.09 1.29 6.69 -51.93 -0.35 0.94 15 24 H 0.28 6.53 8.31 -40.82 -0.34 6.19 15 25 H 0.11 2.01 7.49 -51.92 -0.39 1.62 15 26 H 0.12 1.75 7.42 -51.92 -0.39 1.36 15 27 H 0.22 1.15 8.06 -52.49 -0.42 0.73 15 LS Contribution 280.94 15.07 4.23 4.23 Total: -1.00 -30.78 280.94 -4.64 -35.43 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -1.41 Total: -0.11 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 0.61 Total: 10.45 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 1.70 Total: -48.12 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.09 Total: -13.75 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.85 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -4.84 Total: -1.99 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.78 -4.64 -35.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322221809.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.998 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds