Wall clock time and date at job start Tue Mar 31 2020 05:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31329 * 1 3 3 Si 1.86803 * 119.99881 * 2 1 4 4 H 1.48498 * 109.47306 * 275.13787 * 3 2 1 5 5 H 1.48496 * 109.47178 * 35.13735 * 3 2 1 6 6 H 1.48496 * 109.47058 * 155.13642 * 3 2 1 7 7 C 1.39087 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99695 * 338.50258 * 7 2 1 9 9 N 1.36813 * 120.00229 * 158.50324 * 7 2 1 10 10 C 1.34776 * 119.99608 * 323.64209 * 9 7 2 11 11 O 1.21583 * 120.00038 * 353.87033 * 10 9 7 12 12 C 1.47847 * 119.99582 * 174.15242 * 10 9 7 13 13 N 1.32894 * 119.75804 * 354.15215 * 12 10 9 14 14 C 1.31462 * 121.69268 * 179.97438 * 13 12 10 15 15 C 1.38618 * 120.99323 * 359.97438 * 14 13 12 16 16 C 1.38611 * 119.39892 * 0.02562 * 15 14 13 17 17 Cl 1.73604 * 120.77171 * 180.02562 * 16 15 14 18 18 C 1.39062 * 118.45514 * 359.75413 * 16 15 14 19 19 F 1.35095 * 120.52102 * 180.24305 * 18 16 15 20 20 C 1.46490 * 120.00091 * 143.63655 * 9 7 2 21 21 C 1.53001 * 117.49854 * 2.21689 * 20 9 7 22 22 C 1.52999 * 60.00307 * 252.50754 * 21 20 9 23 23 H 0.97002 * 120.00621 * 359.97438 * 1 2 3 24 24 H 1.07992 * 119.50284 * 180.02562 * 14 13 12 25 25 H 1.08001 * 120.29637 * 179.97438 * 15 14 13 26 26 H 1.08998 * 115.55276 * 147.92066 * 20 9 7 27 27 H 1.08997 * 117.49862 * 0.02562 * 21 20 9 28 28 H 1.09008 * 117.49880 * 145.01834 * 21 20 9 29 29 H 1.09005 * 117.49823 * 252.51455 * 22 21 20 30 30 H 1.08994 * 117.51920 * 107.47862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 2.3862 2.1092 -1.3944 5 1 1.5032 2.6189 0.8058 6 1 3.5948 1.4113 0.5887 7 6 2.0088 -1.2045 -0.0005 8 1 1.5251 -2.1074 0.3418 9 7 3.3055 -1.2455 -0.4347 10 6 3.6963 -0.4685 -1.4643 11 8 2.8752 0.1846 -2.0788 12 6 5.1224 -0.4152 -1.8504 13 7 6.0303 -1.0418 -1.1092 14 6 7.3081 -1.0198 -1.4175 15 6 7.7609 -0.3376 -2.5360 16 6 6.8510 0.3312 -3.3397 17 17 7.3789 1.1962 -4.7493 18 6 5.5047 0.2883 -2.9940 19 9 4.5816 0.9212 -3.7505 20 6 4.2693 -2.1339 0.2195 21 6 3.7524 -3.0285 1.3480 22 6 4.6415 -1.8260 1.6713 23 1 -0.4851 0.8400 0.0004 24 1 8.0155 -1.5418 -0.7903 25 1 8.8133 -0.3267 -2.7784 26 1 5.0499 -2.5373 -0.4255 27 1 2.6952 -2.9563 1.6033 28 1 4.1929 -4.0208 1.4455 29 1 5.6669 -2.0272 1.9814 30 1 4.1696 -0.9623 2.1395 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324263173.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:36 Heat of formation + Delta-G solvation = 17.808205 kcal Electronic energy + Delta-G solvation = -20548.549800 eV Core-core repulsion = 17094.092910 eV Total energy + Delta-G solvation = -3454.456890 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.047 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.60384 -40.29840 -38.63851 -36.84936 -36.36951 -33.10938 -32.40413 -31.47365 -30.81920 -25.95493 -24.14989 -23.28607 -21.93714 -21.36154 -19.97690 -18.12031 -17.40801 -17.10458 -16.47155 -15.84473 -15.68886 -15.19853 -14.44622 -14.22694 -13.95916 -13.51516 -13.32112 -13.21611 -13.07706 -12.63060 -12.61611 -12.23016 -11.77683 -11.22526 -11.18203 -10.81654 -10.41840 -10.20920 -10.02952 -9.87092 -9.57901 -9.20726 -8.94375 -8.63741 -8.56129 -7.64205 -6.44837 -4.03818 0.58838 0.87370 1.72749 3.02856 3.41137 3.42780 3.61594 3.79510 4.08511 4.23407 4.35643 4.46640 4.66410 4.72532 4.74113 5.06610 5.28613 5.41386 5.58448 5.64233 5.73432 5.75241 5.90117 6.24373 6.33755 6.50398 6.81856 6.87465 7.58781 7.66721 7.81154 8.53979 8.72898 9.17244 9.63911 10.56966 Molecular weight = 284.05amu Principal moments of inertia in cm(-1) A = 0.020036 B = 0.007679 C = 0.006041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.136788 B = 3645.564900 C = 4634.155378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.092 3.908 3 Si 0.910 3.090 4 H -0.244 1.244 5 H -0.305 1.305 6 H -0.278 1.278 7 C -0.329 4.329 8 H 0.109 0.891 9 N -0.389 5.389 10 C 0.456 3.544 11 O -0.537 6.537 12 C 0.095 3.905 13 N -0.431 5.431 14 C 0.096 3.904 15 C -0.148 4.148 16 C -0.039 4.039 17 Cl -0.040 7.040 18 C 0.097 3.903 19 F -0.095 7.095 20 C 0.077 3.923 21 C -0.187 4.187 22 C -0.184 4.184 23 H 0.279 0.721 24 H 0.172 0.828 25 H 0.151 0.849 26 H 0.137 0.863 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.635 -2.202 -2.077 16.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.121 4.121 3 Si 0.740 3.260 4 H -0.169 1.169 5 H -0.235 1.235 6 H -0.203 1.203 7 C -0.456 4.456 8 H 0.126 0.874 9 N -0.104 5.104 10 C 0.247 3.753 11 O -0.422 6.422 12 C -0.044 4.044 13 N -0.143 5.143 14 C -0.063 4.063 15 C -0.169 4.169 16 C -0.075 4.075 17 Cl -0.011 7.011 18 C 0.073 3.927 19 F -0.073 7.073 20 C -0.028 4.028 21 C -0.225 4.225 22 C -0.222 4.222 23 H 0.089 0.911 24 H 0.189 0.811 25 H 0.169 0.831 26 H 0.154 0.846 27 H 0.125 0.875 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.697 -2.165 -1.802 15.948 hybrid contribution 0.701 1.440 -0.894 1.835 sum 16.398 -0.725 -2.696 16.634 Atomic orbital electron populations 1.69709 1.07050 1.29117 1.41034 1.25353 0.95008 0.99940 0.91805 0.86388 0.79152 0.81525 0.78933 1.16915 1.23482 1.20322 1.19069 0.85163 0.96944 1.44396 0.87369 1.43127 1.08909 1.33835 1.24580 1.17259 0.85095 0.89143 0.83753 1.90705 1.50898 1.46384 1.54188 1.22043 0.96664 0.94859 0.90859 1.68294 1.01731 1.15994 1.28275 1.22990 0.92585 0.96403 0.94359 1.22058 1.00558 0.98635 0.95659 1.21389 0.92407 1.00495 0.93163 1.98390 1.89996 1.74796 1.37957 1.18402 0.85162 0.96869 0.92313 1.91636 1.64140 1.78366 1.73156 1.22216 0.94700 0.96857 0.89029 1.23249 1.01252 0.94193 1.03806 1.23094 0.99154 0.99910 1.00055 0.91086 0.81050 0.83130 0.84566 0.87528 0.89411 0.89441 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.70 13.95 55.50 0.77 -23.93 16 2 C 0.09 2.66 4.81 -17.45 -0.08 2.57 16 3 Si 0.91 24.45 24.62 -169.99 -4.19 20.26 16 4 H -0.24 -6.94 6.20 56.52 0.35 -6.59 16 5 H -0.31 -7.92 7.11 56.52 0.40 -7.52 16 6 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.33 -9.05 8.86 -15.01 -0.13 -9.19 16 8 H 0.11 3.02 6.78 -52.49 -0.36 2.66 16 9 N -0.39 -9.57 2.60 -108.80 -0.28 -9.86 16 10 C 0.46 11.55 5.62 -12.33 -0.07 11.48 16 11 O -0.54 -15.49 10.57 5.29 0.06 -15.43 16 12 C 0.10 1.96 6.63 -82.97 -0.55 1.41 16 13 N -0.43 -7.23 6.20 -9.79 -0.06 -7.29 16 14 C 0.10 1.15 11.18 -17.57 -0.20 0.95 16 15 C -0.15 -1.67 9.93 -39.30 -0.39 -2.06 16 16 C -0.04 -0.58 6.37 -39.14 -0.25 -0.83 16 17 Cl -0.04 -0.53 28.75 -51.86 -1.49 -2.02 16 18 C 0.10 1.86 7.29 -38.77 -0.28 1.58 16 19 F -0.10 -2.06 15.22 2.25 0.03 -2.03 16 20 C 0.08 1.51 4.82 -67.93 -0.33 1.18 16 21 C -0.19 -3.23 9.79 -26.73 -0.26 -3.49 16 22 C -0.18 -3.18 10.37 -26.73 -0.28 -3.46 16 23 H 0.28 7.74 8.31 -40.82 -0.34 7.40 16 24 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 25 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 26 H 0.14 2.41 5.84 -51.93 -0.30 2.11 16 27 H 0.11 2.05 6.41 -51.93 -0.33 1.72 16 28 H 0.09 1.23 8.14 -51.92 -0.42 0.81 16 29 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 LS Contribution 275.89 15.07 4.16 4.16 Total: -1.00 -32.44 275.89 -6.11 -38.56 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: -2.29 Total: -2.57 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -2.82 Total: 0.14 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.43 Total: -41.07 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.06 Total: -15.43 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.03 Total: -2.03 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -4.19 Total: 20.26 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.49 Total: -2.02 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.44 -6.11 -38.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324263173.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.363 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds