Wall clock time and date at job start Tue Mar 31 2020 05:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86805 * 120.00014 * 2 1 4 4 H 1.48496 * 109.47160 * 270.00499 * 3 2 1 5 5 H 1.48503 * 109.47061 * 30.00521 * 3 2 1 6 6 H 1.48500 * 109.46598 * 150.00167 * 3 2 1 7 7 C 1.37873 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00172 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99873 * 179.97438 * 10 9 7 12 12 O 1.21695 * 119.99811 * 0.02562 * 11 10 9 13 13 C 1.46676 * 119.99963 * 180.02562 * 11 10 9 14 14 C 1.35661 * 126.13287 * 359.69444 * 13 11 10 15 15 N 1.30945 * 114.19286 * 179.78176 * 14 13 11 16 16 C 1.29426 * 117.36339 * 0.52845 * 15 14 13 17 17 C 1.50703 * 124.80401 * 179.68620 * 16 15 14 18 18 O 1.43753 * 109.63120 * 149.39029 * 17 16 15 19 19 C 1.44788 * 104.81297 * 215.80816 * 18 17 16 20 20 C 1.54910 * 101.72222 * 36.09946 * 19 18 17 21 21 O 1.43355 * 109.63316 * 30.02124 * 17 16 15 22 22 S 1.70957 * 110.39172 * 359.70440 * 16 15 14 23 23 H 0.97001 * 119.99269 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 25 25 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 26 26 H 0.96999 * 120.00080 * 0.02562 * 10 9 7 27 27 H 1.08007 * 122.90055 * 359.96547 * 14 13 11 28 28 H 1.09003 * 109.62505 * 269.62615 * 17 16 15 29 29 H 1.09008 * 110.97277 * 277.99163 * 19 18 17 30 30 H 1.08994 * 110.97412 * 154.21123 * 19 18 17 31 31 H 1.08996 * 110.69522 * 206.04609 * 20 19 18 32 32 H 1.09005 * 110.84230 * 82.90628 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3249 -2.8217 -0.0020 12 8 6.1157 -1.8967 -0.0025 13 6 5.8137 -4.2046 -0.0024 14 6 5.0473 -5.3240 0.0039 15 7 5.7297 -6.4415 -0.0027 16 6 7.0208 -6.3503 -0.0035 17 6 7.9660 -7.5240 -0.0039 18 8 9.1761 -7.1693 -0.6941 19 6 9.5776 -8.3782 -1.3823 20 6 8.2087 -8.9777 -1.7902 21 8 7.3573 -8.6325 -0.6788 22 16 7.5019 -4.7098 -0.0037 23 1 -0.4849 0.8401 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8745 -0.6801 -0.8912 26 1 3.3694 -3.3126 -0.0010 27 1 3.9677 -5.2957 0.0106 28 1 8.2016 -7.8047 1.0227 29 1 10.1133 -9.0497 -0.7111 30 1 10.1792 -8.1455 -2.2609 31 1 8.2793 -10.0598 -1.8998 32 1 7.8443 -8.5215 -2.7107 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324977098.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:03 Heat of formation + Delta-G solvation = -68.700402 kcal Electronic energy + Delta-G solvation = -19145.878860 eV Core-core repulsion = 15813.174686 eV Total energy + Delta-G solvation = -3332.704174 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.92764 -39.82368 -38.56372 -35.52879 -34.44406 -32.56864 -31.89088 -30.06239 -27.98241 -26.78344 -23.96301 -23.81273 -22.56221 -21.14694 -19.49488 -18.77996 -17.85066 -17.35580 -16.95055 -16.38812 -15.98534 -15.31937 -15.08897 -14.90035 -14.46098 -14.24939 -13.99427 -13.89594 -13.59651 -13.21449 -13.07387 -12.40948 -12.28111 -12.05054 -11.55063 -11.06157 -10.81900 -10.81103 -10.57704 -10.05487 -9.92603 -9.55398 -9.46571 -9.38667 -9.05334 -8.82566 -8.28033 -6.24811 -4.28047 0.19382 1.05353 1.64985 2.45834 2.80601 3.24652 3.31622 3.37089 3.39264 3.52629 3.88314 4.04227 4.13575 4.30318 4.42383 4.53379 4.72304 4.89692 4.95612 5.07954 5.10274 5.19431 5.34845 5.37746 5.91711 6.46203 6.70890 6.98733 7.04588 7.29466 7.53477 8.01108 8.38582 8.63251 8.76656 9.33955 10.86952 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.045325 B = 0.003290 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.619021 B = 8507.975159 C = 8945.590632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.221 3.779 10 N -0.687 5.687 11 C 0.577 3.423 12 O -0.550 6.550 13 C -0.276 4.276 14 C 0.080 3.920 15 N -0.444 5.444 16 C -0.014 4.014 17 C 0.319 3.681 18 O -0.372 6.372 19 C 0.019 3.981 20 C 0.016 3.984 21 O -0.355 6.355 22 S 0.269 5.731 23 H 0.268 0.732 24 H 0.030 0.970 25 H 0.025 0.975 26 H 0.398 0.602 27 H 0.187 0.813 28 H 0.118 0.882 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.754 -18.383 -1.916 26.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.099 3.901 10 N -0.335 5.335 11 C 0.360 3.640 12 O -0.430 6.430 13 C -0.401 4.401 14 C -0.079 4.079 15 N -0.159 5.159 16 C -0.288 4.288 17 C 0.220 3.780 18 O -0.292 6.292 19 C -0.057 4.057 20 C -0.060 4.060 21 O -0.275 6.275 22 S 0.526 5.474 23 H 0.078 0.922 24 H 0.048 0.952 25 H 0.043 0.957 26 H 0.233 0.767 27 H 0.204 0.796 28 H 0.135 0.865 29 H 0.102 0.898 30 H 0.133 0.867 31 H 0.124 0.876 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 19.830 -17.507 -1.857 26.517 hybrid contribution -1.050 0.455 -0.119 1.151 sum 18.780 -17.052 -1.976 25.444 Atomic orbital electron populations 1.69880 1.06208 1.27515 1.49101 1.24781 0.94800 0.99160 0.93764 0.86822 0.80594 0.83213 0.79118 1.19771 1.20814 1.18444 1.21053 0.88252 0.95388 1.53734 0.90085 1.19608 0.95479 0.77782 0.97209 1.46021 1.04691 1.11619 1.71162 1.16771 0.83692 0.85381 0.78182 1.90806 1.55442 1.44918 1.51862 1.26298 0.97933 1.00113 1.15733 1.22277 1.01806 0.84659 0.99141 1.65952 1.04659 1.31076 1.14242 1.27507 0.94971 0.99518 1.06852 1.22085 0.79108 0.81255 0.95602 1.89264 1.38967 1.34075 1.66907 1.24503 0.97382 0.85904 0.97945 1.24316 0.88574 1.02172 0.90956 1.89061 1.47795 1.47819 1.42791 1.84087 1.03666 0.97398 1.62222 0.92166 0.95216 0.95685 0.76709 0.79627 0.86535 0.89818 0.86685 0.87557 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.96 55.43 0.77 -25.47 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.55 -14.83 9.83 -34.44 -0.34 -15.17 16 8 H 0.08 2.28 7.84 -52.48 -0.41 1.87 16 9 C 0.22 5.39 4.50 -5.19 -0.02 5.37 16 10 N -0.69 -14.09 5.53 -62.79 -0.35 -14.44 16 11 C 0.58 11.55 7.79 -12.85 -0.10 11.45 16 12 O -0.55 -12.75 16.97 5.19 0.09 -12.66 16 13 C -0.28 -4.52 6.48 -37.10 -0.24 -4.76 16 14 C 0.08 1.17 10.93 -18.85 -0.21 0.97 16 15 N -0.44 -6.60 10.33 -11.50 -0.12 -6.72 16 16 C -0.01 -0.18 6.96 -13.29 -0.09 -0.27 16 17 C 0.32 3.33 4.55 36.01 0.16 3.49 16 18 O -0.37 -3.49 10.94 -59.04 -0.65 -4.14 16 19 C 0.02 0.10 7.95 38.17 0.30 0.40 16 20 C 0.02 0.11 8.07 38.17 0.31 0.42 16 21 O -0.35 -3.83 11.07 -59.04 -0.65 -4.49 16 22 S 0.27 3.76 22.58 -107.50 -2.43 1.33 16 23 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 25 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 26 H 0.40 7.14 7.03 -40.82 -0.29 6.85 16 27 H 0.19 2.34 7.15 -52.48 -0.38 1.97 16 28 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 30 H 0.12 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 297.93 15.07 4.49 4.49 Total: -1.00 -33.98 297.93 -6.95 -40.94 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -3.12 Total: 0.60 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -0.32 Total: 4.02 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.31 Total: -46.63 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -1.21 Total: -21.28 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -2.43 Total: 1.33 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.98 -6.95 -40.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324977098.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.764 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds