Wall clock time and date at job start Tue Mar 31 2020 06:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36900 * 119.99935 * 2 1 4 4 H 1.07994 * 119.99762 * 182.31141 * 3 2 1 5 5 C 1.39006 * 119.99986 * 2.30982 * 3 2 1 6 6 N 1.31399 * 119.99696 * 6.85872 * 5 3 2 7 7 Si 1.86796 * 119.99974 * 186.86206 * 5 3 2 8 8 H 1.48501 * 109.46943 * 60.00140 * 7 5 3 9 9 H 1.48496 * 109.47237 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47071 * 300.00070 * 7 5 3 11 11 C 1.34773 * 120.00432 * 179.97438 * 2 1 3 12 12 O 1.21720 * 120.00470 * 185.44428 * 11 2 1 13 13 C 1.46568 * 119.99520 * 5.45100 * 11 2 1 14 14 C 1.36777 * 126.17437 * 213.07225 * 13 11 2 15 15 N 1.30951 * 113.91709 * 180.22851 * 14 13 11 16 16 C 1.29379 * 117.46720 * 359.49009 * 15 14 13 17 17 C 1.50692 * 124.70225 * 180.23081 * 16 15 14 18 18 O 1.43750 * 109.63214 * 149.66661 * 17 16 15 19 19 C 1.44791 * 104.81317 * 215.80810 * 18 17 16 20 20 C 1.54913 * 101.72331 * 36.10228 * 19 18 17 21 21 O 1.43372 * 109.63529 * 30.29686 * 17 16 15 22 22 S 1.70920 * 110.59360 * 0.49341 * 16 15 14 23 23 H 1.09001 * 109.47077 * 186.12370 * 1 2 3 24 24 H 1.09006 * 109.46749 * 306.12016 * 1 2 3 25 25 H 1.08994 * 109.47101 * 66.12226 * 1 2 3 26 26 H 0.97007 * 119.99709 * 179.97438 * 6 5 3 27 27 H 1.07997 * 123.04236 * 359.96621 * 14 13 11 28 28 H 1.09004 * 109.63236 * 269.90439 * 17 16 15 29 29 H 1.09001 * 110.97469 * 277.98942 * 19 18 17 30 30 H 1.09005 * 110.97562 * 154.20798 * 19 18 17 31 31 H 1.08996 * 110.69663 * 206.04438 * 20 19 18 32 32 H 1.09000 * 110.84516 * 82.90376 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1856 0.0000 4 1 3.2288 1.1859 -0.0377 5 6 1.4553 2.3889 0.0485 6 7 0.1539 2.3897 0.2300 7 14 2.3725 4.0047 -0.1444 8 1 3.0502 4.0345 -1.4654 9 1 1.4112 5.1332 -0.0562 10 1 3.3850 4.1310 0.9344 11 6 2.1390 -1.1671 0.0005 12 8 3.3520 -1.1695 0.1005 13 6 1.4111 -2.4336 -0.1195 14 6 1.7600 -3.6232 0.4583 15 7 0.9383 -4.6062 0.1876 16 6 -0.0815 -4.3418 -0.5634 17 6 -1.1290 -5.3450 -0.9722 18 8 -2.3902 -4.6796 -1.1540 19 6 -3.3799 -5.6286 -0.6890 20 6 -2.6436 -6.2937 0.5007 21 8 -1.2733 -6.3360 0.0538 22 16 -0.0721 -2.6985 -1.0333 23 1 -0.3633 -1.0218 0.1096 24 1 -0.3633 0.6058 0.8302 25 1 -0.3633 0.4160 -0.9397 26 1 -0.3305 3.2295 0.2642 27 1 2.6364 -3.7421 1.0782 28 1 -0.8326 -5.8244 -1.9052 29 1 -3.6123 -6.3605 -1.4625 30 1 -4.2825 -5.1180 -0.3530 31 1 -3.0233 -7.3005 0.6745 32 1 -2.7363 -5.6876 1.4020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327205852.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:36 Heat of formation + Delta-G solvation = -43.963599 kcal Electronic energy + Delta-G solvation = -19967.480577 eV Core-core repulsion = 16635.849072 eV Total energy + Delta-G solvation = -3331.631505 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.58004 -39.19492 -38.07730 -35.22551 -34.87672 -31.97370 -31.36649 -29.35476 -27.01821 -26.33324 -24.55728 -23.60086 -23.21838 -20.96726 -18.72985 -18.13796 -17.49892 -17.10966 -16.73507 -15.92821 -15.69043 -15.21793 -14.67774 -14.49340 -14.18858 -13.96132 -13.69516 -13.43822 -13.24652 -12.92193 -12.61064 -11.99308 -11.78141 -11.74707 -11.16363 -11.10600 -10.92775 -10.55331 -10.52996 -10.44415 -10.19675 -9.35699 -9.20306 -8.72871 -8.55648 -8.38289 -8.09524 -6.44470 -3.97965 0.76718 1.63306 2.13646 2.98529 3.11223 3.13338 3.17170 3.19665 3.72905 3.92707 4.05138 4.30506 4.48940 4.67275 4.74890 4.84131 5.01534 5.07081 5.18520 5.36057 5.47584 5.62684 5.68948 5.93069 6.19048 6.56950 6.79698 6.82931 7.21401 7.39435 7.81005 8.12003 8.26463 8.94362 9.16105 9.75298 10.41819 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.032909 B = 0.004471 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.630918 B = 6260.678728 C = 6877.004951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.422 5.422 3 C -0.286 4.286 4 H 0.112 0.888 5 C 0.026 3.974 6 N -0.871 5.871 7 Si 0.942 3.058 8 H -0.270 1.270 9 H -0.281 1.281 10 H -0.269 1.269 11 C 0.488 3.512 12 O -0.585 6.585 13 C -0.226 4.226 14 C 0.059 3.941 15 N -0.441 5.441 16 C -0.048 4.048 17 C 0.323 3.677 18 O -0.371 6.371 19 C 0.018 3.982 20 C 0.017 3.983 21 O -0.358 6.358 22 S 0.218 5.782 23 H 0.032 0.968 24 H 0.109 0.891 25 H 0.059 0.941 26 H 0.272 0.728 27 H 0.181 0.819 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.693 -11.604 -2.324 15.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.137 5.137 3 C -0.415 4.415 4 H 0.130 0.870 5 C -0.178 4.178 6 N -0.511 5.511 7 Si 0.767 3.233 8 H -0.195 1.195 9 H -0.206 1.206 10 H -0.194 1.194 11 C 0.276 3.724 12 O -0.473 6.473 13 C -0.351 4.351 14 C -0.098 4.098 15 N -0.156 5.156 16 C -0.323 4.323 17 C 0.224 3.776 18 O -0.291 6.291 19 C -0.058 4.058 20 C -0.060 4.060 21 O -0.278 6.278 22 S 0.474 5.526 23 H 0.049 0.951 24 H 0.127 0.873 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.198 0.802 28 H 0.127 0.873 29 H 0.099 0.901 30 H 0.131 0.869 31 H 0.121 0.879 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.815 -11.309 -2.741 15.886 hybrid contribution 0.794 0.615 0.525 1.133 sum -10.022 -10.694 -2.216 14.822 Atomic orbital electron populations 1.22456 0.80051 0.97642 1.05503 1.43762 1.06401 1.04829 1.58718 1.19984 0.93735 0.81525 1.46264 0.86997 1.25493 0.95915 1.00306 0.96037 1.70068 1.06839 1.27865 1.46291 0.85736 0.78784 0.79282 0.79491 1.19507 1.20579 1.19439 1.16389 0.86859 0.81297 0.87859 1.90666 1.12653 1.85727 1.58215 1.26617 1.00429 1.01336 1.06737 1.22181 1.00139 0.85692 1.01796 1.65865 1.02496 1.34099 1.13178 1.27242 1.00245 0.99240 1.05526 1.21987 0.82724 0.81944 0.90927 1.89275 1.14912 1.40025 1.84868 1.24461 0.93420 0.92355 0.95563 1.24268 0.81274 1.02628 0.97791 1.89041 1.27873 1.55658 1.55235 1.84216 1.20001 1.02387 1.46045 0.95076 0.87318 0.92241 0.91649 0.80198 0.87274 0.90132 0.86888 0.87920 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.02 8.10 59.85 0.48 2.50 16 2 N -0.42 -10.98 3.02 -123.73 -0.37 -11.35 16 3 C -0.29 -7.78 9.56 -15.00 -0.14 -7.93 16 4 H 0.11 3.15 7.18 -52.49 -0.38 2.78 16 5 C 0.03 0.66 5.43 -17.45 -0.09 0.57 16 6 N -0.87 -21.76 9.51 55.50 0.53 -21.23 16 7 Si 0.94 19.80 29.56 -169.99 -5.02 14.77 16 8 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 9 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 10 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 11 C 0.49 12.60 7.52 -12.90 -0.10 12.51 16 12 O -0.59 -16.83 16.62 5.17 0.09 -16.74 16 13 C -0.23 -4.92 5.69 -36.75 -0.21 -5.13 16 14 C 0.06 1.20 11.31 -18.46 -0.21 0.99 16 15 N -0.44 -8.52 10.31 -11.25 -0.12 -8.64 16 16 C -0.05 -0.84 6.95 -13.32 -0.09 -0.93 16 17 C 0.32 4.50 4.55 36.00 0.16 4.66 16 18 O -0.37 -4.68 10.93 -59.04 -0.65 -5.32 16 19 C 0.02 0.15 7.95 38.17 0.30 0.45 16 20 C 0.02 0.16 8.07 38.17 0.31 0.47 16 21 O -0.36 -4.95 11.07 -59.04 -0.65 -5.61 16 22 S 0.22 3.94 19.13 -107.50 -2.06 1.88 16 23 H 0.03 0.65 3.92 -26.89 -0.11 0.55 16 24 H 0.11 2.64 6.21 -51.93 -0.32 2.32 16 25 H 0.06 1.37 7.75 -51.93 -0.40 0.97 16 26 H 0.27 6.39 8.31 -40.82 -0.34 6.06 16 27 H 0.18 3.46 8.06 -52.49 -0.42 3.04 16 28 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 288.76 15.07 4.35 4.35 Total: -1.00 -31.80 288.76 -6.37 -38.16 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -2.88 Total: 1.58 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 0.41 Total: 8.15 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.04 Total: -41.23 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -1.21 Total: -27.68 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -2.06 Total: 1.88 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.80 -6.37 -38.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327205852.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.799 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds