Wall clock time and date at job start Tue Mar 31 2020 05:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 120.00019 * 2 1 4 4 H 1.48507 * 109.47040 * 269.99607 * 3 2 1 5 5 H 1.48495 * 109.47266 * 29.99736 * 3 2 1 6 6 H 1.48505 * 109.47294 * 149.99906 * 3 2 1 7 7 C 1.38798 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00073 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00099 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00185 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47245 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00087 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00245 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00006 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.47106 * 179.97438 * 14 13 11 16 16 C 1.35126 * 125.61289 * 89.99736 * 15 14 13 17 17 C 1.40362 * 107.11590 * 180.02562 * 16 15 14 18 18 C 1.36545 * 106.70765 * 0.02562 * 17 16 15 19 19 C 1.46656 * 125.99019 * 179.97438 * 18 17 16 20 20 N 1.34778 * 120.00077 * 179.97438 * 19 18 17 21 21 O 1.21690 * 119.99858 * 0.02562 * 19 18 17 22 22 O 1.33928 * 125.61438 * 269.69740 * 15 14 13 23 23 H 0.97001 * 119.99673 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46837 * 59.99618 * 10 9 7 25 25 H 1.09001 * 109.46460 * 300.00025 * 10 9 7 26 26 H 0.96998 * 119.99803 * 359.97438 * 13 11 10 27 27 H 1.09001 * 109.47001 * 59.99676 * 14 13 11 28 28 H 1.09000 * 109.47574 * 299.99892 * 14 13 11 29 29 H 1.08002 * 126.44381 * 359.96955 * 16 15 14 30 30 H 1.08002 * 126.64769 * 180.02562 * 17 16 15 31 31 H 0.96998 * 119.99988 * 359.97438 * 20 19 18 32 32 H 0.96994 * 120.00139 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0021 11 6 1.9873 -5.3027 0.0017 12 8 0.7909 -5.5023 0.0009 13 7 2.8439 -6.3432 0.0033 14 6 2.3301 -7.7151 0.0034 15 6 3.4846 -8.6839 0.0046 16 6 4.0865 -9.1892 1.1038 17 6 5.1069 -10.0446 0.6596 18 6 5.0758 -10.0171 -0.7053 19 6 5.9652 -10.7615 -1.6028 20 7 5.8265 -10.6446 -2.9383 21 8 6.8278 -11.4855 -1.1417 22 8 4.0791 -9.1900 -1.0835 23 1 -0.4850 0.8401 -0.0004 24 1 3.1236 -3.7310 0.8925 25 1 3.1250 -3.7318 -0.8875 26 1 3.8007 -6.1836 0.0043 27 1 1.7225 -7.8756 -0.8871 28 1 1.7205 -7.8747 0.8928 29 1 3.8313 -8.9745 2.1310 30 1 5.7852 -10.6142 1.2775 31 1 5.1383 -10.0684 -3.3059 32 1 6.4145 -11.1372 -3.5319 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340060770.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:23 Heat of formation + Delta-G solvation = -62.872507 kcal Electronic energy + Delta-G solvation = -18504.517046 eV Core-core repulsion = 15172.065589 eV Total energy + Delta-G solvation = -3332.451457 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.16342 -39.63594 -39.22941 -35.08013 -34.27903 -33.39090 -32.46445 -31.22055 -29.23925 -26.47295 -25.47248 -23.11734 -22.04376 -20.67233 -20.56873 -18.87749 -17.99547 -17.39262 -16.96388 -16.67902 -16.10592 -15.46669 -15.19402 -14.83568 -14.78990 -14.56125 -13.96734 -13.65337 -13.51961 -13.40066 -13.18835 -12.65678 -12.48784 -11.86323 -11.09256 -11.05967 -10.93814 -10.80058 -10.47219 -10.27957 -9.86483 -9.70083 -9.15829 -9.08295 -8.99592 -8.29310 -6.54841 -6.25305 -3.96431 0.52953 1.81492 2.11825 2.73301 2.94540 2.97330 3.06735 3.20275 3.26280 3.30512 3.67053 4.08573 4.16910 4.48902 4.51764 4.96202 5.04859 5.10203 5.19682 5.27612 5.43586 5.48056 5.62498 5.81544 5.92290 6.07453 6.15320 6.32924 6.40542 6.81796 7.49557 7.56515 7.63124 8.31711 8.43180 9.20237 10.82120 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.033145 B = 0.002684 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.579492 B =10430.597810 C =10797.794699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.536 3.464 12 O -0.513 6.513 13 N -0.738 5.738 14 C 0.199 3.801 15 C 0.010 3.990 16 C -0.197 4.197 17 C -0.113 4.113 18 C -0.083 4.083 19 C 0.612 3.388 20 N -0.843 5.843 21 O -0.524 6.524 22 O -0.157 6.157 23 H 0.269 0.731 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.402 0.598 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.163 0.837 30 H 0.163 0.837 31 H 0.409 0.591 32 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.557 -19.614 -2.409 22.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.322 3.678 12 O -0.387 6.387 13 N -0.394 5.394 14 C 0.075 3.925 15 C -0.042 4.042 16 C -0.217 4.217 17 C -0.134 4.134 18 C -0.136 4.136 19 C 0.396 3.604 20 N -0.406 5.406 21 O -0.401 6.401 22 O -0.053 6.053 23 H 0.079 0.921 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.236 0.764 27 H 0.106 0.894 28 H 0.122 0.878 29 H 0.180 0.820 30 H 0.181 0.819 31 H 0.238 0.762 32 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 8.785 -20.197 -2.270 22.141 hybrid contribution 2.389 1.362 -0.289 2.765 sum 11.173 -18.835 -2.558 22.049 Atomic orbital electron populations 1.70014 1.05960 1.27520 1.46770 1.24996 0.95040 0.99065 0.94480 0.86158 0.79413 0.81504 0.78367 1.20260 1.20733 1.19674 1.22861 0.94919 0.91574 1.59085 0.90874 1.85402 1.04714 0.96363 1.96747 1.23533 1.06766 0.94899 1.05174 1.20362 0.86388 0.86134 0.74896 1.90725 1.15233 1.85459 1.47260 1.46074 1.10486 1.04346 1.78538 1.19671 0.89504 0.78279 1.05023 1.22806 0.97934 0.99401 0.84108 1.21761 0.98479 1.01208 1.00240 1.22024 0.99127 0.99340 0.92910 1.21980 0.95278 1.01588 0.94726 1.16503 0.81836 0.80059 0.81955 1.43706 1.39537 1.50696 1.06645 1.90939 1.34066 1.38938 1.76203 1.84018 1.38146 1.48083 1.35005 0.92138 0.88974 0.89038 0.76350 0.89356 0.87751 0.81968 0.81893 0.76192 0.75857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.06 29.55 -169.99 -5.02 16.04 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -14.95 9.50 30.94 0.29 -14.66 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 10 C -0.15 -2.93 6.16 36.00 0.22 -2.70 16 11 C 0.54 9.23 7.85 -10.99 -0.09 9.14 16 12 O -0.51 -10.83 15.86 5.55 0.09 -10.74 16 13 N -0.74 -8.88 5.55 -61.47 -0.34 -9.22 16 14 C 0.20 2.02 6.20 -5.19 -0.03 1.99 16 15 C 0.01 0.09 6.68 -35.41 -0.24 -0.14 16 16 C -0.20 -1.65 10.77 -39.89 -0.43 -2.08 16 17 C -0.11 -1.03 10.62 -39.39 -0.42 -1.44 16 18 C -0.08 -0.80 7.13 -36.80 -0.26 -1.06 16 19 C 0.61 5.85 8.06 -12.86 -0.10 5.74 16 20 N -0.84 -4.87 8.87 30.26 0.27 -4.61 16 21 O -0.52 -6.67 17.70 5.20 0.09 -6.58 16 22 O -0.16 -1.48 10.40 4.97 0.05 -1.43 16 23 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 25 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 26 H 0.40 3.95 8.46 -40.82 -0.35 3.60 16 27 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.16 1.07 8.06 -52.49 -0.42 0.64 16 30 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.41 1.71 8.59 -40.82 -0.35 1.36 16 32 H 0.41 1.65 8.93 -40.82 -0.36 1.28 16 LS Contribution 312.28 15.07 4.71 4.71 Total: -1.00 -35.55 312.28 -5.93 -41.47 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -3.14 Total: 2.38 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -1.15 Total: -3.25 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.66 Total: -38.85 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.23 Total: -18.74 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.55 -5.93 -41.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340060770.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.399 kcal (2) G-P(sol) polarization free energy of solvation -35.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds