Wall clock time and date at job start Tue Mar 31 2020 06:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45198 * 109.46581 * 2 1 4 4 C 1.34770 * 116.99534 * 179.97438 * 3 2 1 5 5 O 1.21468 * 119.99961 * 0.02562 * 4 3 2 6 6 C 1.47607 * 119.99721 * 180.02562 * 4 3 2 7 7 N 1.30307 * 124.74204 * 359.97438 * 6 4 3 8 8 C 1.30304 * 117.40543 * 180.02562 * 7 6 4 9 9 C 1.37207 * 114.01001 * 359.97438 * 8 7 6 10 10 C 1.47166 * 126.15833 * 179.97438 * 9 8 7 11 11 O 1.21623 * 119.99701 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00223 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99873 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.46928 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99963 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99865 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00518 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99987 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46922 * 90.00621 * 18 16 14 20 20 H 1.48500 * 109.47411 * 210.00442 * 18 16 14 21 21 H 1.48494 * 109.47378 * 330.00637 * 18 16 14 22 22 S 1.70928 * 124.73908 * 180.26580 * 6 4 3 23 23 H 1.08996 * 109.47275 * 299.99552 * 1 2 3 24 24 H 1.09001 * 109.46869 * 60.00410 * 1 2 3 25 25 H 1.09002 * 109.46911 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46875 * 240.00091 * 2 1 3 27 27 H 1.08993 * 109.47022 * 119.99874 * 2 1 3 28 28 H 1.07995 * 122.99629 * 180.02562 * 8 7 6 29 29 H 0.96999 * 120.00047 * 359.97438 * 12 10 9 30 30 H 1.09004 * 109.47073 * 299.99562 * 13 12 10 31 31 H 1.09000 * 109.47212 * 59.99645 * 13 12 10 32 32 H 0.96992 * 120.00316 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3500 1.5456 0.0005 5 8 4.0899 0.5823 0.0005 6 6 3.9141 2.9096 0.0011 7 7 3.2084 4.0050 0.0007 8 6 3.8560 5.1357 0.0009 9 6 5.2211 4.9972 0.0020 10 6 6.2049 6.0917 0.0019 11 8 5.8281 7.2481 0.0011 12 7 7.5235 5.8126 0.0025 13 6 8.5028 6.9022 0.0030 14 6 9.8953 6.3260 0.0043 15 1 10.0367 5.2553 0.0044 16 6 10.9888 7.1657 0.0044 17 7 10.8168 8.4696 0.0038 18 14 12.7149 6.4515 0.0068 19 1 13.1736 6.2609 -1.3926 20 1 13.6353 7.3833 0.7068 21 1 12.7081 5.1426 0.7082 22 16 5.5843 3.2729 -0.0047 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.3624 6.0963 0.0009 29 1 7.8240 4.8904 0.0035 30 1 8.3641 7.5159 -0.8872 31 1 8.3631 7.5160 0.8928 32 1 11.5861 9.0603 0.0043 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346623120.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:48 Heat of formation + Delta-G solvation = -78.170663 kcal Electronic energy + Delta-G solvation = -18696.240646 eV Core-core repulsion = 15363.125811 eV Total energy + Delta-G solvation = -3333.114835 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.85165 -39.88721 -38.61549 -36.99132 -34.45217 -32.54457 -32.21904 -30.87558 -28.06996 -26.70901 -23.99609 -23.26735 -22.34341 -21.18175 -20.13759 -18.90722 -17.80194 -17.02065 -16.89373 -16.63421 -15.75560 -15.27315 -15.22102 -14.76369 -14.56028 -14.16641 -13.83966 -13.79484 -13.22606 -13.10278 -12.34145 -12.12553 -12.01495 -11.99500 -11.78352 -11.28173 -11.06727 -10.96324 -10.91055 -10.42289 -10.26176 -9.74330 -9.58922 -9.50556 -9.33960 -8.87194 -8.13774 -6.25687 -4.33738 -0.38512 0.64440 1.28211 1.69302 2.32161 2.64499 3.19986 3.26377 3.28489 3.44403 3.62771 3.82231 4.27881 4.54403 4.55606 4.61707 4.88204 4.97612 5.10995 5.21598 5.26454 5.40539 5.58587 5.85104 5.94188 7.03124 7.08477 7.12048 7.34921 7.39370 7.50691 7.83160 8.31396 8.53999 8.78287 9.32873 10.84317 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.034905 B = 0.003169 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.975842 B = 8833.439968 C = 9609.663424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.329 6.329 4 C 0.556 3.444 5 O -0.493 6.493 6 C -0.041 4.041 7 N -0.414 5.414 8 C 0.096 3.904 9 C -0.254 4.254 10 C 0.573 3.427 11 O -0.527 6.527 12 N -0.698 5.698 13 C 0.248 3.752 14 C -0.548 4.548 15 H 0.065 0.935 16 C 0.066 3.934 17 N -0.883 5.883 18 Si 0.905 3.095 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 S 0.311 5.689 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.200 0.800 29 H 0.389 0.611 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.186 -15.732 -0.016 22.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.244 6.244 4 C 0.396 3.604 5 O -0.380 6.380 6 C -0.310 4.310 7 N -0.132 5.132 8 C -0.065 4.065 9 C -0.380 4.380 10 C 0.355 3.645 11 O -0.406 6.406 12 N -0.346 5.346 13 C 0.128 3.872 14 C -0.586 4.586 15 H 0.083 0.917 16 C -0.139 4.139 17 N -0.520 5.520 18 Si 0.732 3.268 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.196 1.196 22 S 0.567 5.433 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.100 0.900 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.216 0.784 29 H 0.223 0.777 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.769 -15.813 -0.020 22.332 hybrid contribution 0.612 -0.021 -0.002 0.613 sum -15.157 -15.834 -0.022 21.919 Atomic orbital electron populations 1.21813 0.92145 1.03077 1.03925 1.23196 0.95764 0.79439 1.02994 1.86677 1.21998 1.32568 1.83178 1.19511 0.81526 0.86433 0.72931 1.90918 1.60602 1.40587 1.45849 1.25588 0.96133 0.95421 1.13900 1.66235 1.38651 0.96998 1.11349 1.22511 0.88536 0.97191 0.98223 1.27477 1.00049 0.98002 1.12484 1.16830 0.82219 0.86511 0.78953 1.90818 1.79527 1.19303 1.50986 1.46521 1.04995 1.12076 1.71017 1.19285 0.84881 0.84602 0.98387 1.21173 0.90048 0.93489 1.53933 0.91733 1.24939 0.99729 0.94733 0.94452 1.69959 1.31348 1.02320 1.48404 0.86383 0.83118 0.78939 0.78328 1.20359 1.20919 1.19642 1.84082 1.02771 0.97209 1.59250 0.91228 0.91235 0.89983 0.90777 0.90776 0.78353 0.77741 0.94794 0.94789 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.29 37.16 0.38 -0.48 16 2 C 0.06 0.48 6.20 37.16 0.23 0.71 16 3 O -0.33 -3.82 10.20 -40.68 -0.41 -4.23 16 4 C 0.56 7.19 7.97 34.55 0.28 7.47 16 5 O -0.49 -6.84 16.64 -19.24 -0.32 -7.16 16 6 C -0.04 -0.55 7.24 -14.38 -0.10 -0.65 16 7 N -0.41 -5.82 10.47 -12.06 -0.13 -5.95 16 8 C 0.10 1.36 11.17 -18.57 -0.21 1.15 16 9 C -0.25 -3.86 6.56 -36.33 -0.24 -4.10 16 10 C 0.57 11.08 7.80 -12.64 -0.10 10.98 16 11 O -0.53 -11.96 16.88 5.26 0.09 -11.88 16 12 N -0.70 -14.13 5.54 -62.64 -0.35 -14.48 16 13 C 0.25 6.27 5.43 -5.19 -0.03 6.25 16 14 C -0.55 -14.31 9.28 -34.44 -0.32 -14.63 16 15 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 16 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.88 -25.18 13.29 55.43 0.74 -24.44 16 18 Si 0.91 20.27 29.54 -169.99 -5.02 15.25 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 S 0.31 3.95 22.07 -107.50 -2.37 1.58 16 23 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.20 2.50 8.06 -52.49 -0.42 2.07 16 29 H 0.39 6.81 7.52 -40.82 -0.31 6.50 16 30 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 311.80 15.07 4.70 4.70 Total: -1.00 -31.25 311.80 -6.51 -37.75 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -3.22 Total: 0.49 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -0.21 Total: 8.36 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.26 Total: -44.87 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.65 Total: -23.26 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -2.37 Total: 1.58 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.25 -6.51 -37.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346623120.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.419 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds