Wall clock time and date at job start Tue Mar 31 2020 05:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99711 * 2 1 4 4 H 1.48499 * 109.46913 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47079 * 300.00005 * 3 2 1 6 6 H 1.48501 * 109.46992 * 60.00111 * 3 2 1 7 7 C 1.37877 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99828 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99923 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.63550 * 300.69725 * 9 7 2 11 11 C 1.55152 * 110.71825 * 177.55974 * 9 7 2 12 12 C 1.54909 * 101.58032 * 205.95483 * 11 9 7 13 13 N 1.47422 * 104.83564 * 37.00513 * 12 11 9 14 14 C 1.34770 * 125.65124 * 155.91495 * 13 12 11 15 15 O 1.21654 * 120.00023 * 179.97438 * 14 13 12 16 16 C 1.47182 * 119.99893 * 359.97438 * 14 13 12 17 17 C 1.35100 * 122.48566 * 179.73834 * 16 14 13 18 18 S 1.76190 * 108.21658 * 179.87671 * 17 16 14 19 19 C 1.76053 * 90.15611 * 0.31644 * 18 17 16 20 20 O 1.35499 * 125.17371 * 179.83701 * 19 18 17 21 21 N 1.29246 * 109.64683 * 359.81397 * 19 18 17 22 22 C 1.47027 * 108.69865 * 335.87617 * 13 12 11 23 23 H 0.97000 * 119.99959 * 359.97438 * 1 2 3 24 24 H 0.96700 * 114.00311 * 56.86306 * 10 9 7 25 25 H 1.09005 * 111.00538 * 324.02517 * 11 9 7 26 26 H 1.08998 * 111.00529 * 87.84162 * 11 9 7 27 27 H 1.09002 * 110.37204 * 155.85017 * 12 11 9 28 28 H 1.09005 * 110.36554 * 278.05837 * 12 11 9 29 29 H 1.07998 * 125.88770 * 359.95539 * 17 16 14 30 30 H 0.96698 * 113.99707 * 269.97041 * 20 19 18 31 31 H 1.09003 * 109.87825 * 241.63649 * 22 13 12 32 32 H 1.09001 * 109.88209 * 120.47703 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 8 0.4076 -2.5947 1.1479 11 6 2.2323 -3.6994 -0.0639 12 6 1.3489 -4.7895 -0.7204 13 7 0.5283 -4.0659 -1.7085 14 6 -0.0371 -4.6058 -2.8063 15 8 -0.6973 -3.9104 -3.5550 16 6 0.1443 -6.0367 -3.0994 17 6 -0.4037 -6.6308 -4.1820 18 16 0.0525 -8.3325 -4.1664 19 6 0.9475 -8.0839 -2.6709 20 8 1.6270 -9.0445 -1.9990 21 7 0.8582 -6.8455 -2.3118 22 6 0.4282 -2.6578 -1.2974 23 1 -0.4850 0.8400 0.0004 24 1 -0.2247 -1.8680 1.2334 25 1 3.0948 -3.4670 -0.6886 26 1 2.5461 -3.9997 0.9358 27 1 1.9712 -5.5343 -1.2166 28 1 0.7139 -5.2644 0.0276 29 1 -1.0148 -6.1458 -4.9288 30 1 1.0978 -9.5109 -1.3376 31 1 -0.6140 -2.4001 -1.1087 32 1 0.8361 -2.0142 -2.0768 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001557187773.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:14 Heat of formation + Delta-G solvation = -60.868920 kcal Electronic energy + Delta-G solvation = -20319.099882 eV Core-core repulsion = 16986.735307 eV Total energy + Delta-G solvation = -3332.364575 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.39589 -38.88775 -37.56435 -36.84254 -34.27738 -32.18031 -30.26028 -29.91286 -27.93270 -26.09302 -24.43627 -23.01143 -21.38452 -19.70423 -19.56081 -18.62775 -17.80076 -17.10665 -16.15243 -16.05548 -15.38704 -14.96046 -14.78046 -14.48701 -14.23917 -13.51732 -13.00796 -12.94567 -12.76906 -12.39313 -12.06372 -11.89614 -11.58371 -11.41542 -11.06413 -10.79897 -10.57022 -10.47055 -10.19823 -9.90158 -9.76372 -9.47929 -9.22406 -9.00421 -8.65925 -8.30571 -7.85831 -6.28302 -4.36878 0.27260 0.78164 1.29644 1.93395 3.20145 3.22338 3.29718 3.33523 3.61535 3.70472 4.27879 4.61756 4.99298 5.06567 5.13459 5.54264 5.59740 5.89446 5.97768 6.17104 6.40973 6.58921 6.81862 6.82784 6.90192 6.97513 7.24266 7.28703 7.40146 7.74243 8.01294 8.16881 8.59684 8.68242 9.31823 9.42191 10.79406 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.033295 B = 0.004405 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.766009 B = 6355.145825 C = 6793.470905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.536 4.536 8 H 0.068 0.932 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.121 4.121 12 C 0.106 3.894 13 N -0.588 5.588 14 C 0.589 3.411 15 O -0.546 6.546 16 C 0.040 3.960 17 C -0.168 4.168 18 S 0.083 5.917 19 C 0.254 3.746 20 O -0.431 6.431 21 N -0.448 5.448 22 C 0.102 3.898 23 H 0.270 0.730 24 H 0.384 0.616 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.195 0.805 30 H 0.408 0.592 31 H 0.068 0.932 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.142 -16.605 -4.966 17.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.159 4.159 12 C -0.017 4.017 13 N -0.318 5.318 14 C 0.373 3.627 15 O -0.425 6.425 16 C -0.092 4.092 17 C -0.309 4.309 18 S 0.330 5.670 19 C -0.067 4.067 20 O -0.238 6.238 21 N -0.175 5.175 22 C -0.019 4.019 23 H 0.080 0.920 24 H 0.235 0.765 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.212 0.788 30 H 0.266 0.734 31 H 0.086 0.914 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.257 -17.262 -5.770 18.203 hybrid contribution -0.382 1.987 0.365 2.056 sum -0.125 -15.276 -5.405 16.204 Atomic orbital electron populations 1.69654 1.06004 1.27848 1.50000 1.25087 0.95055 0.99798 0.93385 0.86342 0.80088 0.82699 0.77755 1.19568 1.20758 1.20731 1.21580 0.93800 0.90081 1.52014 0.91398 1.19501 0.86162 0.92280 0.81334 1.86094 1.53583 1.52665 1.47089 1.22813 0.97601 0.95212 1.00307 1.22547 0.93400 0.95057 0.90678 1.48613 1.48440 1.12711 1.22001 1.16689 0.80670 0.84015 0.81357 1.90807 1.41826 1.60996 1.48880 1.20215 0.99555 0.96015 0.93387 1.27091 1.05406 0.95548 1.02884 1.85196 1.46480 1.07945 1.27372 1.25196 0.97847 0.88895 0.94723 1.84860 1.37608 1.46970 1.54338 1.67058 1.17259 1.02112 1.31026 1.23114 1.01959 0.77483 0.99389 0.92002 0.76506 0.90692 0.90573 0.89470 0.91990 0.78813 0.73373 0.91396 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.92 10.97 55.43 0.61 -23.31 16 2 C 0.07 1.82 5.27 -17.82 -0.09 1.73 16 3 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.54 -14.16 8.12 -34.44 -0.28 -14.44 16 8 H 0.07 1.77 7.77 -52.49 -0.41 1.36 16 9 C 0.25 6.11 0.86 -89.94 -0.08 6.03 16 10 O -0.58 -14.95 13.09 -35.23 -0.46 -15.41 16 11 C -0.12 -2.54 6.22 -24.59 -0.15 -2.69 16 12 C 0.11 2.05 6.01 -2.53 -0.02 2.04 16 13 N -0.59 -12.74 3.33 -171.87 -0.57 -13.32 16 14 C 0.59 12.19 7.82 -12.63 -0.10 12.10 16 15 O -0.55 -12.64 16.99 5.23 0.09 -12.56 16 16 C 0.04 0.65 6.60 -84.59 -0.56 0.09 16 17 C -0.17 -2.18 10.84 29.62 0.32 -1.86 16 18 S 0.08 0.81 23.42 -107.50 -2.52 -1.71 16 19 C 0.25 2.94 8.88 51.67 0.46 3.39 16 20 O -0.43 -3.82 13.64 -18.19 -0.25 -4.06 16 21 N -0.45 -6.72 7.19 -11.34 -0.08 -6.81 16 22 C 0.10 2.51 5.39 -3.07 -0.02 2.50 16 23 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 24 H 0.38 10.03 7.17 45.56 0.33 10.36 16 25 H 0.07 1.52 8.04 -51.93 -0.42 1.10 16 26 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.09 1.56 5.99 -51.93 -0.31 1.25 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.19 2.25 8.01 -52.49 -0.42 1.83 16 30 H 0.41 1.40 9.06 45.56 0.41 1.82 16 31 H 0.07 1.81 8.01 -51.93 -0.42 1.39 16 32 H 0.07 1.83 7.82 -51.93 -0.41 1.43 16 LS Contribution 291.95 15.07 4.40 4.40 Total: -1.00 -31.17 291.95 -5.94 -37.10 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -1.62 Total: 11.28 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -0.51 Total: 8.89 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: -0.05 Total: -43.43 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.62 Total: -32.03 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.52 Total: -1.71 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.17 -5.94 -37.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557187773.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.768 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds