Wall clock time and date at job start Tue Mar 31 2020 05:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99715 * 2 1 4 4 H 1.48499 * 109.47349 * 264.98306 * 3 2 1 5 5 H 1.48500 * 109.47169 * 24.98779 * 3 2 1 6 6 H 1.48499 * 109.46786 * 144.98471 * 3 2 1 7 7 C 1.37872 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99666 * 185.16594 * 7 2 1 9 9 C 1.50696 * 120.00324 * 5.16915 * 7 2 1 10 10 O 1.42891 * 110.89073 * 59.46063 * 9 7 2 11 11 C 1.55160 * 111.00455 * 183.34668 * 9 7 2 12 12 C 1.54326 * 102.93981 * 153.61097 * 11 9 7 13 13 N 1.47027 * 107.27415 * 337.80715 * 12 11 9 14 14 C 1.34773 * 125.64611 * 178.98073 * 13 12 11 15 15 O 1.21651 * 119.99758 * 179.97438 * 14 13 12 16 16 C 1.47176 * 120.00499 * 359.97288 * 14 13 12 17 17 C 1.35090 * 122.48883 * 179.73499 * 16 14 13 18 18 S 1.76191 * 108.21986 * 179.90831 * 17 16 14 19 19 C 1.76055 * 90.15789 * 0.29725 * 18 17 16 20 20 O 1.35492 * 125.18323 * 179.86693 * 19 18 17 21 21 N 1.29258 * 109.63933 * 359.82165 * 19 18 17 22 22 C 1.47529 * 108.71254 * 358.94046 * 13 12 11 23 23 H 0.97004 * 120.00275 * 0.02562 * 1 2 3 24 24 H 0.96700 * 114.00352 * 294.09185 * 10 9 7 25 25 H 1.08994 * 110.71711 * 271.97246 * 11 9 7 26 26 H 1.08999 * 110.71918 * 35.25314 * 11 9 7 27 27 H 1.09001 * 109.88138 * 97.22545 * 12 11 9 28 28 H 1.09001 * 109.87910 * 218.23402 * 12 11 9 29 29 H 1.07997 * 125.89306 * 0.02562 * 17 16 14 30 30 H 0.96705 * 113.99690 * 269.95309 * 20 19 18 31 31 H 1.08993 * 110.36909 * 265.30777 * 22 13 12 32 32 H 1.08997 * 110.40302 * 142.95324 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6026 1.9853 -1.3947 5 1 1.3975 2.6809 0.5914 6 1 3.4896 1.4731 0.8034 7 6 2.0045 -1.1940 -0.0005 8 1 3.0812 -1.1959 0.0837 9 6 1.2556 -2.4964 -0.1187 10 8 0.5059 -2.5446 -1.3341 11 6 2.2224 -3.7054 -0.0133 12 6 1.3124 -4.8297 0.5248 13 7 0.1686 -4.1860 1.1875 14 6 -0.8635 -4.8268 1.7710 15 8 -1.7590 -4.1892 2.2920 16 6 -0.9073 -6.2979 1.7780 17 6 -1.9143 -6.9912 2.3526 18 16 -1.5909 -8.7101 2.1406 19 6 -0.0974 -8.3292 1.2899 20 8 0.7668 -9.2414 0.7831 21 7 0.0487 -7.0467 1.2215 22 6 0.3382 -2.7226 1.1089 23 1 -0.4851 0.8401 -0.0004 24 1 -0.2132 -1.8996 -1.3786 25 1 2.6205 -3.9674 -0.9935 26 1 3.0295 -3.4937 0.6881 27 1 0.9619 -5.4497 -0.3004 28 1 1.8623 -5.4412 1.2402 29 1 -2.7710 -6.5652 2.8536 30 1 1.4573 -9.5154 1.4023 31 1 0.8157 -2.3469 2.0138 32 1 -0.6253 -2.2361 0.9573 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001557187774.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:15 Heat of formation + Delta-G solvation = -61.706520 kcal Electronic energy + Delta-G solvation = -20348.548555 eV Core-core repulsion = 17016.147659 eV Total energy + Delta-G solvation = -3332.400896 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.35706 -38.87694 -37.54812 -36.80817 -34.21585 -32.20645 -30.28942 -29.93663 -27.88681 -26.07866 -24.43271 -22.99437 -21.32114 -19.66415 -19.61980 -18.60416 -17.76137 -17.07686 -16.14985 -15.97726 -15.22765 -15.14415 -14.72064 -14.44657 -14.28445 -13.64574 -13.02230 -12.86704 -12.77651 -12.36275 -12.03676 -11.81212 -11.59277 -11.40590 -11.01063 -10.79399 -10.53150 -10.44128 -10.17664 -9.95516 -9.73646 -9.50595 -9.30995 -8.98683 -8.67348 -8.33656 -7.76812 -6.25677 -4.34651 0.29425 0.80189 1.31694 1.96828 3.22433 3.24562 3.30152 3.32061 3.62448 3.73663 4.28818 4.64087 5.00621 5.08912 5.15592 5.52150 5.64476 5.84899 5.91584 6.18619 6.40128 6.58292 6.77718 6.83402 6.90935 6.97148 7.23924 7.30356 7.37287 7.76201 8.05597 8.17798 8.61780 8.69297 9.32681 9.38978 10.81555 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.036179 B = 0.004392 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.753940 B = 6374.150794 C = 6873.092083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.580 6.580 11 C -0.122 4.122 12 C 0.121 3.879 13 N -0.588 5.588 14 C 0.590 3.410 15 O -0.545 6.545 16 C 0.039 3.961 17 C -0.168 4.168 18 S 0.082 5.918 19 C 0.253 3.747 20 O -0.430 6.430 21 N -0.448 5.448 22 C 0.093 3.907 23 H 0.270 0.730 24 H 0.379 0.621 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.195 0.805 30 H 0.406 0.594 31 H 0.064 0.936 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.143 -16.627 4.820 17.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.388 6.388 11 C -0.160 4.160 12 C -0.002 4.002 13 N -0.318 5.318 14 C 0.374 3.626 15 O -0.425 6.425 16 C -0.092 4.092 17 C -0.309 4.309 18 S 0.329 5.671 19 C -0.067 4.067 20 O -0.237 6.237 21 N -0.174 5.174 22 C -0.028 4.028 23 H 0.080 0.920 24 H 0.229 0.771 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.212 0.788 30 H 0.265 0.735 31 H 0.083 0.917 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.711 -17.403 4.472 17.982 hybrid contribution 0.403 1.985 0.501 2.086 sum -0.308 -15.418 4.972 16.203 Atomic orbital electron populations 1.69738 1.06010 1.27893 1.49472 1.25069 0.95012 0.99729 0.93311 0.86425 0.79691 0.82367 0.78438 1.20310 1.21106 1.19776 1.21457 0.93981 0.90199 1.51904 0.91507 1.19629 0.86919 0.91825 0.80812 1.86134 1.50102 1.62437 1.40168 1.22706 0.97556 0.94942 1.00808 1.22009 0.86715 0.95199 0.96324 1.48635 1.20698 1.09855 1.52584 1.16671 0.82180 0.83869 0.79874 1.90808 1.37661 1.66397 1.47593 1.20220 0.91853 0.95950 1.01197 1.27094 1.04414 0.94007 1.05418 1.85180 1.23381 1.06051 1.52523 1.25132 0.94406 0.87878 0.99327 1.84874 1.42446 1.54944 1.41436 1.67027 1.28528 1.03347 1.18470 1.23438 1.02922 0.75555 1.00843 0.92024 0.77141 0.90758 0.90579 0.91501 0.92252 0.78828 0.73505 0.91726 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.93 10.76 55.43 0.60 -23.33 16 2 C 0.07 1.89 5.31 -17.82 -0.09 1.80 16 3 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.54 -14.08 8.25 -34.44 -0.28 -14.37 16 8 H 0.07 1.71 7.79 -52.49 -0.41 1.30 16 9 C 0.25 6.11 0.86 -89.62 -0.08 6.04 16 10 O -0.58 -15.06 13.14 -35.23 -0.46 -15.53 16 11 C -0.12 -2.52 6.13 -24.89 -0.15 -2.68 16 12 C 0.12 2.33 5.44 -3.06 -0.02 2.31 16 13 N -0.59 -12.72 3.33 -171.78 -0.57 -13.29 16 14 C 0.59 12.31 7.82 -12.63 -0.10 12.21 16 15 O -0.55 -12.70 16.92 5.23 0.09 -12.61 16 16 C 0.04 0.65 6.60 -84.60 -0.56 0.10 16 17 C -0.17 -2.22 10.84 29.61 0.32 -1.90 16 18 S 0.08 0.82 23.42 -107.50 -2.52 -1.70 16 19 C 0.25 3.00 8.88 51.68 0.46 3.46 16 20 O -0.43 -3.92 13.64 -18.17 -0.25 -4.17 16 21 N -0.45 -6.85 7.49 -11.34 -0.08 -6.93 16 22 C 0.09 2.27 5.42 -2.47 -0.01 2.26 16 23 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 24 H 0.38 10.00 7.59 45.56 0.35 10.35 16 25 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 26 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 27 H 0.07 1.31 7.50 -51.93 -0.39 0.92 16 28 H 0.06 1.03 7.61 -51.93 -0.40 0.63 16 29 H 0.19 2.29 8.01 -52.49 -0.42 1.87 16 30 H 0.41 1.43 9.06 45.56 0.41 1.84 16 31 H 0.06 1.61 8.03 -51.93 -0.42 1.19 16 32 H 0.09 2.40 7.36 -51.93 -0.38 2.01 16 LS Contribution 292.53 15.07 4.41 4.41 Total: -1.00 -31.32 292.53 -5.96 -37.28 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -1.63 Total: 11.25 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -0.52 Total: 9.22 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: -0.06 Total: -43.55 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -0.62 Total: -32.31 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.52 Total: -1.70 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.32 -5.96 -37.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557187774.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.427 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds