Wall clock time and date at job start Tue Mar 31 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.46975 * 2 1 4 4 H 1.08994 * 109.47055 * 304.99821 * 3 2 1 5 5 O 1.42899 * 109.47068 * 65.00402 * 3 2 1 6 6 C 1.35004 * 116.99835 * 209.99969 * 5 3 2 7 7 O 1.21692 * 120.00034 * 359.97438 * 6 5 3 8 8 C 1.41748 * 119.99983 * 179.97438 * 6 5 3 9 9 S 1.75825 * 125.45877 * 0.02967 * 8 6 5 10 10 C 1.75649 * 91.49232 * 179.97438 * 9 8 6 11 11 C 1.32867 * 110.86923 * 0.02562 * 10 9 8 12 12 C 1.39681 * 115.27378 * 359.72392 * 11 10 9 13 13 C 1.40512 * 123.35789 * 180.29931 * 12 11 10 14 14 H 1.07999 * 119.99286 * 154.36183 * 13 12 11 15 15 C 1.40338 * 120.00099 * 334.35271 * 13 12 11 16 16 N 1.30621 * 119.99602 * 162.68373 * 15 13 12 17 17 Si 1.86797 * 120.00155 * 342.68995 * 15 13 12 18 18 H 1.48505 * 109.47330 * 94.08403 * 17 15 13 19 19 H 1.48500 * 109.47145 * 214.08290 * 17 15 13 20 20 H 1.48501 * 109.47345 * 334.07986 * 17 15 13 21 21 C 1.50700 * 109.46874 * 184.99902 * 3 2 1 22 22 O 1.20827 * 120.00043 * 245.00011 * 21 3 2 23 23 O 1.34226 * 120.00087 * 65.00057 * 21 3 2 24 24 H 1.09000 * 109.47465 * 59.99748 * 1 2 3 25 25 H 1.09001 * 109.47528 * 300.00088 * 1 2 3 26 26 H 1.08998 * 109.47218 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47163 * 119.99797 * 2 1 3 28 28 H 1.09001 * 109.47528 * 239.99912 * 2 1 3 29 29 H 1.08000 * 124.56488 * 179.97438 * 10 9 8 30 30 H 1.08000 * 122.36464 * 179.97438 * 11 10 9 31 31 H 0.97000 * 119.99865 * 180.02562 * 16 15 13 32 32 H 0.96699 * 117.00548 * 179.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 8 1.6619 2.0814 1.2211 6 6 1.4516 3.4142 1.1759 7 8 1.5864 4.0163 0.1270 8 6 1.0737 4.1122 2.3503 9 16 0.8396 3.3893 3.9358 10 6 0.4260 4.9464 4.6355 11 6 0.4717 5.9052 3.7169 12 6 0.8330 5.4857 2.4344 13 6 0.9400 6.3577 1.3378 14 1 1.5896 6.1089 0.5117 15 6 0.2027 7.5516 1.3160 16 7 0.5367 8.5104 0.4943 17 14 -1.2560 7.7696 2.4623 18 1 -0.8133 8.4581 3.7015 19 1 -2.2978 8.5853 1.7881 20 1 -1.8166 6.4388 2.8087 21 6 3.5418 1.4443 -0.1238 22 8 4.2224 1.8595 0.7841 23 8 4.1236 0.9847 -1.2427 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 0.1684 5.1032 5.6725 30 1 0.2493 6.9369 3.9464 31 1 0.0273 9.3358 0.4795 32 1 5.0897 1.0062 -1.2760 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589586526.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:54 Heat of formation + Delta-G solvation = -159.747525 kcal Electronic energy + Delta-G solvation = -20259.094036 eV Core-core repulsion = 16890.149012 eV Total energy + Delta-G solvation = -3368.945024 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.060 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.42676 -38.97175 -37.12829 -35.88544 -35.43123 -33.58217 -33.31870 -29.49503 -28.14269 -26.86898 -22.89548 -22.51330 -21.56329 -20.34896 -19.02849 -18.21912 -17.79458 -16.91744 -16.41780 -15.78678 -15.42241 -15.17607 -14.35523 -14.19084 -13.94354 -13.75218 -13.40662 -13.30878 -12.58515 -12.25868 -11.96961 -11.81761 -11.74740 -11.49267 -11.43197 -11.14391 -11.01040 -10.76676 -10.74744 -10.57556 -10.13250 -9.74550 -9.65952 -9.56606 -8.99478 -7.75645 -7.50177 -7.37951 -4.77142 1.62399 2.41118 2.77975 2.82287 2.95404 2.97347 3.01415 3.38198 3.44341 3.64829 3.77228 4.13403 4.83631 4.95670 5.06103 5.27545 5.42176 5.64579 5.74000 5.78980 5.93910 6.06299 6.16349 6.38010 6.50518 6.60966 6.69837 6.78591 7.10071 7.36900 7.61834 8.00862 8.08134 8.19883 8.51977 9.18115 9.57785 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.019993 B = 0.005942 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.130902 B = 4710.994142 C = 5223.801829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C 0.105 3.895 4 H 0.116 0.884 5 O -0.336 6.336 6 C 0.531 3.469 7 O -0.541 6.541 8 C -0.407 4.407 9 S 0.022 5.978 10 C -0.173 4.173 11 C -0.170 4.170 12 C 0.106 3.894 13 C -0.341 4.341 14 H 0.124 0.876 15 C 0.073 3.927 16 N -0.754 5.754 17 Si 0.913 3.087 18 H -0.262 1.262 19 H -0.279 1.279 20 H -0.237 1.237 21 C 0.461 3.539 22 O -0.496 6.496 23 O -0.517 6.517 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.147 0.853 30 H 0.125 0.875 31 H 0.297 0.703 32 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.399 -9.342 0.601 9.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C 0.046 3.954 4 H 0.134 0.866 5 O -0.255 6.255 6 C 0.387 3.613 7 O -0.437 6.437 8 C -0.524 4.524 9 S 0.280 5.720 10 C -0.309 4.309 11 C -0.203 4.203 12 C 0.096 3.904 13 C -0.370 4.370 14 H 0.142 0.858 15 C -0.153 4.153 16 N -0.375 5.375 17 Si 0.738 3.262 18 H -0.187 1.187 19 H -0.206 1.206 20 H -0.160 1.160 21 C 0.301 3.699 22 O -0.382 6.382 23 O -0.330 6.330 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.165 0.835 30 H 0.142 0.858 31 H 0.108 0.892 32 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -1.473 -10.311 0.983 10.462 hybrid contribution 0.204 1.889 -0.218 1.912 sum -1.269 -8.422 0.765 8.552 Atomic orbital electron populations 1.21741 0.93983 1.01947 1.03198 1.21583 0.97794 0.91764 1.03604 1.21453 0.86387 0.96470 0.91053 0.86635 1.86408 1.80155 1.25327 1.33643 1.18292 0.75929 0.78502 0.88528 1.90761 1.54278 1.66837 1.31858 1.20691 1.42925 0.94862 0.93888 1.83317 1.75027 1.09143 1.04481 1.25271 1.06221 0.97262 1.02109 1.20303 1.06676 0.99386 0.93972 1.16836 0.90906 0.90257 0.92421 1.20055 1.16527 0.96839 1.03582 0.85810 1.26672 0.99206 0.93943 0.95517 1.69572 1.34623 1.03990 1.29348 0.86344 0.79694 0.80923 0.79275 1.18745 1.20554 1.15986 1.24201 0.92907 0.73485 0.79266 1.90743 1.65223 1.42116 1.40076 1.84514 1.28539 1.78149 1.41753 0.92357 0.91360 0.92128 0.90507 0.89365 0.83500 0.85793 0.89201 0.73530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.81 37.15 0.36 -1.50 16 2 C -0.11 -1.44 5.62 -26.73 -0.15 -1.59 16 3 C 0.10 1.88 2.42 -27.88 -0.07 1.81 16 4 H 0.12 2.12 7.11 -51.93 -0.37 1.75 16 5 O -0.34 -7.39 8.59 -48.09 -0.41 -7.80 16 6 C 0.53 13.58 7.68 32.07 0.25 13.82 16 7 O -0.54 -14.94 13.58 -19.41 -0.26 -15.20 16 8 C -0.41 -10.42 6.36 -37.70 -0.24 -10.66 16 9 S 0.02 0.47 23.02 -107.50 -2.47 -2.00 16 10 C -0.17 -3.47 11.11 28.88 0.32 -3.15 16 11 C -0.17 -3.80 7.33 -40.89 -0.30 -4.10 16 12 C 0.11 2.73 5.15 -107.96 -0.56 2.18 16 13 C -0.34 -9.24 8.91 -37.94 -0.34 -9.58 16 14 H 0.12 3.76 6.27 -52.49 -0.33 3.43 16 15 C 0.07 1.80 5.47 -17.28 -0.09 1.70 16 16 N -0.75 -18.59 13.92 55.57 0.77 -17.82 16 17 Si 0.91 18.58 24.54 -169.99 -4.17 14.41 16 18 H -0.26 -4.95 6.68 56.52 0.38 -4.58 16 19 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.24 -4.97 6.73 56.52 0.38 -4.59 16 21 C 0.46 8.30 7.62 36.01 0.27 8.57 16 22 O -0.50 -10.86 17.26 -25.46 -0.44 -11.30 16 23 O -0.52 -6.91 13.39 -39.25 -0.53 -7.44 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.97 7.82 -51.93 -0.41 0.57 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.09 0.94 8.12 -51.93 -0.42 0.52 16 29 H 0.15 2.33 8.06 -52.49 -0.42 1.91 16 30 H 0.12 2.58 4.51 -52.49 -0.24 2.35 16 31 H 0.30 6.39 8.29 -40.82 -0.34 6.06 16 32 H 0.41 3.60 9.10 45.56 0.41 4.01 16 LS Contribution 296.02 15.07 4.46 4.46 Total: -1.00 -31.95 296.02 -5.81 -37.77 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -2.22 Total: 7.42 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -0.54 Total: -2.50 kcal Atomic # 7 Polarization: -18.59 SS G_CDS: 0.77 Total: -17.82 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -1.64 Total: -41.74 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -4.17 Total: 14.41 kcal Atomic # 16 Polarization: 0.47 SS G_CDS: -2.47 Total: -2.00 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.95 -5.81 -37.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589586526.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.982 kcal (2) G-P(sol) polarization free energy of solvation -31.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds