Wall clock time and date at job start Tue Mar 31 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47068 * 2 1 4 4 H 1.09001 * 109.46755 * 55.00109 * 3 2 1 5 5 O 1.42903 * 109.47197 * 295.00269 * 3 2 1 6 6 C 1.35001 * 117.00061 * 89.99764 * 5 3 2 7 7 O 1.21685 * 120.00067 * 0.02562 * 6 5 3 8 8 C 1.41754 * 119.99646 * 180.02562 * 6 5 3 9 9 S 1.75834 * 125.45816 * 0.02562 * 8 6 5 10 10 C 1.75655 * 91.49022 * 179.97438 * 9 8 6 11 11 C 1.32873 * 110.86633 * 0.02562 * 10 9 8 12 12 C 1.39674 * 115.27662 * 359.75841 * 11 10 9 13 13 C 1.40509 * 123.36059 * 180.27636 * 12 11 10 14 14 H 1.07999 * 120.00204 * 154.79717 * 13 12 11 15 15 C 1.40344 * 119.99900 * 334.79979 * 13 12 11 16 16 N 1.30615 * 119.99977 * 349.96733 * 15 13 12 17 17 Si 1.86805 * 119.99771 * 169.96890 * 15 13 12 18 18 H 1.48493 * 109.47379 * 59.99579 * 17 15 13 19 19 H 1.48498 * 109.47042 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46925 * 299.99590 * 17 15 13 21 21 C 1.50694 * 109.47189 * 174.99766 * 3 2 1 22 22 O 1.20826 * 119.99914 * 115.00450 * 21 3 2 23 23 O 1.34232 * 120.00455 * 295.00107 * 21 3 2 24 24 H 1.08996 * 109.47304 * 299.99388 * 1 2 3 25 25 H 1.09003 * 109.46846 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47171 * 60.00176 * 1 2 3 27 27 H 1.08997 * 109.46921 * 119.99896 * 2 1 3 28 28 H 1.08997 * 109.47046 * 240.00132 * 2 1 3 29 29 H 1.07994 * 124.56670 * 180.02562 * 10 9 8 30 30 H 1.07997 * 122.35810 * 180.02562 * 11 10 9 31 31 H 0.97003 * 119.99806 * 180.02562 * 16 15 13 32 32 H 0.96695 * 116.99979 * 179.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 8 1.6619 2.0814 -1.2210 6 6 0.4719 2.7188 -1.2364 7 8 -0.2246 2.7312 -0.2386 8 6 0.0338 3.3736 -2.4148 9 16 0.9204 3.4455 -3.9315 10 6 -0.3537 4.3915 -4.6845 11 6 -1.3465 4.6135 -3.8298 12 6 -1.1738 4.0611 -2.5585 13 6 -2.1190 4.1868 -1.5265 14 1 -2.1594 3.4493 -0.7385 15 6 -3.0105 5.2706 -1.5197 16 7 -2.8398 6.2620 -2.3528 17 14 -4.4414 5.2954 -0.3191 18 1 -3.9219 5.2494 1.0712 19 1 -5.2281 6.5400 -0.5122 20 1 -5.3115 4.1166 -0.5616 21 6 3.5418 1.4443 0.1239 22 8 4.2224 1.8596 -0.7840 23 8 4.1236 0.9847 1.2428 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 -0.3330 4.7450 -5.7047 30 1 -2.2270 5.1774 -4.1003 31 1 -3.4558 7.0113 -2.3478 32 1 5.0898 1.0056 1.2757 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589586533.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:55 Heat of formation + Delta-G solvation = -160.858819 kcal Electronic energy + Delta-G solvation = -20260.192569 eV Core-core repulsion = 16891.199355 eV Total energy + Delta-G solvation = -3368.993214 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.060 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.44798 -39.17492 -36.93483 -36.01113 -35.19472 -33.31784 -33.14405 -29.26493 -28.09216 -26.57623 -22.96965 -22.46904 -21.35532 -20.10801 -18.88049 -18.31833 -17.46401 -16.83857 -16.22843 -15.87758 -15.50915 -15.15075 -14.91354 -13.96419 -13.78888 -13.57861 -12.95670 -12.57708 -12.44408 -12.04195 -11.91365 -11.67101 -11.57936 -11.52348 -11.41996 -11.22393 -11.13109 -10.63518 -10.54016 -10.37883 -10.20666 -9.72484 -9.69645 -9.30723 -8.90322 -7.60034 -7.27000 -7.22081 -4.73411 1.87693 2.29268 2.68731 2.89000 2.89885 2.93466 3.13858 3.57205 3.67140 3.74027 4.06909 4.16166 4.95086 5.09647 5.13572 5.30440 5.48667 5.74857 5.96040 6.03961 6.13496 6.32787 6.49150 6.62014 6.69127 6.75208 6.98407 7.12642 7.38018 7.45496 7.66540 7.98123 8.16893 8.37496 8.48491 9.21011 9.66192 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.018214 B = 0.006021 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.914313 B = 4648.927386 C = 5639.067869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.104 3.896 4 H 0.116 0.884 5 O -0.343 6.343 6 C 0.535 3.465 7 O -0.542 6.542 8 C -0.411 4.411 9 S -0.007 6.007 10 C -0.200 4.200 11 C -0.111 4.111 12 C 0.143 3.857 13 C -0.360 4.360 14 H 0.114 0.886 15 C 0.065 3.935 16 N -0.762 5.762 17 Si 0.929 3.071 18 H -0.256 1.256 19 H -0.274 1.274 20 H -0.257 1.257 21 C 0.480 3.520 22 O -0.493 6.493 23 O -0.514 6.514 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.140 0.860 30 H 0.145 0.855 31 H 0.293 0.707 32 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.087 -5.801 3.377 7.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C 0.046 3.954 4 H 0.133 0.867 5 O -0.263 6.263 6 C 0.392 3.608 7 O -0.439 6.439 8 C -0.528 4.528 9 S 0.250 5.750 10 C -0.334 4.334 11 C -0.144 4.144 12 C 0.132 3.868 13 C -0.390 4.390 14 H 0.132 0.868 15 C -0.159 4.159 16 N -0.386 5.386 17 Si 0.751 3.249 18 H -0.180 1.180 19 H -0.199 1.199 20 H -0.181 1.181 21 C 0.320 3.680 22 O -0.378 6.378 23 O -0.327 6.327 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.158 0.842 30 H 0.162 0.838 31 H 0.104 0.896 32 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 3.973 -6.023 2.806 7.742 hybrid contribution -1.118 0.827 0.895 1.654 sum 2.855 -5.196 3.701 6.989 Atomic orbital electron populations 1.21809 0.93412 1.01159 1.04088 1.21905 0.98398 0.93274 1.03117 1.21234 0.86696 0.96355 0.91127 0.86698 1.86352 1.40258 1.65474 1.34187 1.18256 0.77671 0.76777 0.88057 1.90719 1.55210 1.62524 1.35408 1.20932 1.03246 1.32187 0.96403 1.83432 1.25004 1.58729 1.07882 1.25307 0.99122 1.06500 1.02495 1.20572 1.00028 1.00762 0.93023 1.16897 0.89273 0.88037 0.92580 1.20192 1.07129 1.05218 1.06504 0.86809 1.26468 0.98718 0.94479 0.96264 1.69661 1.33411 1.05554 1.29942 0.85985 0.79116 0.78904 0.80863 1.18045 1.19883 1.18111 1.23289 0.91705 0.73676 0.79291 1.90741 1.65228 1.42053 1.39778 1.84498 1.28654 1.78211 1.41347 0.91472 0.92908 0.91652 0.89967 0.90954 0.84186 0.83812 0.89578 0.73169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 8.55 37.16 0.32 -2.07 16 2 C -0.13 -1.94 5.62 -26.73 -0.15 -2.10 16 3 C 0.10 1.87 2.74 -27.89 -0.08 1.80 16 4 H 0.12 2.09 7.11 -51.93 -0.37 1.72 16 5 O -0.34 -7.72 9.00 -48.08 -0.43 -8.16 16 6 C 0.54 13.23 6.14 32.07 0.20 13.43 16 7 O -0.54 -13.62 11.46 -19.41 -0.22 -13.84 16 8 C -0.41 -10.59 6.36 -37.70 -0.24 -10.83 16 9 S -0.01 -0.16 23.02 -107.50 -2.47 -2.64 16 10 C -0.20 -4.34 11.11 28.88 0.32 -4.02 16 11 C -0.11 -2.65 8.81 -40.90 -0.36 -3.01 16 12 C 0.14 3.71 5.53 -107.96 -0.60 3.12 16 13 C -0.36 -9.18 8.40 -37.93 -0.32 -9.50 16 14 H 0.11 2.97 6.07 -52.49 -0.32 2.65 16 15 C 0.06 1.48 5.37 -17.28 -0.09 1.39 16 16 N -0.76 -17.53 10.87 55.57 0.60 -16.92 16 17 Si 0.93 17.35 29.57 -169.99 -5.03 12.32 16 18 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 19 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 20 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 21 C 0.48 7.89 7.66 36.00 0.28 8.17 16 22 O -0.49 -9.79 17.26 -25.46 -0.44 -10.23 16 23 O -0.51 -6.04 13.39 -39.26 -0.53 -6.56 16 24 H 0.07 1.12 7.75 -51.93 -0.40 0.72 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.28 6.05 -51.93 -0.31 0.96 16 27 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.14 2.55 8.06 -52.49 -0.42 2.13 16 30 H 0.14 3.35 6.37 -52.49 -0.33 3.02 16 31 H 0.29 5.99 8.29 -40.82 -0.34 5.66 16 32 H 0.41 2.82 9.10 45.56 0.41 3.23 16 LS Contribution 295.40 15.07 4.45 4.45 Total: -1.00 -29.94 295.40 -6.94 -36.88 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -2.15 Total: 8.33 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -0.72 Total: -3.63 kcal Atomic # 7 Polarization: -17.53 SS G_CDS: 0.60 Total: -16.92 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -1.62 Total: -38.79 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.47 Total: -2.64 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.94 -6.94 -36.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589586533.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.980 kcal (2) G-P(sol) polarization free energy of solvation -29.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds