Wall clock time and date at job start Tue Mar 31 2020 05:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47423 * 2 1 4 4 C 1.50700 * 109.46860 * 120.00372 * 2 1 3 5 5 S 1.71010 * 125.49151 * 305.34793 * 4 2 1 6 6 C 1.75963 * 90.66965 * 179.97438 * 5 4 2 7 7 N 1.38167 * 125.19525 * 179.97438 * 6 5 4 8 8 C 1.34772 * 119.99786 * 179.97438 * 7 6 5 9 9 O 1.21794 * 120.00121 * 359.97438 * 8 7 6 10 10 C 1.41571 * 120.00307 * 179.97438 * 8 7 6 11 11 H 1.08001 * 119.99326 * 5.11588 * 10 8 7 12 12 C 1.40151 * 120.00645 * 185.10911 * 10 8 7 13 13 N 1.30621 * 119.99739 * 354.89113 * 12 10 8 14 14 Si 1.86794 * 120.00197 * 174.88867 * 12 10 8 15 15 H 1.48498 * 109.47327 * 95.00102 * 14 12 10 16 16 H 1.48508 * 109.47130 * 215.00211 * 14 12 10 17 17 H 1.48496 * 109.47306 * 334.99779 * 14 12 10 18 18 N 1.29747 * 109.60235 * 359.75310 * 6 5 4 19 19 C 1.32771 * 115.90218 * 0.44569 * 18 6 5 20 20 C 1.47134 * 122.59073 * 179.79888 * 19 18 6 21 21 O 1.21556 * 119.99920 * 174.24800 * 20 19 18 22 22 O 1.34808 * 120.00161 * 354.24581 * 20 19 18 23 23 H 1.09007 * 109.46985 * 60.00017 * 1 2 3 24 24 H 1.09001 * 109.47431 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47468 * 300.00130 * 1 2 3 26 26 H 1.09002 * 109.47046 * 239.99542 * 2 1 3 27 27 H 1.08999 * 109.47085 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47666 * 299.99997 * 3 2 1 29 29 H 1.09002 * 109.47384 * 59.99749 * 3 2 1 30 30 H 0.96997 * 119.99995 * 359.97438 * 7 6 5 31 31 H 0.97003 * 120.00162 * 179.97438 * 13 12 10 32 32 H 0.96700 * 116.99593 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 1.2304 5 16 1.6037 -0.3293 2.8415 6 6 2.6326 -1.6238 3.4433 7 7 2.8079 -1.9479 4.7749 8 6 3.6237 -2.9638 5.1193 9 8 4.2060 -3.5965 4.2568 10 6 3.8039 -3.2956 6.4838 11 1 3.2256 -2.7904 7.2432 12 6 4.7324 -4.2798 6.8490 13 7 5.3590 -4.9608 5.9272 14 14 5.0740 -4.6177 8.6541 15 1 4.2281 -5.7478 9.1150 16 1 6.5065 -4.9679 8.8298 17 1 4.7593 -3.4060 9.4528 18 7 3.1978 -2.2303 2.4452 19 6 2.9015 -1.7617 1.2387 20 6 3.4627 -2.3359 0.0058 21 8 3.0802 -1.9399 -1.0780 22 8 4.4009 -3.3012 0.0779 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4423 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 2.3439 -1.4442 5.4618 31 1 6.0020 -5.6418 6.1799 32 1 4.7393 -3.6478 -0.7590 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592111622.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:18 Heat of formation + Delta-G solvation = -83.475310 kcal Electronic energy + Delta-G solvation = -19920.927360 eV Core-core repulsion = 16587.582498 eV Total energy + Delta-G solvation = -3333.344862 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.31939 -38.87778 -37.43840 -36.04301 -35.17111 -33.48538 -32.44074 -28.88886 -27.12776 -26.90808 -25.61704 -22.90333 -21.27729 -20.61357 -19.11210 -18.69307 -17.54170 -16.49004 -16.10675 -15.78935 -15.55136 -15.41528 -14.29096 -14.26983 -14.07767 -13.63821 -13.25325 -13.02486 -12.63093 -12.40894 -12.12292 -11.75794 -11.53053 -11.36071 -11.28470 -11.25846 -11.21294 -11.10909 -10.73554 -10.39745 -9.79434 -9.74326 -9.12339 -8.99557 -8.94526 -7.70317 -7.32519 -6.44000 -4.98755 0.86546 1.37346 1.90509 2.31005 3.02056 3.09477 3.13447 3.44064 3.63917 3.88588 4.15337 4.39113 4.81089 4.97460 5.14815 5.21392 5.59005 5.61708 5.64087 5.73533 5.81991 5.96054 6.04721 6.22961 6.26662 6.35415 6.81489 7.15285 7.22400 7.70287 7.88268 8.07219 8.39713 8.71448 9.09282 10.30773 10.49623 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.027110 B = 0.004756 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.591235 B = 5885.358915 C = 6729.147686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.141 4.141 4 C -0.208 4.208 5 S 0.097 5.903 6 C 0.331 3.669 7 N -0.638 5.638 8 C 0.529 3.471 9 O -0.511 6.511 10 C -0.533 4.533 11 H 0.073 0.927 12 C 0.087 3.913 13 N -0.742 5.742 14 Si 0.916 3.084 15 H -0.270 1.270 16 H -0.276 1.276 17 H -0.262 1.262 18 N -0.440 5.440 19 C 0.051 3.949 20 C 0.570 3.430 21 O -0.520 6.520 22 O -0.482 6.482 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.126 0.874 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.404 0.596 31 H 0.275 0.725 32 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.889 9.288 -6.490 13.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.061 4.061 3 C -0.198 4.198 4 C -0.335 4.335 5 S 0.351 5.649 6 C -0.041 4.041 7 N -0.289 5.289 8 C 0.335 3.665 9 O -0.387 6.387 10 C -0.569 4.569 11 H 0.091 0.909 12 C -0.137 4.137 13 N -0.369 5.369 14 Si 0.740 3.260 15 H -0.195 1.195 16 H -0.201 1.201 17 H -0.186 1.186 18 N -0.162 5.162 19 C -0.084 4.084 20 C 0.413 3.587 21 O -0.411 6.411 22 O -0.290 6.290 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.144 0.856 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.239 0.761 31 H 0.086 0.914 32 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -6.794 9.127 -6.335 13.023 hybrid contribution 0.521 -0.518 0.066 0.738 sum -6.273 8.608 -6.269 12.360 Atomic orbital electron populations 1.21881 0.94301 1.02109 1.01664 1.20104 0.95598 0.95591 0.94817 1.21860 1.01414 0.94916 1.01652 1.25138 1.05567 1.03037 0.99717 1.83527 1.47646 1.36048 0.97692 1.24998 0.94756 0.92896 0.91419 1.44509 1.48152 1.36255 1.00014 1.17395 0.79318 0.78851 0.90966 1.90827 1.47142 1.50051 1.50686 1.19923 1.23865 1.22043 0.91073 0.90874 1.25758 0.94348 0.94224 0.99380 1.70007 1.17708 1.14927 1.34283 0.86205 0.78314 0.79486 0.81977 1.19526 1.20110 1.18562 1.67207 1.25335 1.27729 0.95950 1.19077 1.01158 0.97136 0.91019 1.19778 0.75780 0.75948 0.87171 1.90721 1.60173 1.60656 1.29548 1.84885 1.52689 1.50902 1.40496 0.92080 0.92401 0.92795 0.85628 0.92531 0.92105 0.92791 0.76102 0.91376 0.73720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.04 37.16 0.34 -1.30 16 2 C -0.04 -0.56 3.11 -91.78 -0.29 -0.84 16 3 C -0.14 -1.64 9.16 37.15 0.34 -1.30 16 4 C -0.21 -3.47 5.07 -34.97 -0.18 -3.65 16 5 S 0.10 1.50 22.65 -107.50 -2.43 -0.94 16 6 C 0.33 7.01 8.22 -88.06 -0.72 6.29 16 7 N -0.64 -13.96 5.36 -14.66 -0.08 -14.04 16 8 C 0.53 14.50 7.52 -14.99 -0.11 14.39 16 9 O -0.51 -16.27 13.52 5.11 0.07 -16.20 16 10 C -0.53 -14.01 9.30 -37.59 -0.35 -14.36 16 11 H 0.07 1.70 7.85 -52.49 -0.41 1.28 16 12 C 0.09 2.27 5.49 -17.35 -0.10 2.17 16 13 N -0.74 -21.17 11.74 55.56 0.65 -20.52 16 14 Si 0.92 18.77 29.56 -169.99 -5.03 13.74 16 15 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 16 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 17 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 18 N -0.44 -10.43 8.63 -10.50 -0.09 -10.52 16 19 C 0.05 1.03 6.69 -84.51 -0.56 0.47 16 20 C 0.57 10.63 8.30 34.34 0.29 10.91 16 21 O -0.52 -9.21 14.59 -19.31 -0.28 -9.50 16 22 O -0.48 -8.53 13.35 -40.79 -0.54 -9.08 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.58 7.83 -51.93 -0.41 0.18 16 26 H 0.13 1.91 4.90 -51.93 -0.25 1.66 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.40 7.07 8.78 -40.82 -0.36 6.71 16 31 H 0.28 7.07 8.29 -40.82 -0.34 6.73 16 32 H 0.41 4.52 9.11 45.56 0.42 4.93 16 LS Contribution 300.08 15.07 4.52 4.52 Total: -1.00 -35.31 300.08 -6.82 -42.13 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -2.26 Total: 7.61 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -1.35 Total: 12.78 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.48 Total: -45.08 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -0.76 Total: -34.77 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.43 Total: -0.94 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -35.31 -6.82 -42.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592111622.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.343 kcal (2) G-P(sol) polarization free energy of solvation -35.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds