Wall clock time and date at job start Tue Mar 31 2020 05:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46915 * 2 1 4 4 C 1.50691 * 109.47141 * 239.99671 * 2 1 3 5 5 H 1.08011 * 119.99994 * 245.64383 * 4 2 1 6 6 C 1.37871 * 120.00306 * 65.64237 * 4 2 1 7 7 N 1.31519 * 120.00387 * 197.14740 * 6 4 2 8 8 Si 1.86804 * 119.99901 * 17.42761 * 6 4 2 9 9 H 1.48495 * 109.47139 * 179.72427 * 8 6 4 10 10 H 1.48499 * 109.46650 * 299.72174 * 8 6 4 11 11 H 1.48501 * 109.46998 * 59.72245 * 8 6 4 12 12 C 1.50701 * 109.46677 * 119.99709 * 2 1 3 13 13 O 1.20823 * 120.00008 * 120.00691 * 12 2 1 14 14 O 1.34232 * 120.00224 * 299.99590 * 12 2 1 15 15 C 1.45193 * 117.00228 * 180.02562 * 14 12 2 16 16 C 1.50704 * 109.47265 * 180.02562 * 15 14 12 17 17 C 1.33855 * 124.51789 * 89.72747 * 16 15 14 18 18 C 1.37413 * 115.11131 * 179.78522 * 17 16 15 19 19 C 1.36744 * 113.28689 * 0.49311 * 18 17 16 20 20 C 1.46392 * 125.46588 * 179.75384 * 19 18 17 21 21 O 1.21634 * 119.99673 * 0.02562 * 20 19 18 22 22 O 1.34897 * 120.00441 * 179.97438 * 20 19 18 23 23 S 1.70616 * 124.51782 * 270.02479 * 16 15 14 24 24 H 1.08998 * 109.46828 * 306.32149 * 1 2 3 25 25 H 1.08992 * 109.46594 * 66.32055 * 1 2 3 26 26 H 1.08996 * 109.46758 * 186.31975 * 1 2 3 27 27 H 0.97004 * 119.99724 * 355.22179 * 7 6 4 28 28 H 1.08997 * 109.47321 * 300.00748 * 15 14 12 29 29 H 1.09002 * 109.46934 * 60.00207 * 15 14 12 30 30 H 1.08007 * 122.44658 * 359.97438 * 17 16 15 31 31 H 1.07998 * 123.35470 * 180.26383 * 18 17 16 32 32 H 0.96698 * 117.00111 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.5761 -1.6387 -1.1338 6 6 1.7979 -0.1756 -2.4793 7 7 1.9235 -0.9277 -3.5509 8 14 1.3096 1.6194 -2.6500 9 1 1.1231 1.9472 -4.0862 10 1 0.0394 1.8584 -1.9187 11 1 2.3780 2.4793 -2.0806 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1198 14 8 1.7081 -0.2517 2.4497 15 6 2.2276 -0.9855 3.5897 16 6 1.7625 -0.3289 4.8640 17 6 0.6258 -0.6322 5.5025 18 6 0.3936 0.0842 6.6519 19 6 1.3754 0.9948 6.9290 20 6 1.3949 1.8990 8.0802 21 8 0.4846 1.8765 8.8866 22 8 2.4229 2.7563 8.2472 23 16 2.6112 0.9051 5.6813 24 1 -0.3633 0.6087 0.8280 25 1 -0.3632 0.4127 -0.9411 26 1 -0.3633 -1.0214 0.1131 27 1 2.2477 -1.8382 -3.4691 28 1 1.8642 -2.0126 3.5570 29 1 3.3171 -0.9844 3.5567 30 1 -0.0574 -1.3871 5.1423 31 1 -0.4793 -0.0552 7.2723 32 1 2.3914 3.3339 9.0221 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221491.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:22 Heat of formation + Delta-G solvation = -149.260275 kcal Electronic energy + Delta-G solvation = -19064.353873 eV Core-core repulsion = 15695.863610 eV Total energy + Delta-G solvation = -3368.490263 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.060 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.42453 -39.90290 -38.18482 -36.39231 -35.94432 -34.01336 -31.78699 -31.09026 -27.73045 -24.95228 -24.42058 -22.96893 -22.62433 -19.80840 -19.48202 -18.97664 -17.67986 -17.45469 -16.78163 -16.48720 -16.01222 -15.87732 -15.42639 -14.77210 -13.89182 -13.66782 -13.39475 -13.30235 -13.19209 -12.75306 -12.39388 -12.16933 -11.94912 -11.94018 -11.56970 -11.34778 -11.15842 -11.01513 -10.58429 -10.36390 -10.29040 -9.86193 -9.54498 -9.10561 -8.99061 -8.87630 -8.31742 -6.58570 -4.18694 -0.03439 1.08989 1.58336 1.83663 2.58821 2.63343 3.02397 3.30718 3.35073 3.36724 3.54427 4.39694 4.43461 4.82030 4.84078 5.00977 5.15978 5.23373 5.28095 5.68634 5.76549 5.78581 5.99130 6.04610 6.14880 6.37739 6.43981 6.76079 6.95219 7.14325 7.47153 7.71982 8.34088 8.59142 8.87409 9.50933 10.84208 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.031543 B = 0.003446 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.462107 B = 8122.520831 C = 8415.803120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.034 3.966 3 H 0.057 0.943 4 C -0.603 4.603 5 H 0.076 0.924 6 C 0.035 3.965 7 N -0.897 5.897 8 Si 1.041 2.959 9 H -0.282 1.282 10 H -0.271 1.271 11 H -0.280 1.280 12 C 0.473 3.527 13 O -0.504 6.504 14 O -0.361 6.361 15 C 0.128 3.872 16 C -0.192 4.192 17 C -0.137 4.137 18 C -0.037 4.037 19 C -0.276 4.276 20 C 0.562 3.438 21 O -0.509 6.509 22 O -0.512 6.512 23 S 0.280 5.720 24 H 0.038 0.962 25 H 0.068 0.932 26 H 0.047 0.953 27 H 0.271 0.729 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.152 0.848 31 H 0.157 0.843 32 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.813 5.793 21.840 22.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 H 0.075 0.925 4 C -0.640 4.640 5 H 0.094 0.906 6 C -0.171 4.171 7 N -0.531 5.531 8 Si 0.868 3.132 9 H -0.207 1.207 10 H -0.197 1.197 11 H -0.207 1.207 12 C 0.317 3.683 13 O -0.390 6.390 14 O -0.280 6.280 15 C 0.052 3.948 16 C -0.312 4.312 17 C -0.168 4.168 18 C -0.072 4.072 19 C -0.394 4.394 20 C 0.406 3.594 21 O -0.399 6.399 22 O -0.325 6.325 23 S 0.551 5.449 24 H 0.057 0.943 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.170 0.830 31 H 0.175 0.825 32 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 0.141 7.121 20.297 21.510 hybrid contribution -0.836 -1.808 1.941 2.781 sum -0.695 5.313 22.238 22.875 Atomic orbital electron populations 1.22163 0.95962 1.00928 1.01249 1.19089 0.94475 0.97088 0.87973 0.92547 1.21963 1.41496 1.11072 0.89479 0.90588 1.25763 0.94518 1.05087 0.91714 1.70849 1.40916 1.10142 1.31153 0.84111 0.77288 0.75164 0.76625 1.20718 1.19717 1.20666 1.24881 0.76812 0.83363 0.83278 1.90540 1.35666 1.26281 1.86463 1.86693 1.70563 1.55789 1.14980 1.21094 0.98903 0.94845 0.79967 1.24226 1.01292 1.03874 1.01830 1.20028 0.97592 1.03438 0.95697 1.20749 0.98092 0.92226 0.96102 1.23521 1.05073 1.07859 1.02985 1.19286 0.79002 0.77774 0.83380 1.90950 1.36809 1.68307 1.43839 1.84601 1.46604 1.49732 1.51534 1.83320 1.19722 1.29454 1.12428 0.94337 0.91316 0.93340 0.91896 0.89233 0.90147 0.82990 0.82505 0.72289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.80 37.16 0.33 -2.70 16 2 C 0.03 0.78 2.32 -92.92 -0.22 0.57 16 3 H 0.06 1.26 6.80 -51.93 -0.35 0.91 16 4 C -0.60 -16.89 8.63 -34.45 -0.30 -17.19 16 5 H 0.08 2.39 7.02 -52.48 -0.37 2.02 16 6 C 0.04 0.99 5.29 -17.82 -0.09 0.89 16 7 N -0.90 -27.05 13.70 55.43 0.76 -26.29 16 8 Si 1.04 23.77 26.29 -169.99 -4.47 19.31 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.27 -5.57 5.76 56.52 0.33 -5.25 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 C 0.47 10.41 7.25 36.01 0.26 10.67 16 13 O -0.50 -12.38 15.22 -18.75 -0.29 -12.67 16 14 O -0.36 -6.52 10.13 -39.26 -0.40 -6.92 16 15 C 0.13 1.82 5.89 36.01 0.21 2.03 16 16 C -0.19 -2.29 5.92 -35.85 -0.21 -2.50 16 17 C -0.14 -1.45 9.99 -41.42 -0.41 -1.86 16 18 C -0.04 -0.38 10.01 -40.42 -0.40 -0.78 16 19 C -0.28 -2.97 6.45 -36.84 -0.24 -3.20 16 20 C 0.56 5.93 8.30 34.01 0.28 6.21 16 21 O -0.51 -6.55 17.63 -19.37 -0.34 -6.90 16 22 O -0.51 -3.89 13.29 -41.03 -0.55 -4.44 16 23 S 0.28 2.95 22.87 -107.50 -2.46 0.49 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 1.46 4.88 -51.93 -0.25 1.21 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.27 8.21 8.73 -40.82 -0.36 7.86 16 28 H 0.09 1.22 8.13 -51.93 -0.42 0.79 16 29 H 0.08 1.10 8.13 -51.93 -0.42 0.68 16 30 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 31 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.42 1.14 9.11 45.56 0.42 1.56 16 LS Contribution 303.14 15.07 4.57 4.57 Total: -1.00 -33.69 303.14 -6.29 -39.98 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -2.32 Total: 0.73 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -0.79 Total: -7.87 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.76 Total: -26.29 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -1.57 Total: -30.92 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -4.47 Total: 19.31 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -2.46 Total: 0.49 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.69 -6.29 -39.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221491.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.283 kcal (2) G-P(sol) polarization free energy of solvation -33.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds