Wall clock time and date at job start Tue Mar 31 2020 06:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47443 * 2 1 4 4 C 1.50703 * 109.46979 * 240.00665 * 2 1 3 5 5 H 1.08005 * 119.99551 * 275.00099 * 4 2 1 6 6 C 1.37868 * 120.00466 * 95.00077 * 4 2 1 7 7 N 1.31512 * 120.00194 * 184.91737 * 6 4 2 8 8 Si 1.86802 * 120.00167 * 4.91686 * 6 4 2 9 9 H 1.48496 * 109.47292 * 84.83080 * 8 6 4 10 10 H 1.48494 * 109.47356 * 204.83526 * 8 6 4 11 11 H 1.48500 * 109.46883 * 324.83313 * 8 6 4 12 12 N 1.46490 * 109.47380 * 120.00197 * 2 1 3 13 13 C 1.34776 * 120.00268 * 275.00307 * 12 2 1 14 14 O 1.21580 * 119.99798 * 359.97438 * 13 12 2 15 15 N 1.34780 * 120.00181 * 180.02562 * 13 12 2 16 16 C 1.38900 * 119.99919 * 179.97438 * 15 13 12 17 17 C 1.35881 * 124.62038 * 179.97438 * 16 15 13 18 18 C 1.37026 * 114.75341 * 179.97438 * 17 16 15 19 19 C 1.36941 * 113.47426 * 359.97438 * 18 17 16 20 20 C 1.41601 * 125.31999 * 179.97438 * 19 18 17 21 21 O 1.21706 * 120.00343 * 0.02562 * 20 19 18 22 22 O 1.34980 * 120.00119 * 180.02562 * 20 19 18 23 23 S 1.70613 * 124.62262 * 359.68929 * 16 15 13 24 24 H 1.09007 * 109.46978 * 295.03916 * 1 2 3 25 25 H 1.08995 * 109.47334 * 175.03157 * 1 2 3 26 26 H 1.09001 * 109.47232 * 55.02816 * 1 2 3 27 27 H 0.97002 * 119.99993 * 180.02562 * 7 6 4 28 28 H 0.97006 * 120.00104 * 94.99714 * 12 2 1 29 29 H 0.97001 * 119.99805 * 359.97438 * 15 13 12 30 30 H 1.08002 * 122.62450 * 359.93582 * 17 16 15 31 31 H 1.08002 * 123.26616 * 179.97438 * 18 17 16 32 32 H 0.96698 * 113.99884 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1354 -1.7854 -1.2292 6 6 2.3602 0.0122 -2.3581 7 7 2.7058 -0.6130 -3.4623 8 14 2.3136 1.8792 -2.3174 9 1 3.5992 2.3949 -1.7821 10 1 2.1058 2.3993 -3.6927 11 1 1.1987 2.3276 -1.4449 12 7 2.0183 -0.6906 1.1960 13 6 2.1471 -0.0183 2.3571 14 8 1.8583 1.1614 2.4116 15 7 2.5969 -0.6536 3.4574 16 6 2.7300 0.0394 4.6538 17 6 3.1726 -0.5063 5.8168 18 6 3.2251 0.3629 6.8749 19 6 2.8182 1.6318 6.5592 20 6 2.7719 2.7242 7.4589 21 8 3.1117 2.5731 8.6177 22 8 2.3507 3.9333 7.0313 23 16 2.3667 1.6934 4.8615 24 1 -0.3633 0.4350 0.9312 25 1 -0.3634 -1.0237 -0.0890 26 1 -0.3634 0.5890 -0.8421 27 1 2.9369 -0.1046 -4.2554 28 1 2.2490 -1.6318 1.1525 29 1 2.8276 -1.5948 3.4137 30 1 3.4599 -1.5440 5.9010 31 1 3.5553 0.0751 7.8621 32 1 2.3541 4.6158 7.7164 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222361.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:59 Heat of formation + Delta-G solvation = -90.710402 kcal Electronic energy + Delta-G solvation = -19358.805502 eV Core-core repulsion = 16025.146903 eV Total energy + Delta-G solvation = -3333.658599 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.31721 -40.18355 -37.82903 -36.04038 -35.42293 -34.44535 -32.56151 -30.29709 -28.87698 -25.52075 -25.18472 -22.64761 -21.97844 -20.37196 -19.78895 -18.99457 -18.18550 -17.76015 -16.69467 -16.05553 -15.77585 -15.53718 -15.45050 -15.00912 -14.42905 -13.77400 -13.55161 -13.24616 -13.14381 -12.65327 -12.57959 -12.29804 -11.77252 -11.61496 -11.29089 -11.09668 -10.90918 -10.80343 -10.76396 -10.62915 -10.00208 -9.73093 -9.37018 -8.87381 -8.63043 -8.47601 -7.92835 -6.37088 -4.42752 0.38689 1.33161 2.02683 2.12087 2.69104 3.01593 3.18343 3.26195 3.28811 3.31905 3.35405 4.20419 4.47506 4.99468 5.05249 5.27843 5.40098 5.64278 5.93586 6.12895 6.18547 6.30736 6.34780 6.36693 6.50634 6.60476 6.80677 7.08608 7.18940 7.32724 7.82473 7.98634 8.33976 8.59328 8.67311 9.23112 10.74074 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.031404 B = 0.003931 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.399965 B = 7121.001673 C = 7626.760862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.245 3.755 3 H 0.054 0.946 4 C -0.535 4.535 5 H 0.080 0.920 6 C 0.084 3.916 7 N -0.884 5.884 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.259 1.259 12 N -0.701 5.701 13 C 0.681 3.319 14 O -0.568 6.568 15 N -0.649 5.649 16 C 0.070 3.930 17 C -0.240 4.240 18 C 0.002 3.998 19 C -0.375 4.375 20 C 0.563 3.437 21 O -0.529 6.529 22 O -0.509 6.509 23 S 0.383 5.617 24 H 0.030 0.970 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.270 0.730 28 H 0.395 0.605 29 H 0.415 0.585 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.278 1.572 16.615 16.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.143 3.857 3 H 0.072 0.928 4 C -0.573 4.573 5 H 0.098 0.902 6 C -0.122 4.122 7 N -0.519 5.519 8 Si 0.700 3.300 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.183 1.183 12 N -0.352 5.352 13 C 0.381 3.619 14 O -0.448 6.448 15 N -0.295 5.295 16 C -0.152 4.152 17 C -0.272 4.272 18 C -0.032 4.032 19 C -0.494 4.494 20 C 0.410 3.590 21 O -0.422 6.422 22 O -0.319 6.319 23 S 0.645 5.355 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.229 0.771 29 H 0.252 0.748 30 H 0.163 0.837 31 H 0.166 0.834 32 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -0.973 3.400 15.261 15.665 hybrid contribution 0.890 -1.003 1.159 1.772 sum -0.083 2.397 16.420 16.594 Atomic orbital electron populations 1.22246 0.98207 1.00817 0.99554 1.19189 0.91043 0.94203 0.81281 0.92814 1.20959 1.45893 0.95685 0.94715 0.90202 1.24938 0.93332 0.98833 0.95095 1.69868 1.43866 1.36435 1.01737 0.86891 0.79931 0.85483 0.77653 1.19700 1.20990 1.18319 1.46102 1.67166 1.13892 1.08005 1.16421 0.79130 0.85635 0.80711 1.90791 1.57238 1.14102 1.82627 1.42295 1.66820 1.14023 1.06359 1.22434 1.02223 1.01041 0.89545 1.19811 1.14114 1.02493 0.90755 1.20250 0.93583 0.89808 0.99514 1.23004 1.25327 0.97528 1.03553 1.18048 0.73282 0.81861 0.85784 1.90922 1.47389 1.84661 1.19204 1.85087 1.80137 1.20985 1.45705 1.84748 1.56706 0.97538 0.96462 0.95058 0.93280 0.92522 0.91995 0.77087 0.74783 0.83689 0.83384 0.73503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.47 37.16 0.35 -2.67 16 2 C 0.24 5.35 2.22 -69.09 -0.15 5.19 16 3 H 0.05 1.29 4.73 -51.93 -0.25 1.04 16 4 C -0.53 -13.43 9.05 -34.44 -0.31 -13.74 16 5 H 0.08 2.11 8.06 -52.48 -0.42 1.69 16 6 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 7 N -0.88 -24.87 13.96 55.43 0.77 -24.09 16 8 Si 0.87 20.44 26.99 -169.99 -4.59 15.85 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.26 -5.92 6.82 56.52 0.39 -5.53 16 12 N -0.70 -12.52 5.07 -59.82 -0.30 -12.82 16 13 C 0.68 11.74 8.49 -86.92 -0.74 11.01 16 14 O -0.57 -11.47 13.43 5.30 0.07 -11.40 16 15 N -0.65 -8.47 5.40 -16.20 -0.09 -8.55 16 16 C 0.07 0.92 7.00 -15.19 -0.11 0.82 16 17 C -0.24 -2.67 10.20 -40.87 -0.42 -3.09 16 18 C 0.00 0.03 9.91 -40.49 -0.40 -0.37 16 19 C -0.38 -5.05 6.26 -38.77 -0.24 -5.29 16 20 C 0.56 7.55 8.08 32.01 0.26 7.81 16 21 O -0.53 -8.11 17.45 -19.42 -0.34 -8.45 16 22 O -0.51 -5.51 13.30 -41.26 -0.55 -6.06 16 23 S 0.38 5.52 19.75 -107.50 -2.12 3.39 16 24 H 0.03 0.60 8.14 -51.92 -0.42 0.17 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.40 5.98 8.61 -40.82 -0.35 5.62 16 29 H 0.42 3.91 8.81 -40.82 -0.36 3.55 16 30 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.15 1.55 8.01 -52.49 -0.42 1.13 16 32 H 0.41 2.41 8.98 45.56 0.41 2.82 16 LS Contribution 300.53 15.07 4.53 4.53 Total: -1.00 -31.89 300.53 -6.71 -38.60 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -2.23 Total: 7.21 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -1.86 Total: 1.79 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.38 Total: -45.47 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.82 Total: -25.91 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.59 Total: 15.85 kcal Atomic # 16 Polarization: 5.52 SS G_CDS: -2.12 Total: 3.39 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.89 -6.71 -38.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222361.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.110 kcal (2) G-P(sol) polarization free energy of solvation -31.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds