Wall clock time and date at job start Tue Mar 31 2020 06:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.50696 * 109.47087 * 120.00096 * 2 1 3 5 5 H 1.08003 * 120.00092 * 120.00284 * 4 2 1 6 6 C 1.37879 * 120.00258 * 299.99637 * 4 2 1 7 7 N 1.31513 * 120.00028 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 119.99858 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47354 * 89.99590 * 8 6 4 10 10 H 1.48501 * 109.46908 * 209.99697 * 8 6 4 11 11 H 1.48506 * 109.47061 * 329.99324 * 8 6 4 12 12 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 84.72116 * 12 2 1 14 14 O 1.21603 * 119.99956 * 0.28069 * 13 12 2 15 15 N 1.34777 * 120.00128 * 180.27942 * 13 12 2 16 16 C 1.39781 * 120.00170 * 180.02562 * 15 13 12 17 17 C 1.33451 * 124.74425 * 180.02562 * 16 15 13 18 18 C 1.44562 * 112.92863 * 180.02562 * 17 16 15 19 19 C 1.47006 * 123.45053 * 179.97438 * 18 17 16 20 20 O 1.21569 * 120.00232 * 359.97438 * 19 18 17 21 21 O 1.34812 * 119.99924 * 179.97438 * 19 18 17 22 22 C 1.35999 * 113.09917 * 359.97438 * 18 17 16 23 23 S 1.70417 * 110.95041 * 359.73166 * 22 18 17 24 24 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 25 25 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 26 26 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 27 27 H 0.97003 * 120.00277 * 180.02562 * 7 6 4 28 28 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 29 29 H 0.97000 * 119.99549 * 359.97438 * 15 13 12 30 30 H 1.07999 * 123.53605 * 359.97438 * 17 16 15 31 31 H 0.96698 * 116.99798 * 179.97438 * 21 19 18 32 32 H 1.07995 * 124.52313 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6249 1.2790 2.6542 9 1 -0.8027 0.8727 2.6998 10 1 0.9761 1.9950 3.9069 11 1 0.8473 2.1765 1.4921 12 7 2.0184 -0.6906 -1.1962 13 6 2.1417 -0.0196 -2.3585 14 8 1.8525 1.1603 -2.4130 15 7 2.5857 -0.6562 -3.4603 16 6 2.7142 0.0398 -4.6657 17 6 3.1425 -0.4950 -5.8109 18 6 3.1763 0.4564 -6.8988 19 6 3.6111 0.1146 -8.2609 20 8 3.9675 -1.0187 -8.5188 21 8 3.6147 1.0580 -9.2239 22 6 2.7648 1.6999 -6.5331 23 16 2.3274 1.7374 -4.8865 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.9027 -0.5285 4.4376 28 1 2.2490 -1.6318 -1.1527 29 1 2.8167 -1.5973 -3.4167 30 1 3.4341 -1.5298 -5.9138 31 1 3.9091 0.7858 -10.1039 32 1 2.7167 2.5491 -7.1987 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222520.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:01 Heat of formation + Delta-G solvation = -81.900241 kcal Electronic energy + Delta-G solvation = -19231.086913 eV Core-core repulsion = 15897.810352 eV Total energy + Delta-G solvation = -3333.276562 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.32547 -40.03809 -37.44040 -36.14072 -35.44394 -34.31971 -32.52734 -30.28698 -28.49847 -25.49630 -25.29265 -22.97034 -21.66784 -20.57325 -19.81614 -18.61350 -18.13693 -17.66844 -16.49814 -16.41582 -15.81614 -15.72850 -15.29933 -14.83076 -14.60012 -13.74039 -13.49768 -13.28592 -12.94773 -12.76632 -12.73982 -12.29160 -11.98184 -11.74042 -11.47109 -11.26130 -10.91517 -10.79528 -10.64524 -10.27928 -9.88179 -9.60410 -9.35168 -8.89565 -8.55057 -8.48198 -7.95162 -6.29267 -4.33252 0.68856 1.29525 1.68785 1.99531 2.61144 2.98217 3.13554 3.17591 3.30341 3.33293 3.44023 4.23778 4.55587 4.89685 5.05333 5.17790 5.29508 5.55182 5.72858 6.04898 6.18708 6.24018 6.28820 6.39182 6.43696 6.62948 6.83399 7.09350 7.22561 7.38119 7.76497 8.08611 8.37960 8.64642 8.75098 9.29961 10.82709 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.046543 B = 0.003423 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.450293 B = 8178.956651 C = 8578.285272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.253 3.747 3 H 0.052 0.948 4 C -0.539 4.539 5 H 0.081 0.919 6 C 0.080 3.920 7 N -0.890 5.890 8 Si 0.886 3.114 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.261 1.261 12 N -0.702 5.702 13 C 0.690 3.310 14 O -0.573 6.573 15 N -0.657 5.657 16 C 0.052 3.948 17 C -0.163 4.163 18 C -0.133 4.133 19 C 0.548 3.452 20 O -0.520 6.520 21 O -0.515 6.515 22 C -0.250 4.250 23 S 0.335 5.665 24 H 0.050 0.950 25 H 0.037 0.963 26 H 0.054 0.946 27 H 0.269 0.731 28 H 0.397 0.603 29 H 0.414 0.586 30 H 0.152 0.848 31 H 0.412 0.588 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.521 3.162 -19.889 20.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.150 3.850 3 H 0.070 0.930 4 C -0.577 4.577 5 H 0.099 0.901 6 C -0.124 4.124 7 N -0.526 5.526 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.185 1.185 12 N -0.352 5.352 13 C 0.390 3.610 14 O -0.453 6.453 15 N -0.305 5.305 16 C -0.163 4.163 17 C -0.195 4.195 18 C -0.150 4.150 19 C 0.391 3.609 20 O -0.410 6.410 21 O -0.326 6.326 22 C -0.389 4.389 23 S 0.597 5.403 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.231 0.769 29 H 0.251 0.749 30 H 0.169 0.831 31 H 0.270 0.730 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.344 5.116 -18.240 18.947 hybrid contribution 0.439 -1.682 -1.332 2.190 sum 0.094 3.433 -19.572 19.872 Atomic orbital electron populations 1.22493 0.99134 1.01038 0.99551 1.19112 0.90118 0.94484 0.81320 0.92984 1.20991 1.33670 1.14673 0.88401 0.90108 1.24814 0.95439 0.96747 0.95428 1.69857 1.44622 1.40024 0.98124 0.86873 0.80517 0.83480 0.77629 1.20217 1.22039 1.18531 1.45443 1.67851 1.13851 1.08080 1.16181 0.78875 0.85425 0.80560 1.90782 1.57437 1.14118 1.82921 1.42194 1.68522 1.13692 1.06053 1.21771 1.06561 0.99026 0.88904 1.20426 1.08870 1.00966 0.89201 1.18651 1.11386 0.93812 0.91165 1.20252 0.73765 0.81947 0.84937 1.90892 1.45423 1.21977 1.82684 1.84583 1.80851 1.43844 1.23350 1.26560 1.05007 1.01182 1.06162 1.84586 1.58616 1.00971 0.96112 0.93193 0.94358 0.92728 0.92126 0.76940 0.74920 0.83064 0.73018 0.80806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 8.96 37.16 0.33 -3.12 16 2 C 0.25 5.66 2.15 -69.09 -0.15 5.51 16 3 H 0.05 1.28 6.64 -51.93 -0.34 0.94 16 4 C -0.54 -13.92 9.31 -34.44 -0.32 -14.24 16 5 H 0.08 2.20 7.98 -52.48 -0.42 1.78 16 6 C 0.08 2.16 5.45 -17.82 -0.10 2.07 16 7 N -0.89 -25.61 13.96 55.43 0.77 -24.84 16 8 Si 0.89 20.89 24.37 -169.99 -4.14 16.75 16 9 H -0.28 -6.29 6.87 56.52 0.39 -5.91 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.26 -6.05 6.53 56.52 0.37 -5.68 16 12 N -0.70 -12.79 5.07 -59.81 -0.30 -13.09 16 13 C 0.69 12.02 8.49 -86.92 -0.74 11.28 16 14 O -0.57 -11.49 13.48 5.27 0.07 -11.42 16 15 N -0.66 -8.88 5.44 -15.35 -0.08 -8.96 16 16 C 0.05 0.71 7.11 -15.59 -0.11 0.60 16 17 C -0.16 -2.05 10.11 -38.77 -0.39 -2.44 16 18 C -0.13 -1.64 5.98 -104.66 -0.63 -2.26 16 19 C 0.55 6.53 8.30 34.28 0.28 6.82 16 20 O -0.52 -7.54 17.58 -19.32 -0.34 -7.88 16 21 O -0.51 -4.37 13.08 -40.80 -0.53 -4.91 16 22 C -0.25 -2.76 10.54 29.93 0.32 -2.44 16 23 S 0.33 4.33 20.06 -107.50 -2.16 2.17 16 24 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.40 6.20 8.55 -40.82 -0.35 5.86 16 29 H 0.41 4.25 8.81 -40.82 -0.36 3.89 16 30 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.41 1.56 9.11 45.56 0.42 1.98 16 32 H 0.17 1.51 8.01 -52.49 -0.42 1.09 16 LS Contribution 294.97 15.07 4.45 4.45 Total: -1.00 -32.52 294.97 -5.87 -38.39 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -2.10 Total: 7.57 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -1.50 Total: 1.77 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.39 Total: -46.89 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.80 Total: -24.21 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.14 Total: 16.75 kcal Atomic # 16 Polarization: 4.33 SS G_CDS: -2.16 Total: 2.17 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.52 -5.87 -38.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222520.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.515 kcal (2) G-P(sol) polarization free energy of solvation -32.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds