Wall clock time and date at job start Tue Mar 31 2020 06:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47254 * 2 1 4 4 C 1.50692 * 109.47163 * 239.99799 * 2 1 3 5 5 H 1.08000 * 120.00344 * 245.45596 * 4 2 1 6 6 C 1.37880 * 120.00129 * 65.45900 * 4 2 1 7 7 N 1.31516 * 119.99944 * 9.56161 * 6 4 2 8 8 Si 1.86800 * 120.00260 * 189.55823 * 6 4 2 9 9 H 1.48501 * 109.46945 * 84.99355 * 8 6 4 10 10 H 1.48497 * 109.47407 * 204.99265 * 8 6 4 11 11 H 1.48502 * 109.47211 * 324.99883 * 8 6 4 12 12 N 1.46506 * 109.47192 * 119.99563 * 2 1 3 13 13 C 1.34770 * 120.00337 * 274.99780 * 12 2 1 14 14 O 1.21600 * 119.99893 * 0.02562 * 13 12 2 15 15 N 1.34776 * 120.00467 * 180.02562 * 13 12 2 16 16 C 1.39783 * 120.00297 * 180.02562 * 15 13 12 17 17 C 1.33451 * 124.74038 * 179.97438 * 16 15 13 18 18 C 1.44563 * 112.92225 * 179.72848 * 17 16 15 19 19 C 1.47011 * 123.44632 * 180.02562 * 18 17 16 20 20 O 1.21566 * 120.00032 * 359.97438 * 19 18 17 21 21 O 1.34810 * 119.99795 * 180.02562 * 19 18 17 22 22 C 1.35993 * 113.10154 * 0.02562 * 18 17 16 23 23 S 1.70416 * 110.95432 * 359.97438 * 22 18 17 24 24 H 1.09001 * 109.47022 * 183.68500 * 1 2 3 25 25 H 1.09004 * 109.46881 * 303.68081 * 1 2 3 26 26 H 1.08993 * 109.47183 * 63.68336 * 1 2 3 27 27 H 0.97001 * 120.00002 * 180.02562 * 7 6 4 28 28 H 0.97003 * 119.99376 * 95.00353 * 12 2 1 29 29 H 0.97000 * 119.99227 * 359.97438 * 15 13 12 30 30 H 1.08003 * 123.53868 * 359.75270 * 17 16 15 31 31 H 0.96706 * 116.99403 * 180.02562 * 21 19 18 32 32 H 1.08008 * 124.52320 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5786 -1.6370 -1.1337 6 6 1.7945 -0.1774 -2.4796 7 7 1.2992 1.0356 -2.5936 8 14 2.1759 -1.1781 -4.0101 9 1 1.0239 -2.0611 -4.3239 10 1 2.4226 -0.2616 -5.1521 11 1 3.3844 -2.0074 -3.7709 12 7 2.0183 -0.6905 1.1963 13 6 2.1471 -0.0182 2.3571 14 8 1.8575 1.1616 2.4118 15 7 2.5969 -0.6533 3.4575 16 6 2.7299 0.0440 4.6617 17 6 3.1642 -0.4894 5.8053 18 6 3.2071 0.4644 6.8909 19 6 3.6496 0.1246 8.2510 20 8 4.0040 -1.0092 8.5094 21 8 3.6614 1.0700 9.2119 22 6 2.7962 1.7081 6.5250 23 16 2.3562 1.7449 4.8790 24 1 -0.3633 -1.0256 0.0661 25 1 -0.3633 0.5699 0.8552 26 1 -0.3633 0.4556 -0.9211 27 1 1.1316 1.4104 -3.4724 28 1 2.2491 -1.6317 1.1527 29 1 2.8275 -1.5945 3.4139 30 1 3.4535 -1.5247 5.9089 31 1 3.9608 0.7991 10.0906 32 1 2.7543 2.5589 7.1890 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222522.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:03 Heat of formation + Delta-G solvation = -91.753914 kcal Electronic energy + Delta-G solvation = -19151.896341 eV Core-core repulsion = 15818.192492 eV Total energy + Delta-G solvation = -3333.703849 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.25468 -39.89024 -37.33404 -36.09110 -35.20435 -34.18886 -32.50683 -29.67218 -28.15567 -25.43003 -25.31986 -22.84560 -21.57319 -20.50004 -19.68437 -18.51556 -18.08711 -17.54242 -16.41317 -16.19719 -15.71948 -15.46298 -15.15011 -14.77548 -14.38823 -13.66726 -13.53789 -13.05969 -12.67737 -12.67191 -12.49756 -11.98321 -11.69139 -11.22593 -11.20650 -11.11151 -10.88802 -10.70589 -10.57523 -10.45497 -10.29780 -9.60294 -9.23480 -8.63151 -8.43835 -8.33323 -7.82208 -6.23888 -4.30041 0.76187 1.38321 1.76270 2.08450 2.71745 3.04815 3.19951 3.21063 3.27483 3.29437 3.60062 4.25813 4.75275 4.97296 5.10518 5.23904 5.36775 5.62414 5.81048 6.12155 6.33071 6.49644 6.60157 6.76162 6.86504 6.97809 7.22118 7.50766 7.62324 7.76287 7.81254 7.94772 8.52105 8.67720 8.93470 9.36065 10.84556 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.046646 B = 0.003218 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.127633 B = 8700.279077 C = 9059.229142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.278 3.722 3 H 0.059 0.941 4 C -0.540 4.540 5 H 0.062 0.938 6 C 0.070 3.930 7 N -0.879 5.879 8 Si 0.900 3.100 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.709 5.709 13 C 0.687 3.313 14 O -0.570 6.570 15 N -0.659 5.659 16 C 0.054 3.946 17 C -0.166 4.166 18 C -0.134 4.134 19 C 0.548 3.452 20 O -0.521 6.521 21 O -0.515 6.515 22 C -0.252 4.252 23 S 0.338 5.662 24 H 0.029 0.971 25 H 0.021 0.979 26 H 0.075 0.925 27 H 0.266 0.734 28 H 0.390 0.610 29 H 0.412 0.588 30 H 0.151 0.849 31 H 0.411 0.589 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.531 -0.836 16.926 17.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.176 3.824 3 H 0.077 0.923 4 C -0.579 4.579 5 H 0.080 0.920 6 C -0.134 4.134 7 N -0.516 5.516 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.359 5.359 13 C 0.387 3.613 14 O -0.449 6.449 15 N -0.307 5.307 16 C -0.161 4.161 17 C -0.198 4.198 18 C -0.151 4.151 19 C 0.391 3.609 20 O -0.411 6.411 21 O -0.326 6.326 22 C -0.391 4.391 23 S 0.601 5.399 24 H 0.048 0.952 25 H 0.040 0.960 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.223 0.777 29 H 0.248 0.752 30 H 0.168 0.832 31 H 0.269 0.731 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.590 1.290 15.328 15.465 hybrid contribution 1.181 -2.884 0.735 3.201 sum 2.771 -1.593 16.063 16.378 Atomic orbital electron populations 1.22054 0.98656 0.98770 1.00758 1.18791 0.90564 0.94404 0.78625 0.92294 1.21126 1.37656 1.08840 0.90261 0.91978 1.24876 0.94843 0.94634 0.99055 1.69975 1.43465 1.13665 1.24448 0.86487 0.78761 0.79909 0.82103 1.20358 1.21087 1.19878 1.45843 1.67728 1.13520 1.08803 1.16246 0.78987 0.85536 0.80558 1.90785 1.57329 1.14111 1.82702 1.42286 1.68511 1.13597 1.06300 1.21795 1.06278 0.99025 0.89011 1.20402 1.09164 1.00888 0.89350 1.18642 1.11424 0.93851 0.91192 1.20272 0.73760 0.81927 0.84908 1.90885 1.45665 1.22003 1.82562 1.84589 1.80724 1.43771 1.23538 1.26579 1.05076 1.01158 1.06316 1.84653 1.58674 1.00596 0.95992 0.95166 0.95971 0.90616 0.92391 0.77733 0.75159 0.83188 0.73082 0.80862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.36 37.16 0.35 -2.97 16 2 C 0.28 6.64 2.42 -69.08 -0.17 6.47 16 3 H 0.06 1.64 7.52 -51.93 -0.39 1.25 16 4 C -0.54 -13.66 8.66 -34.44 -0.30 -13.96 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.83 5.17 -17.82 -0.09 1.73 16 7 N -0.88 -24.09 12.16 55.43 0.67 -23.42 16 8 Si 0.90 19.97 29.55 -169.99 -5.02 14.94 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 12 N -0.71 -13.60 5.07 -59.81 -0.30 -13.91 16 13 C 0.69 12.75 8.50 -86.92 -0.74 12.01 16 14 O -0.57 -12.28 13.48 5.28 0.07 -12.21 16 15 N -0.66 -9.46 5.44 -15.36 -0.08 -9.54 16 16 C 0.05 0.77 7.11 -15.59 -0.11 0.66 16 17 C -0.17 -2.19 10.11 -38.76 -0.39 -2.59 16 18 C -0.13 -1.73 5.98 -104.66 -0.63 -2.35 16 19 C 0.55 6.80 8.30 34.29 0.28 7.08 16 20 O -0.52 -7.77 17.58 -19.32 -0.34 -8.11 16 21 O -0.51 -4.60 13.08 -40.79 -0.53 -5.13 16 22 C -0.25 -2.95 10.54 29.93 0.32 -2.63 16 23 S 0.34 4.67 20.06 -107.50 -2.16 2.51 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.08 1.90 6.83 -51.93 -0.35 1.55 16 27 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.39 6.30 8.54 -40.82 -0.35 5.95 16 29 H 0.41 4.51 8.81 -40.82 -0.36 4.15 16 30 H 0.15 1.81 8.06 -52.48 -0.42 1.39 16 31 H 0.41 1.72 9.11 45.56 0.42 2.14 16 32 H 0.17 1.62 8.01 -52.48 -0.42 1.20 16 LS Contribution 303.10 15.07 4.57 4.57 Total: -1.00 -31.60 303.10 -6.87 -38.47 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -2.27 Total: 8.36 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -1.48 Total: 3.46 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: 0.29 Total: -46.86 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.80 Total: -25.45 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 4.67 SS G_CDS: -2.16 Total: 2.51 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.60 -6.87 -38.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222522.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.282 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds