Wall clock time and date at job start Tue Mar 31 2020 05:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86802 * 120.00303 * 2 1 4 4 H 1.48496 * 109.47338 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46924 * 300.00191 * 3 2 1 6 6 H 1.48503 * 109.46989 * 59.99956 * 3 2 1 7 7 C 1.38805 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00262 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99789 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99888 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47188 * 180.02562 * 10 9 7 12 12 N 1.31129 * 126.55175 * 89.70862 * 11 10 9 13 13 C 1.34495 * 105.60913 * 179.91602 * 12 11 10 14 14 C 1.50705 * 126.28546 * 180.12685 * 13 12 11 15 15 C 1.50703 * 112.84956 * 49.04539 * 14 13 12 16 16 O 1.20822 * 120.00043 * 129.66463 * 15 14 13 17 17 O 1.34232 * 119.99722 * 309.66881 * 15 14 13 18 18 C 1.53783 * 113.61419 * 277.74098 * 14 13 12 19 19 C 1.53780 * 87.07799 * 220.01576 * 18 14 13 20 20 C 1.53774 * 87.08417 * 25.43336 * 19 18 14 21 21 N 1.29943 * 107.42921 * 0.35262 * 13 12 11 22 22 O 1.21299 * 110.25099 * 359.77768 * 21 13 12 23 23 H 0.96996 * 119.99897 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47439 * 60.00206 * 10 9 7 25 25 H 1.09004 * 109.47352 * 299.99636 * 10 9 7 26 26 H 0.96703 * 116.99815 * 179.97438 * 17 15 14 27 27 H 1.09001 * 113.61503 * 334.56681 * 18 14 13 28 28 H 1.08999 * 113.61428 * 105.47150 * 18 14 13 29 29 H 1.09001 * 113.61505 * 270.87834 * 19 18 14 30 30 H 1.09009 * 113.61151 * 139.98279 * 19 18 14 31 31 H 1.09001 * 113.61723 * 220.01816 * 20 19 18 32 32 H 1.08999 * 113.61853 * 89.11527 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7279 0.0019 10 6 2.5158 -3.8914 0.0029 11 6 1.9873 -5.3028 0.0036 12 7 1.7087 -6.0328 -1.0495 13 6 1.2721 -7.2104 -0.5682 14 6 0.8274 -8.3973 -1.3835 15 6 1.8069 -8.7617 -2.4692 16 8 2.1844 -9.9037 -2.5840 17 8 2.2601 -7.8174 -3.3088 18 6 -0.6276 -8.2990 -1.8716 19 6 -0.7525 -9.7986 -1.5545 20 6 0.3779 -9.5962 -0.5317 21 7 1.2997 -7.1351 0.7287 22 8 1.7075 -6.0473 1.0776 23 1 -0.4850 0.8400 -0.0004 24 1 3.1244 -3.7306 0.8928 25 1 3.1244 -3.7322 -0.8872 26 1 2.8873 -8.0990 -3.9888 27 1 -1.2565 -7.6663 -1.2451 28 1 -0.7175 -8.0683 -2.9331 29 1 -0.4771 -10.4454 -2.3874 30 1 -1.7063 -10.0714 -1.1028 31 1 1.0998 -10.4126 -0.5115 32 1 0.0239 -9.3182 0.4610 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594611416.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:41 Heat of formation + Delta-G solvation = -1.328998 kcal Electronic energy + Delta-G solvation = -19637.009019 eV Core-core repulsion = 16307.226288 eV Total energy + Delta-G solvation = -3329.782730 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.36440 -41.13122 -38.41188 -36.24649 -35.37372 -33.07269 -32.57587 -28.63194 -28.02672 -26.07429 -25.63897 -24.01508 -22.55114 -21.81501 -19.55871 -18.40997 -17.90994 -17.85552 -17.37365 -16.36788 -16.11666 -15.10479 -14.93311 -14.77504 -14.57658 -14.19656 -13.40276 -13.13801 -12.91966 -12.79454 -12.74952 -11.98957 -11.70115 -11.64987 -11.34837 -11.23538 -11.15405 -11.11956 -11.03823 -10.84331 -10.67985 -10.58365 -10.20762 -9.45977 -9.21270 -8.57134 -6.75950 -6.38100 -4.12569 1.26376 1.83888 2.25270 2.80296 3.00104 3.15042 3.19127 3.24523 3.38740 3.56410 3.72597 4.05033 4.15044 4.40124 4.52463 4.81295 4.99786 5.09141 5.16142 5.30933 5.42472 5.45435 5.61128 5.62088 5.65638 5.69601 5.83918 6.01653 6.09601 6.19873 6.29508 7.46902 7.70797 8.21105 8.36318 9.08269 10.69980 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.033094 B = 0.003686 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.875135 B = 7594.852936 C = 7735.891613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.924 3.076 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.526 4.526 8 H 0.081 0.919 9 S -0.081 6.081 10 C -0.043 4.043 11 C 0.227 3.773 12 N -0.460 5.460 13 C 0.173 3.827 14 C 0.006 3.994 15 C 0.516 3.484 16 O -0.509 6.509 17 O -0.486 6.486 18 C -0.107 4.107 19 C -0.142 4.142 20 C -0.108 4.108 21 N -0.380 5.380 22 O 0.082 5.918 23 H 0.270 0.730 24 H 0.103 0.897 25 H 0.112 0.888 26 H 0.410 0.590 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.497 -15.527 -3.320 15.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.750 3.250 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.674 4.674 8 H 0.099 0.901 9 S 0.145 5.855 10 C -0.192 4.192 11 C 0.006 3.994 12 N -0.193 5.193 13 C -0.100 4.100 14 C 0.003 3.997 15 C 0.357 3.643 16 O -0.397 6.397 17 O -0.295 6.295 18 C -0.146 4.146 19 C -0.179 4.179 20 C -0.146 4.146 21 N -0.088 5.088 22 O 0.022 5.978 23 H 0.080 0.920 24 H 0.121 0.879 25 H 0.130 0.870 26 H 0.268 0.732 27 H 0.121 0.879 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.218 -16.542 -2.967 16.807 hybrid contribution 2.342 1.412 -0.404 2.764 sum 2.123 -15.130 -3.370 15.645 Atomic orbital electron populations 1.70004 1.06032 1.27745 1.46421 1.25025 0.95113 0.99234 0.94110 0.86019 0.79630 0.81318 0.78003 1.19380 1.20450 1.20443 1.22753 0.94913 0.90022 1.59705 0.90094 1.85186 1.05135 0.98250 1.96958 1.21997 1.04449 0.85715 1.07009 1.28323 0.94125 0.96949 0.79968 1.72013 1.17729 1.01541 1.28052 1.24764 1.01838 0.95048 0.88380 1.19831 0.94897 0.92233 0.92701 1.22070 0.78869 0.82615 0.80790 1.90710 1.56205 1.21503 1.71285 1.84697 1.59447 1.41954 1.43439 1.22990 0.90414 0.97974 1.03212 1.22949 0.99598 0.95853 0.99519 1.22975 0.98390 0.94796 0.98455 1.74526 1.18382 1.00986 1.14900 1.85307 1.58841 1.17837 1.35827 0.91996 0.87882 0.87009 0.73209 0.87871 0.89505 0.89275 0.89743 0.89106 0.87583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.62 13.22 55.49 0.73 -23.89 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 3 Si 0.92 20.31 29.55 -169.99 -5.02 15.28 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.53 -13.91 9.50 30.94 0.29 -13.62 16 8 H 0.08 2.02 7.80 -52.49 -0.41 1.61 16 9 S -0.08 -1.98 21.42 -107.50 -2.30 -4.29 16 10 C -0.04 -0.81 6.30 36.01 0.23 -0.58 16 11 C 0.23 4.14 7.77 -13.06 -0.10 4.04 16 12 N -0.46 -8.39 11.04 -9.87 -0.11 -8.50 16 13 C 0.17 2.84 6.88 -156.37 -1.08 1.77 16 14 C 0.01 0.08 1.29 -156.00 -0.20 -0.12 16 15 C 0.52 6.83 7.10 36.01 0.26 7.09 16 16 O -0.51 -7.28 16.59 -18.75 -0.31 -7.59 16 17 O -0.49 -5.80 12.84 -39.26 -0.50 -6.31 16 18 C -0.11 -1.19 7.21 -25.92 -0.19 -1.37 16 19 C -0.14 -1.30 7.75 -25.92 -0.20 -1.50 16 20 C -0.11 -1.21 6.88 -25.92 -0.18 -1.38 16 21 N -0.38 -6.47 11.39 30.90 0.35 -6.11 16 22 O 0.08 1.45 11.31 18.09 0.20 1.66 16 23 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 24 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 25 H 0.11 2.01 8.14 -51.91 -0.42 1.58 16 26 H 0.41 2.80 9.10 45.56 0.41 3.21 16 27 H 0.10 1.17 8.09 -51.93 -0.42 0.75 16 28 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 31 H 0.09 1.02 7.42 -51.93 -0.39 0.63 16 32 H 0.11 1.18 7.64 -51.93 -0.40 0.78 16 LS Contribution 303.88 15.07 4.58 4.58 Total: -1.00 -31.76 303.88 -6.09 -37.85 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -2.44 Total: 1.10 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -1.26 Total: -3.77 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.98 Total: -38.50 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -0.61 Total: -12.25 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: -1.98 SS G_CDS: -2.30 Total: -4.29 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.76 -6.09 -37.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611416.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.519 kcal (2) G-P(sol) polarization free energy of solvation -31.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds