Wall clock time and date at job start Tue Mar 31 2020 05:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47058 * 90.00047 * 9 7 5 11 11 H 1.48493 * 109.47227 * 209.99949 * 9 7 5 12 12 H 1.48503 * 109.47109 * 330.00183 * 9 7 5 13 13 O 1.45200 * 109.46937 * 64.99847 * 3 2 1 14 14 C 1.34821 * 117.00664 * 270.00191 * 13 3 2 15 15 O 1.21543 * 119.99416 * 0.02562 * 14 13 3 16 16 C 1.47039 * 120.00447 * 179.97438 * 14 13 3 17 17 C 1.36703 * 125.16249 * 179.72238 * 16 14 13 18 18 C 1.36744 * 114.74317 * 179.79218 * 17 16 14 19 19 C 1.36700 * 114.74112 * 0.50100 * 18 17 16 20 20 C 1.47046 * 125.16169 * 179.76605 * 19 18 17 21 21 O 1.21536 * 120.00099 * 359.97438 * 20 19 18 22 22 O 1.34822 * 120.00148 * 179.97438 * 20 19 18 23 23 S 1.75830 * 109.67867 * 359.72878 * 19 18 17 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 30 30 H 1.07997 * 122.62568 * 359.97438 * 17 16 14 31 31 H 1.08006 * 122.62917 * 180.22754 * 18 17 16 32 32 H 0.96699 * 116.99795 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5539 -0.3519 -0.7599 11 1 6.3835 0.9216 -2.8165 12 1 6.5575 2.0721 -0.6889 13 8 1.6559 2.0916 1.2407 14 6 0.4675 2.7282 1.2562 15 8 -0.2286 2.7398 0.2599 16 6 0.0131 3.4074 2.4785 17 6 -1.1659 4.0869 2.6097 18 6 -1.3765 4.6345 3.8448 19 6 -0.3690 4.4224 4.7441 20 6 -0.3549 4.9112 6.1309 21 8 -1.2906 5.5597 6.5562 22 8 0.6960 4.6398 6.9306 23 16 0.9070 3.4756 3.9912 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8292 -0.0609 -2.9500 30 1 -1.8766 4.1812 1.8020 31 1 -2.2671 5.1946 4.0894 32 1 0.6601 4.9826 7.8341 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030827.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:50 Heat of formation + Delta-G solvation = -148.704682 kcal Electronic energy + Delta-G solvation = -19504.847156 eV Core-core repulsion = 16136.380986 eV Total energy + Delta-G solvation = -3368.466171 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.060 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.36820 -39.74625 -37.64255 -36.30942 -35.76619 -33.60700 -31.49105 -30.47258 -27.55077 -26.32865 -23.49491 -22.78144 -21.82907 -19.94478 -19.09336 -18.89098 -17.95411 -16.80772 -16.65285 -15.97374 -15.82369 -15.48115 -15.41464 -14.58968 -13.93820 -13.38534 -13.30651 -13.01162 -12.86828 -12.46482 -12.19155 -11.87171 -11.60109 -11.47930 -11.27920 -11.18861 -11.03078 -10.90843 -10.72159 -10.35564 -10.01724 -9.81685 -9.48837 -9.12687 -8.91396 -8.78454 -8.52401 -6.24979 -4.32657 -0.16638 1.17585 1.65818 1.75823 2.61023 2.65478 3.21110 3.23358 3.26352 3.28585 3.39424 4.27367 4.87247 4.96220 5.07177 5.13208 5.36044 5.72288 5.92537 6.03451 6.10435 6.16257 6.22909 6.37446 6.76121 6.86460 7.07436 7.10188 7.52408 7.52880 7.64216 7.80857 8.05777 8.42193 8.76802 9.32707 10.81813 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.025297 B = 0.004206 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.592019 B = 6656.218787 C = 7395.838317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.223 3.777 4 H 0.050 0.950 5 C -0.524 4.524 6 H 0.070 0.930 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.912 3.088 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.349 6.349 14 C 0.520 3.480 15 O -0.492 6.492 16 C -0.197 4.197 17 C -0.088 4.088 18 C -0.054 4.054 19 C -0.261 4.261 20 C 0.562 3.438 21 O -0.506 6.506 22 O -0.510 6.510 23 S 0.297 5.703 24 H 0.031 0.969 25 H 0.035 0.965 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.111 0.889 29 H 0.267 0.733 30 H 0.163 0.837 31 H 0.159 0.841 32 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.025 5.996 13.555 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.562 4.562 6 H 0.088 0.912 7 C -0.138 4.138 8 N -0.524 5.524 9 Si 0.739 3.261 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.265 6.265 14 C 0.362 3.638 15 O -0.383 6.383 16 C -0.318 4.318 17 C -0.120 4.120 18 C -0.089 4.089 19 C -0.380 4.380 20 C 0.405 3.595 21 O -0.396 6.396 22 O -0.322 6.322 23 S 0.569 5.431 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.129 0.871 29 H 0.077 0.923 30 H 0.181 0.819 31 H 0.177 0.823 32 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -4.926 5.293 13.268 15.111 hybrid contribution -0.564 0.675 -0.161 0.894 sum -5.491 5.968 13.108 15.414 Atomic orbital electron populations 1.21877 0.98320 0.99250 1.00735 1.22047 0.92689 0.99145 1.03611 1.20809 0.95262 0.88810 0.78003 0.93179 1.21016 0.89383 1.39341 1.06434 0.91196 1.24874 0.99336 0.94635 0.94954 1.69879 1.35484 1.37599 1.09472 0.86265 0.83701 0.78744 0.77410 1.20289 1.20928 1.19575 1.86569 1.32813 1.62305 1.44845 1.19612 0.81596 0.77000 0.85595 1.90837 1.55467 1.58112 1.33880 1.24580 1.00868 1.07638 0.98741 1.20522 0.96429 0.96903 0.98167 1.20475 0.98806 0.98662 0.90917 1.23885 1.03970 1.13835 0.96355 1.19402 0.79402 0.76143 0.84580 1.90923 1.36072 1.37575 1.75016 1.84595 1.44570 1.74118 1.28915 1.84713 1.15481 1.43492 0.99460 0.95030 0.94591 0.92703 0.93786 0.87093 0.92271 0.81931 0.82307 0.72196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.56 37.16 0.32 -2.75 16 2 C -0.14 -3.29 5.49 -26.73 -0.15 -3.44 16 3 C 0.22 5.72 2.25 -27.89 -0.06 5.66 16 4 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 5 C -0.52 -14.18 8.90 -34.44 -0.31 -14.48 16 6 H 0.07 1.87 7.81 -52.48 -0.41 1.45 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.34 11.29 55.43 0.63 -23.71 16 9 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 O -0.35 -7.95 9.65 -40.82 -0.39 -8.35 16 14 C 0.52 10.56 6.40 34.30 0.22 10.78 16 15 O -0.49 -10.93 14.00 -19.30 -0.27 -11.20 16 16 C -0.20 -3.12 6.46 -36.57 -0.24 -3.36 16 17 C -0.09 -1.14 9.88 -40.68 -0.40 -1.55 16 18 C -0.05 -0.62 9.88 -40.68 -0.40 -1.02 16 19 C -0.26 -3.14 6.46 -36.57 -0.24 -3.37 16 20 C 0.56 6.34 8.32 34.30 0.29 6.63 16 21 O -0.51 -6.74 17.60 -19.29 -0.34 -7.08 16 22 O -0.51 -4.29 13.28 -40.83 -0.54 -4.83 16 23 S 0.30 3.96 22.95 -107.50 -2.47 1.49 16 24 H 0.03 0.64 6.06 -51.93 -0.31 0.33 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 1.21 7.79 -51.93 -0.40 0.81 16 27 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.11 2.89 5.95 -51.93 -0.31 2.58 16 29 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.16 1.92 8.04 -52.49 -0.42 1.49 16 31 H 0.16 1.49 8.04 -52.48 -0.42 1.06 16 32 H 0.42 1.40 9.11 45.56 0.42 1.81 16 LS Contribution 302.09 15.07 4.55 4.55 Total: -1.00 -31.01 302.09 -7.14 -38.14 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -2.22 Total: 0.78 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -1.06 Total: -5.27 kcal Atomic # 7 Polarization: -24.34 SS G_CDS: 0.63 Total: -23.71 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -1.55 Total: -31.46 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -2.47 Total: 1.49 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.01 -7.14 -38.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030827.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.561 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds