Wall clock time and date at job start Tue Mar 31 2020 05:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 O 1.45204 * 109.47283 * 295.00220 * 3 2 1 14 14 C 1.34817 * 117.00085 * 89.99471 * 13 3 2 15 15 O 1.21552 * 119.99835 * 0.02562 * 14 13 3 16 16 C 1.47038 * 119.99934 * 180.02562 * 14 13 3 17 17 C 1.36709 * 125.16036 * 180.02562 * 16 14 13 18 18 C 1.36745 * 114.74021 * 180.02562 * 17 16 14 19 19 C 1.36693 * 114.74413 * 0.02562 * 18 17 16 20 20 C 1.47049 * 125.16438 * 180.02562 * 19 18 17 21 21 O 1.21550 * 119.99389 * 359.97438 * 20 19 18 22 22 O 1.34810 * 120.00746 * 179.97438 * 20 19 18 23 23 S 1.75836 * 125.16240 * 359.69873 * 16 14 13 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 30 30 H 1.08002 * 122.62908 * 359.97438 * 17 16 14 31 31 H 1.07997 * 122.62394 * 179.97438 * 18 17 16 32 32 H 0.96698 * 117.00327 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 8 1.6559 2.0917 -1.2407 14 6 0.4676 2.7282 -1.2560 15 8 -0.2281 2.7405 -0.2594 16 6 0.0132 3.4075 -2.4783 17 6 -1.1680 4.0829 -2.6109 18 6 -1.3764 4.6348 -3.8446 19 6 -0.3699 4.4209 -4.7444 20 6 -0.3557 4.9097 -6.1312 21 8 -1.2911 5.5594 -6.5561 22 8 0.6945 4.6374 -6.9313 23 16 0.9102 3.4814 -3.9889 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8293 -0.0605 2.9503 30 1 -1.8811 4.1727 -1.8047 31 1 -2.2667 5.1950 -4.0889 32 1 0.6583 4.9797 -7.8350 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030828.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:52 Heat of formation + Delta-G solvation = -148.712052 kcal Electronic energy + Delta-G solvation = -19504.744719 eV Core-core repulsion = 16136.278228 eV Total energy + Delta-G solvation = -3368.466490 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.060 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.36723 -39.74544 -37.64275 -36.30883 -35.76527 -33.60685 -31.49079 -30.47239 -27.55056 -26.32875 -23.49515 -22.78198 -21.82902 -19.94478 -19.09360 -18.89077 -17.95416 -16.80786 -16.65258 -15.97310 -15.82316 -15.47962 -15.41727 -14.58880 -13.93800 -13.38502 -13.30366 -13.01558 -12.86818 -12.46335 -12.19195 -11.87107 -11.60106 -11.47927 -11.28425 -11.19327 -11.00053 -10.90827 -10.74770 -10.35189 -10.01709 -9.80991 -9.49622 -9.12718 -8.90851 -8.78458 -8.52557 -6.25000 -4.32665 -0.16655 1.17586 1.65786 1.75789 2.61024 2.65425 3.20774 3.23628 3.26349 3.28763 3.39277 4.27365 4.87249 4.96216 5.07210 5.13207 5.36011 5.72279 5.92508 6.03448 6.10420 6.16206 6.22956 6.37441 6.76099 6.86463 7.07462 7.10167 7.52384 7.52892 7.64205 7.80839 8.05762 8.42174 8.76799 9.32701 10.81797 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.025299 B = 0.004206 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.512601 B = 6656.058235 C = 7396.024609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.223 3.777 4 H 0.050 0.950 5 C -0.524 4.524 6 H 0.070 0.930 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.912 3.088 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.271 1.271 13 O -0.349 6.349 14 C 0.520 3.480 15 O -0.492 6.492 16 C -0.197 4.197 17 C -0.088 4.088 18 C -0.054 4.054 19 C -0.261 4.261 20 C 0.562 3.438 21 O -0.506 6.506 22 O -0.510 6.510 23 S 0.297 5.703 24 H 0.031 0.969 25 H 0.054 0.946 26 H 0.035 0.965 27 H 0.111 0.889 28 H 0.043 0.957 29 H 0.267 0.733 30 H 0.163 0.837 31 H 0.159 0.841 32 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.022 5.996 -13.557 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.562 4.562 6 H 0.088 0.912 7 C -0.138 4.138 8 N -0.524 5.524 9 Si 0.739 3.261 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.195 1.195 13 O -0.265 6.265 14 C 0.362 3.638 15 O -0.383 6.383 16 C -0.318 4.318 17 C -0.120 4.120 18 C -0.089 4.089 19 C -0.380 4.380 20 C 0.405 3.595 21 O -0.396 6.396 22 O -0.322 6.322 23 S 0.568 5.432 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.129 0.871 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.181 0.819 31 H 0.177 0.823 32 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -4.918 5.293 -13.271 15.111 hybrid contribution -0.569 0.686 0.169 0.907 sum -5.487 5.979 -13.103 15.413 Atomic orbital electron populations 1.21877 0.98321 0.99251 1.00733 1.22043 0.92686 0.99140 1.03613 1.20809 0.95264 0.88816 0.78001 0.93185 1.21015 0.89384 1.39318 1.06454 0.91198 1.24876 0.99339 0.94606 0.94983 1.69883 1.35493 1.37638 1.09423 0.86265 0.83686 0.77756 0.78419 1.20353 1.20897 1.19531 1.86571 1.32802 1.62304 1.44849 1.19615 0.81597 0.76997 0.85599 1.90840 1.55483 1.58122 1.33857 1.24581 1.00793 1.07668 0.98784 1.20525 0.96444 0.96867 0.98186 1.20472 0.98854 0.98619 0.90910 1.23885 1.03960 1.13876 0.96313 1.19404 0.79395 0.76145 0.84587 1.90927 1.36082 1.37543 1.75048 1.84591 1.44602 1.74114 1.28882 1.84717 1.15106 1.43871 0.99461 0.95037 0.92699 0.94588 0.87091 0.93780 0.92274 0.81929 0.82309 0.72191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.56 37.16 0.32 -2.75 16 2 C -0.14 -3.29 5.49 -26.74 -0.15 -3.43 16 3 C 0.22 5.72 2.25 -27.89 -0.06 5.66 16 4 H 0.05 1.42 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -14.18 8.90 -34.44 -0.31 -14.48 16 6 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.34 11.29 55.43 0.63 -23.71 16 9 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 O -0.35 -7.95 9.65 -40.81 -0.39 -8.35 16 14 C 0.52 10.56 6.40 34.30 0.22 10.78 16 15 O -0.49 -10.93 14.01 -19.30 -0.27 -11.20 16 16 C -0.20 -3.12 6.46 -36.57 -0.24 -3.36 16 17 C -0.09 -1.14 9.88 -40.67 -0.40 -1.55 16 18 C -0.05 -0.62 9.88 -40.68 -0.40 -1.02 16 19 C -0.26 -3.14 6.46 -36.57 -0.24 -3.37 16 20 C 0.56 6.34 8.32 34.30 0.29 6.63 16 21 O -0.51 -6.74 17.60 -19.30 -0.34 -7.08 16 22 O -0.51 -4.29 13.28 -40.79 -0.54 -4.83 16 23 S 0.30 3.96 22.95 -107.50 -2.47 1.49 16 24 H 0.03 0.64 6.06 -51.93 -0.31 0.33 16 25 H 0.05 1.21 7.79 -51.93 -0.40 0.81 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.11 2.89 5.95 -51.93 -0.31 2.58 16 28 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.16 1.92 8.04 -52.49 -0.42 1.49 16 31 H 0.16 1.49 8.04 -52.49 -0.42 1.06 16 32 H 0.42 1.40 9.11 45.56 0.42 1.81 16 LS Contribution 302.09 15.07 4.55 4.55 Total: -1.00 -31.01 302.09 -7.14 -38.15 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -2.22 Total: 0.78 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -1.06 Total: -5.27 kcal Atomic # 7 Polarization: -24.34 SS G_CDS: 0.63 Total: -23.71 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -1.55 Total: -31.46 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -2.47 Total: 1.49 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.01 -7.14 -38.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030828.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.565 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds