Wall clock time and date at job start Tue Mar 31 2020 05:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.28651 * 124.70878 * 2 1 4 4 C 1.33574 * 115.76874 * 180.02562 * 3 2 1 5 5 C 1.47172 * 123.15479 * 180.02562 * 4 3 2 6 6 O 1.21659 * 120.00309 * 174.61224 * 5 4 3 7 7 N 1.34776 * 119.99783 * 354.60423 * 5 4 3 8 8 C 1.36952 * 120.00044 * 5.61986 * 7 5 4 9 9 H 1.07993 * 120.00129 * 316.04308 * 8 7 5 10 10 C 1.38981 * 119.99672 * 136.04062 * 8 7 5 11 11 N 1.31417 * 120.00428 * 348.39625 * 10 8 7 12 12 Si 1.86800 * 119.99972 * 168.40288 * 10 8 7 13 13 H 1.48504 * 109.47467 * 59.99395 * 12 10 8 14 14 H 1.48491 * 109.47486 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.46985 * 299.99764 * 12 10 8 16 16 C 1.46507 * 120.00179 * 185.61726 * 7 5 4 17 17 C 1.50703 * 109.46995 * 83.64830 * 16 7 5 18 18 O 1.20820 * 119.99729 * 0.02562 * 17 16 7 19 19 O 1.34225 * 119.99986 * 180.02562 * 17 16 7 20 20 C 1.35298 * 113.69423 * 359.97438 * 4 3 2 21 21 C 1.50701 * 125.59042 * 180.02562 * 20 4 3 22 22 S 1.70768 * 124.71065 * 180.29731 * 2 1 3 23 23 H 1.08994 * 109.47011 * 90.00322 * 1 2 3 24 24 H 1.08994 * 109.47061 * 210.00468 * 1 2 3 25 25 H 1.09004 * 109.46843 * 330.00363 * 1 2 3 26 26 H 0.96996 * 120.00033 * 179.97438 * 11 10 8 27 27 H 1.09000 * 109.47300 * 203.65222 * 16 7 5 28 28 H 1.09000 * 109.46672 * 323.65124 * 16 7 5 29 29 H 0.96693 * 117.00062 * 180.02562 * 19 17 16 30 30 H 1.08998 * 109.47437 * 89.99692 * 21 20 4 31 31 H 1.08998 * 109.47020 * 329.99812 * 21 20 4 32 32 H 1.09000 * 109.47011 * 209.99717 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2395 1.0576 0.0000 4 6 3.5591 0.8500 -0.0005 5 6 4.5456 1.9421 -0.0001 6 8 5.7318 1.6903 0.0983 7 7 4.1350 3.2212 -0.1088 8 6 2.7971 3.5136 -0.1038 9 1 2.1112 2.9143 -0.6839 10 6 2.3222 4.5818 0.6478 11 7 3.1054 5.1672 1.5258 12 14 0.5704 5.1852 0.4103 13 1 -0.3782 4.0835 0.7132 14 1 0.3114 6.3261 1.3249 15 1 0.3848 5.6255 -0.9958 16 6 5.1199 4.2987 -0.2323 17 6 5.5403 4.4324 -1.6733 18 8 5.0655 3.7027 -2.5112 19 8 6.4420 5.3619 -2.0260 20 6 3.9036 -0.4584 -0.0004 21 6 5.3121 -0.9944 -0.0004 22 16 2.4794 -1.4038 -0.0073 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8901 0.5138 26 1 2.7740 5.9129 2.0501 27 1 4.6775 5.2358 0.1056 28 1 5.9911 4.0666 0.3803 29 1 6.6800 5.4099 -2.9619 30 1 5.6517 -1.1235 1.0272 31 1 5.9682 -0.2919 -0.5143 32 1 5.3351 -1.9555 -0.5141 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600683810.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:14 Heat of formation + Delta-G solvation = -68.222679 kcal Electronic energy + Delta-G solvation = -20763.552962 eV Core-core repulsion = 17430.869504 eV Total energy + Delta-G solvation = -3332.683458 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.95632 -39.27315 -37.57106 -35.46025 -34.83185 -32.67996 -31.55898 -29.89161 -28.20470 -25.79802 -24.53098 -23.49502 -21.25897 -19.99961 -18.82752 -17.84880 -17.40436 -16.97527 -15.82940 -15.28016 -14.84981 -14.70310 -14.53920 -14.33286 -13.80916 -13.38778 -13.01948 -12.94366 -12.84215 -12.25830 -12.11723 -11.76582 -11.69302 -11.46562 -11.39379 -11.15123 -10.98642 -10.83691 -10.65683 -10.38505 -9.82254 -9.24825 -8.94628 -8.80813 -8.53790 -8.16617 -7.49955 -6.36672 -4.06555 1.11994 1.75643 2.15806 2.82497 3.05896 3.20775 3.23901 3.27062 3.67392 4.14817 4.45011 4.51716 4.82811 5.12853 5.42730 5.45793 5.63121 5.70758 5.84106 6.00184 6.12783 6.15118 6.23956 6.35035 6.54658 6.71584 6.78225 7.15253 7.63987 7.76231 8.24281 8.50877 8.67482 9.07497 9.33297 9.75991 10.69755 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.013747 B = 0.008865 C = 0.006028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.284228 B = 3157.907005 C = 4644.210499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.008 3.992 3 N -0.386 5.386 4 C 0.048 3.952 5 C 0.553 3.447 6 O -0.591 6.591 7 N -0.407 5.407 8 C -0.306 4.306 9 H 0.118 0.882 10 C 0.036 3.964 11 N -0.880 5.880 12 Si 0.924 3.076 13 H -0.269 1.269 14 H -0.285 1.285 15 H -0.274 1.274 16 C 0.126 3.874 17 C 0.460 3.540 18 O -0.516 6.516 19 O -0.526 6.526 20 C -0.204 4.204 21 C -0.073 4.073 22 S 0.129 5.871 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.271 0.729 27 H 0.146 0.854 28 H 0.101 0.899 29 H 0.395 0.605 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.131 -7.246 -2.424 7.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.272 4.272 3 N -0.100 5.100 4 C -0.086 4.086 5 C 0.341 3.659 6 O -0.476 6.476 7 N -0.123 5.123 8 C -0.434 4.434 9 H 0.136 0.864 10 C -0.168 4.168 11 N -0.519 5.519 12 Si 0.750 3.250 13 H -0.194 1.194 14 H -0.211 1.211 15 H -0.200 1.200 16 C 0.001 3.999 17 C 0.302 3.698 18 O -0.403 6.403 19 O -0.337 6.337 20 C -0.328 4.328 21 C -0.132 4.132 22 S 0.384 5.616 23 H 0.098 0.902 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.081 0.919 27 H 0.163 0.837 28 H 0.119 0.881 29 H 0.252 0.748 30 H 0.092 0.908 31 H 0.120 0.880 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.297 -7.909 -2.051 8.487 hybrid contribution -0.194 1.254 -0.670 1.435 sum -2.491 -6.655 -2.721 7.609 Atomic orbital electron populations 1.20345 0.85703 1.03755 1.03356 1.27310 1.02101 0.90867 1.06893 1.67642 1.03296 1.27703 1.11348 1.20340 0.89993 0.92632 1.05630 1.17259 0.86033 0.82647 0.79993 1.90595 1.16831 1.83756 1.56446 1.42870 1.06429 1.02456 1.60579 1.20093 0.81477 1.14860 1.27004 0.86443 1.25531 0.99616 0.97677 0.93943 1.69803 1.37173 1.23406 1.21491 0.86037 0.82510 0.78260 0.78153 1.19408 1.21094 1.19958 1.20973 0.94816 0.97449 0.86674 1.25075 0.74641 0.75897 0.94196 1.90631 1.53359 1.43156 1.53143 1.84606 1.58474 1.56694 1.33879 1.25344 1.01886 0.96281 1.09259 1.20353 0.89510 1.00386 1.02980 1.82325 0.96660 1.13744 1.68825 0.90179 0.90774 0.89272 0.91923 0.83705 0.88082 0.74844 0.90828 0.88020 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.46 36.01 0.38 -0.56 16 2 C 0.01 0.15 7.34 -13.61 -0.10 0.05 16 3 N -0.39 -8.63 7.00 -8.51 -0.06 -8.69 16 4 C 0.05 1.12 6.54 -84.53 -0.55 0.57 16 5 C 0.55 14.45 7.36 -12.63 -0.09 14.35 16 6 O -0.59 -15.58 13.83 5.23 0.07 -15.50 16 7 N -0.41 -10.74 2.04 -117.40 -0.24 -10.98 16 8 C -0.31 -8.15 7.81 -14.99 -0.12 -8.26 16 9 H 0.12 3.18 5.77 -52.49 -0.30 2.87 16 10 C 0.04 0.93 5.08 -17.45 -0.09 0.84 16 11 N -0.88 -23.20 11.44 55.50 0.63 -22.57 16 12 Si 0.92 20.26 29.57 -169.99 -5.03 15.23 16 13 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 14 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 16 C 0.13 3.05 5.47 -5.19 -0.03 3.02 16 17 C 0.46 10.34 8.35 36.01 0.30 10.64 16 18 O -0.52 -13.03 17.03 -18.75 -0.32 -13.35 16 19 O -0.53 -9.30 13.42 -39.25 -0.53 -9.82 16 20 C -0.20 -3.98 6.40 -35.36 -0.23 -4.21 16 21 C -0.07 -1.25 9.58 36.01 0.34 -0.91 16 22 S 0.13 1.97 22.89 -107.50 -2.46 -0.49 16 23 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 26 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 27 H 0.15 3.57 5.76 -51.93 -0.30 3.27 16 28 H 0.10 2.38 7.54 -51.93 -0.39 1.99 16 29 H 0.39 4.98 9.10 45.56 0.41 5.40 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.10 1.99 6.14 -51.93 -0.32 1.67 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 296.26 15.07 4.46 4.46 Total: -1.00 -32.69 296.26 -5.79 -38.48 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -2.15 Total: 7.70 kcal Atomic # 6 Polarization: 15.71 SS G_CDS: -0.18 Total: 15.53 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.34 Total: -42.24 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -0.77 Total: -38.68 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.03 Total: 15.23 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.46 Total: -0.49 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.69 -5.79 -38.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600683810.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.742 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds