Wall clock time and date at job start Tue Mar 31 2020 05:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30805 * 122.99882 * 2 1 4 4 C 1.30151 * 117.30911 * 180.02562 * 3 2 1 5 5 N 1.38375 * 124.73862 * 180.02562 * 4 3 2 6 6 C 1.34771 * 119.99918 * 180.02562 * 5 4 3 7 7 O 1.21263 * 120.00190 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99821 * 180.02562 * 6 5 4 9 9 H 1.08997 * 109.46983 * 59.99697 * 8 6 5 10 10 C 1.52998 * 109.47084 * 299.99599 * 8 6 5 11 11 C 1.50694 * 109.47213 * 179.97438 * 8 6 5 12 12 H 1.08004 * 120.00197 * 0.02562 * 11 8 6 13 13 C 1.37877 * 120.00444 * 179.97438 * 11 8 6 14 14 N 1.31520 * 119.99490 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 120.00488 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47310 * 59.99632 * 15 13 11 17 17 H 1.48503 * 109.47009 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46819 * 299.99604 * 15 13 11 19 19 S 1.70920 * 110.52348 * 359.76592 * 4 3 2 20 20 C 1.36839 * 122.99879 * 180.02562 * 2 1 3 21 21 C 1.46136 * 126.12592 * 359.95217 * 20 2 1 22 22 O 1.21669 * 120.00140 * 359.71450 * 21 20 2 23 23 O 1.34929 * 120.00161 * 179.97438 * 21 20 2 24 24 H 1.08994 * 109.47405 * 269.97735 * 1 2 3 25 25 H 1.08994 * 109.46636 * 29.98230 * 1 2 3 26 26 H 1.08997 * 109.46734 * 149.97650 * 1 2 3 27 27 H 0.97002 * 119.99348 * 0.02562 * 5 4 3 28 28 H 1.09001 * 109.47401 * 179.97438 * 10 8 6 29 29 H 1.08994 * 109.47530 * 300.00369 * 10 8 6 30 30 H 1.09007 * 109.47372 * 60.00091 * 10 8 6 31 31 H 0.97005 * 119.99895 * 180.02562 * 14 13 11 32 32 H 0.96698 * 114.00120 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2194 1.0970 0.0000 4 6 3.5145 0.9680 -0.0005 5 7 4.4119 2.0213 -0.0001 6 6 5.7373 1.7774 -0.0012 7 8 6.1436 0.6348 -0.0021 8 6 6.7146 2.9246 -0.0002 9 1 6.5596 3.5331 0.8907 10 6 6.4956 3.7822 -1.2481 11 6 8.1219 2.3856 -0.0011 12 1 8.2917 1.3190 -0.0028 13 6 9.1928 3.2541 -0.0009 14 7 8.9860 4.5529 0.0006 15 14 10.9372 2.5860 -0.0029 16 1 11.1483 1.7565 -1.2163 17 1 11.9002 3.7165 -0.0017 18 1 11.1499 1.7541 1.2087 19 16 3.9521 -0.6842 0.0055 20 6 2.2523 -1.1476 -0.0005 21 6 1.7316 -2.5131 -0.0001 22 8 0.5303 -2.7061 0.0060 23 8 2.5830 -3.5598 -0.0012 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3632 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 4.0868 2.9353 0.0010 28 1 7.2022 4.6122 -1.2472 29 1 6.6506 3.1737 -2.1390 30 1 5.4777 4.1721 -1.2470 31 1 9.7394 5.1640 0.0003 32 1 2.1458 -4.4224 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600710950.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:21 Heat of formation + Delta-G solvation = -88.380971 kcal Electronic energy + Delta-G solvation = -19542.826305 eV Core-core repulsion = 16209.268718 eV Total energy + Delta-G solvation = -3333.557587 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.52790 -40.04249 -39.00776 -36.12035 -34.80746 -34.13542 -31.40652 -30.41765 -28.63488 -25.39564 -25.00460 -23.11764 -22.60770 -20.70943 -19.29622 -18.67080 -17.74746 -16.86184 -16.61534 -16.00436 -15.91784 -15.53947 -15.24268 -14.67183 -14.18172 -13.81029 -13.51502 -13.27142 -12.92736 -12.59599 -12.56351 -11.89204 -11.66292 -11.43186 -11.07635 -10.96664 -10.85317 -10.67778 -10.60424 -10.50757 -10.17842 -9.76491 -9.26850 -9.23519 -9.22478 -8.57834 -8.13751 -6.23826 -4.29817 0.28304 1.12660 1.89009 2.18299 2.82908 2.85490 3.15547 3.21140 3.25767 3.29157 3.34534 4.29728 4.44881 4.97436 5.10075 5.44584 5.54190 5.60512 5.63395 5.80985 6.05578 6.24837 6.34788 6.38086 6.52657 6.59236 7.03319 7.23282 7.54602 7.74788 7.77906 7.80777 7.97981 8.34750 8.78214 9.37174 10.83536 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.033149 B = 0.004067 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.471590 B = 6883.211272 C = 7636.830631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.202 3.798 3 N -0.535 5.535 4 C 0.272 3.728 5 N -0.625 5.625 6 C 0.516 3.484 7 O -0.494 6.494 8 C 0.041 3.959 9 H 0.066 0.934 10 C -0.139 4.139 11 C -0.513 4.513 12 H 0.077 0.923 13 C 0.063 3.937 14 N -0.892 5.892 15 Si 0.905 3.095 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.275 1.275 19 S 0.326 5.674 20 C -0.399 4.399 21 C 0.570 3.430 22 O -0.518 6.518 23 O -0.504 6.504 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.425 0.575 28 H 0.101 0.899 29 H 0.036 0.964 30 H 0.016 0.984 31 H 0.265 0.735 32 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.311 -7.543 -0.299 14.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 N -0.260 5.260 4 C -0.091 4.091 5 N -0.275 5.275 6 C 0.307 3.693 7 O -0.367 6.367 8 C 0.020 3.980 9 H 0.083 0.917 10 C -0.197 4.197 11 C -0.551 4.551 12 H 0.095 0.905 13 C -0.139 4.139 14 N -0.530 5.530 15 Si 0.733 3.267 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.200 1.200 19 S 0.580 5.420 20 C -0.522 4.522 21 C 0.415 3.585 22 O -0.409 6.409 23 O -0.314 6.314 24 H 0.100 0.900 25 H 0.094 0.906 26 H 0.114 0.886 27 H 0.265 0.735 28 H 0.119 0.881 29 H 0.056 0.944 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -11.008 -7.753 -0.289 13.468 hybrid contribution -0.472 -0.138 0.010 0.492 sum -11.480 -7.891 -0.279 13.934 Atomic orbital electron populations 1.20661 0.86299 1.04288 1.03628 1.20484 0.97679 0.84430 0.91583 1.66147 1.02384 1.31844 1.25602 1.24142 0.90903 0.96371 0.97685 1.43827 1.05471 1.08176 1.70012 1.23051 0.80063 0.94011 0.72197 1.90480 1.75971 1.23779 1.46465 1.18975 0.92026 0.89156 0.97870 0.91664 1.21838 0.99020 1.01971 0.96826 1.21009 0.87978 0.94361 1.51796 0.90460 1.24935 0.99688 0.94763 0.94477 1.69842 1.31736 1.01521 1.49938 0.86422 0.82951 0.78348 0.78997 1.20006 1.21215 1.20004 1.85336 0.97963 0.94087 1.64627 1.24966 1.01715 0.95107 1.30444 1.18924 0.83658 0.84082 0.71829 1.90875 1.15965 1.85993 1.48113 1.85070 1.41499 1.18487 1.86357 0.89999 0.90558 0.88559 0.73543 0.88055 0.94448 0.96500 0.92505 0.73310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.08 9.71 36.01 0.35 -0.73 16 2 C 0.20 3.02 6.83 -83.53 -0.57 2.45 16 3 N -0.54 -8.61 10.53 -10.80 -0.11 -8.72 16 4 C 0.27 4.57 8.16 -87.53 -0.71 3.86 16 5 N -0.63 -10.44 5.27 -13.13 -0.07 -10.51 16 6 C 0.52 10.35 7.11 -10.99 -0.08 10.27 16 7 O -0.49 -10.90 12.88 5.57 0.07 -10.83 16 8 C 0.04 0.90 2.64 -92.93 -0.25 0.66 16 9 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 10 C -0.14 -2.84 8.87 37.16 0.33 -2.51 16 11 C -0.51 -13.17 8.38 -34.44 -0.29 -13.46 16 12 H 0.08 2.07 6.75 -52.48 -0.35 1.71 16 13 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 14 N -0.89 -23.21 11.32 55.43 0.63 -22.58 16 15 Si 0.91 20.38 29.54 -169.99 -5.02 15.36 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 17 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 S 0.33 5.32 20.02 -107.50 -2.15 3.17 16 20 C -0.40 -6.03 6.50 -36.92 -0.24 -6.27 16 21 C 0.57 7.79 8.25 33.90 0.28 8.07 16 22 O -0.52 -7.54 15.04 -19.40 -0.29 -7.84 16 23 O -0.50 -5.53 13.44 -41.12 -0.55 -6.08 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.10 1.17 6.05 -51.93 -0.31 0.86 16 27 H 0.43 6.06 8.24 -40.82 -0.34 5.72 16 28 H 0.10 2.32 6.07 -51.93 -0.32 2.01 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.02 0.28 7.56 -51.92 -0.39 -0.12 16 31 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 32 H 0.41 2.36 8.98 45.56 0.41 2.77 16 LS Contribution 295.64 15.07 4.46 4.46 Total: -1.00 -29.28 295.64 -6.45 -35.73 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -2.13 Total: 3.98 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -1.27 Total: 3.87 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.44 Total: -41.81 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.77 Total: -24.75 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 5.32 SS G_CDS: -2.15 Total: 3.17 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.28 -6.45 -35.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600710950.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.650 kcal (2) G-P(sol) polarization free energy of solvation -29.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds