Wall clock time and date at job start Tue Mar 31 2020 05:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29377 * 124.69851 * 2 1 4 4 C 1.30943 * 117.46443 * 180.02562 * 3 2 1 5 5 C 1.36773 * 113.92264 * 0.02562 * 4 3 2 6 6 C 1.46566 * 126.18091 * 179.97438 * 5 4 3 7 7 O 1.21734 * 119.99704 * 3.25833 * 6 5 4 8 8 N 1.34771 * 120.00376 * 183.26165 * 6 5 4 9 9 C 1.36889 * 119.99885 * 5.40979 * 8 6 5 10 10 H 1.07998 * 119.99940 * 44.41608 * 9 8 6 11 11 C 1.39010 * 120.00126 * 224.41912 * 9 8 6 12 12 N 1.31396 * 119.99966 * 16.45397 * 11 9 8 13 13 Si 1.86803 * 120.00162 * 196.45774 * 11 9 8 14 14 H 1.48504 * 109.46615 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47320 * 119.99435 * 13 11 9 16 16 H 1.48497 * 109.47157 * 239.99664 * 13 11 9 17 17 C 1.46500 * 120.00043 * 185.41191 * 8 6 5 18 18 C 1.52997 * 109.46959 * 275.55925 * 17 8 6 19 19 C 1.50701 * 109.47093 * 180.02562 * 18 17 8 20 20 O 1.20827 * 119.99775 * 0.02562 * 19 18 17 21 21 O 1.34224 * 120.00291 * 180.02562 * 19 18 17 22 22 S 1.70919 * 124.70471 * 180.29266 * 2 1 3 23 23 H 1.08999 * 109.47254 * 89.98080 * 1 2 3 24 24 H 1.09004 * 109.46711 * 209.97470 * 1 2 3 25 25 H 1.08995 * 109.47301 * 329.97238 * 1 2 3 26 26 H 1.08007 * 123.03394 * 180.02562 * 4 3 2 27 27 H 0.97005 * 119.99969 * 180.02562 * 12 11 9 28 28 H 1.08999 * 109.46751 * 155.56064 * 17 8 6 29 29 H 1.09001 * 109.47275 * 35.56415 * 17 8 6 30 30 H 1.09001 * 109.47077 * 299.99710 * 18 17 8 31 31 H 1.08999 * 109.47275 * 60.00461 * 18 17 8 32 32 H 0.96696 * 117.00482 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2435 1.0637 0.0000 4 6 3.5425 0.8988 -0.0005 5 6 3.9353 -0.4113 -0.0016 6 6 5.3169 -0.9004 -0.0029 7 8 6.2419 -0.1113 0.0568 8 7 5.5634 -2.2237 -0.0702 9 6 4.5304 -3.1040 -0.2488 10 1 3.7634 -2.8954 -0.9800 11 6 4.4687 -4.2665 0.5109 12 7 5.1910 -4.3768 1.6029 13 14 3.3589 -5.6720 -0.0208 14 1 2.6560 -5.3002 -1.2750 15 1 4.1780 -6.8885 -0.2538 16 1 2.3602 -5.9441 1.0439 17 6 6.9367 -2.7199 0.0478 18 6 7.6200 -2.6595 -1.3197 19 6 9.0325 -3.1706 -1.1985 20 8 9.4496 -3.5452 -0.1282 21 8 9.8273 -3.2097 -2.2795 22 16 2.4801 -1.4051 -0.0072 23 1 -0.3634 0.0003 -1.0276 24 1 -0.3633 -0.8903 0.5135 25 1 -0.3633 0.8897 0.5142 26 1 4.2406 1.7229 -0.0002 27 1 5.1482 -5.1882 2.1329 28 1 6.9213 -3.7510 0.4011 29 1 7.4870 -2.1012 0.7567 30 1 7.0697 -3.2783 -2.0285 31 1 7.6355 -1.6285 -1.6730 32 1 10.7250 -3.5457 -2.1525 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600733787.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:24 Heat of formation + Delta-G solvation = -108.974079 kcal Electronic energy + Delta-G solvation = -20112.451580 eV Core-core repulsion = 16778.001008 eV Total energy + Delta-G solvation = -3334.450571 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.38280 -40.74801 -39.88754 -37.25222 -36.86633 -34.06647 -33.18931 -32.23281 -29.35477 -27.31708 -26.10840 -24.64487 -22.62884 -21.63894 -20.65507 -19.24660 -19.18760 -18.35936 -17.72728 -17.43835 -16.96638 -16.51639 -16.23049 -16.00145 -15.31552 -15.22976 -14.67029 -14.39994 -14.16653 -14.12761 -13.65484 -13.29351 -13.22648 -13.02074 -12.91753 -12.82363 -12.57283 -12.18011 -12.09087 -11.95063 -11.68653 -11.32021 -10.71647 -10.29479 -10.12617 -9.75003 -9.39020 -8.47625 -6.34304 -0.44835 0.63794 1.09958 1.17542 1.43670 1.49695 1.62742 1.68681 1.98127 2.24979 2.43001 2.90967 2.97489 3.42872 3.94147 4.06004 4.27517 4.32176 4.46382 4.57000 4.69188 4.74566 4.77748 4.90179 5.09807 5.20473 5.28597 5.39038 5.57511 5.80567 6.19101 6.88495 6.90272 6.99081 7.32070 7.77419 8.54071 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.006785 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.355685 B = 4125.647536 C = 5438.576649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.032 4.032 3 N -0.510 5.510 4 C 0.079 3.921 5 C -0.294 4.294 6 C 0.531 3.469 7 O -0.623 6.623 8 N -0.436 5.436 9 C -0.363 4.363 10 H 0.112 0.888 11 C 0.029 3.971 12 N -0.868 5.868 13 Si 0.965 3.035 14 H -0.239 1.239 15 H -0.274 1.274 16 H -0.268 1.268 17 C 0.146 3.854 18 C -0.120 4.120 19 C 0.497 3.503 20 O -0.550 6.550 21 O -0.506 6.506 22 S 0.279 5.721 23 H 0.101 0.899 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.173 0.827 27 H 0.282 0.718 28 H 0.090 0.910 29 H 0.037 0.963 30 H 0.123 0.877 31 H 0.102 0.898 32 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.416 -1.855 -6.667 8.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.304 4.304 3 N -0.226 5.226 4 C -0.081 4.081 5 C -0.419 4.419 6 C 0.322 3.678 7 O -0.512 6.512 8 N -0.153 5.153 9 C -0.495 4.495 10 H 0.129 0.871 11 C -0.181 4.181 12 N -0.500 5.500 13 Si 0.786 3.214 14 H -0.161 1.161 15 H -0.200 1.200 16 H -0.193 1.193 17 C 0.022 3.978 18 C -0.159 4.159 19 C 0.340 3.660 20 O -0.441 6.441 21 O -0.320 6.320 22 S 0.542 5.458 23 H 0.120 0.880 24 H 0.116 0.884 25 H 0.105 0.895 26 H 0.190 0.810 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.055 0.945 30 H 0.141 0.859 31 H 0.120 0.880 32 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -5.792 -2.145 -6.239 8.779 hybrid contribution 1.436 0.087 0.410 1.495 sum -4.356 -2.058 -5.829 7.562 Atomic orbital electron populations 1.20555 0.82962 1.04845 1.04905 1.29025 1.04475 0.96164 1.00749 1.66236 1.04274 1.33596 1.18533 1.22267 0.91443 0.94927 0.99432 1.25869 0.98966 0.98243 1.18834 1.17623 0.86608 0.83384 0.80219 1.90633 1.45707 1.56637 1.58222 1.43392 1.06469 1.03782 1.61621 1.19734 1.05271 1.02379 1.22114 0.87139 1.26403 0.97702 1.01356 0.92604 1.70024 1.39231 1.28619 1.12137 0.85275 0.78460 0.77424 0.80252 1.16100 1.19973 1.19333 1.20864 0.81934 1.01224 0.93774 1.21641 0.88769 1.04035 1.01408 1.23294 0.88396 0.73300 0.80981 1.90709 1.76216 1.46534 1.30594 1.84499 1.30239 1.78773 1.38504 1.84692 0.92419 1.05906 1.62773 0.88024 0.88376 0.89528 0.80995 0.90840 0.89192 0.94474 0.85879 0.88004 0.71081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.56 10.46 71.24 0.74 -0.81 16 2 C -0.03 -1.05 7.37 88.47 0.65 -0.40 16 3 N -0.51 -19.33 10.50 -189.51 -1.99 -21.32 16 4 C 0.08 3.27 11.17 84.48 0.94 4.21 16 5 C -0.29 -13.05 6.34 24.10 0.15 -12.90 16 6 C 0.53 26.57 7.55 86.42 0.65 27.22 16 7 O -0.62 -33.72 16.48 -4.46 -0.07 -33.80 16 8 N -0.44 -21.06 2.47 -640.18 -1.58 -22.64 16 9 C -0.36 -16.40 6.77 84.09 0.57 -15.83 16 10 H 0.11 4.68 5.66 -13.06 -0.07 4.61 16 11 C 0.03 1.29 4.97 84.94 0.42 1.71 16 12 N -0.87 -42.76 11.76 21.68 0.25 -42.50 16 13 Si 0.97 33.84 29.58 68.60 2.03 35.87 16 14 H -0.24 -7.58 7.11 99.48 0.71 -6.88 16 15 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 16 H -0.27 -9.24 7.11 99.48 0.71 -8.53 16 17 C 0.15 6.84 4.11 86.38 0.35 7.20 16 18 C -0.12 -4.50 6.10 29.85 0.18 -4.32 16 19 C 0.50 17.16 8.33 71.24 0.59 17.75 16 20 O -0.55 -22.74 16.74 21.96 0.37 -22.38 16 21 O -0.51 -12.74 13.42 -51.36 -0.69 -13.42 16 22 S 0.28 10.16 18.63 -56.49 -1.05 9.11 16 23 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 25 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.17 6.89 8.06 -2.91 -0.02 6.87 16 27 H 0.28 12.98 8.31 -92.70 -0.77 12.21 16 28 H 0.09 4.49 5.92 -2.39 -0.01 4.48 16 29 H 0.04 1.92 7.64 -2.39 -0.02 1.90 16 30 H 0.12 4.15 8.14 -2.39 -0.02 4.13 16 31 H 0.10 3.87 8.02 -2.39 -0.02 3.86 16 32 H 0.43 6.41 9.10 -74.06 -0.67 5.74 16 Total: -1.00 -65.70 299.34 2.98 -62.72 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.45 Total: 24.52 kcal Atomic # 6 Polarization: 18.58 SS G_CDS: 5.27 Total: 23.84 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -3.32 Total: -86.47 kcal Atomic # 8 Polarization: -69.20 SS G_CDS: -0.40 Total: -69.60 kcal Atomic # 14 Polarization: 33.84 SS G_CDS: 2.03 Total: 35.87 kcal Atomic # 16 Polarization: 10.16 SS G_CDS: -1.05 Total: 9.11 kcal Total: -65.70 2.98 -62.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600733787.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.254 kcal (2) G-P(sol) polarization free energy of solvation -65.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds