Wall clock time and date at job start Tue Mar 31 2020 05:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30949 * 123.03860 * 2 1 4 4 C 1.29366 * 117.46933 * 179.97438 * 3 2 1 5 5 S 1.70932 * 110.59464 * 359.74918 * 4 3 2 6 6 C 1.36774 * 123.04171 * 180.02562 * 2 1 3 7 7 C 1.46565 * 126.17732 * 359.97438 * 6 2 1 8 8 O 1.21726 * 120.00302 * 6.45291 * 7 6 2 9 9 N 1.34778 * 119.99599 * 186.45298 * 7 6 2 10 10 C 1.36884 * 120.00309 * 356.03651 * 9 7 6 11 11 H 1.07995 * 120.00276 * 48.89721 * 10 9 7 12 12 C 1.39011 * 120.00101 * 228.62398 * 10 9 7 13 13 N 1.31390 * 120.00045 * 6.51963 * 12 10 9 14 14 Si 1.86800 * 120.00140 * 186.52075 * 12 10 9 15 15 H 1.48508 * 109.47199 * 89.99803 * 14 12 10 16 16 H 1.48497 * 109.47460 * 209.99686 * 14 12 10 17 17 H 1.48493 * 109.47230 * 330.00207 * 14 12 10 18 18 C 1.46499 * 119.99653 * 176.03956 * 9 7 6 19 19 C 1.53005 * 109.47108 * 275.29016 * 18 9 7 20 20 C 1.50705 * 109.47359 * 180.02562 * 19 18 9 21 21 O 1.20825 * 119.99661 * 359.97438 * 20 19 18 22 22 O 1.34221 * 119.99808 * 180.02562 * 20 19 18 23 23 H 1.08998 * 109.47035 * 269.99915 * 1 2 3 24 24 H 1.09003 * 109.47488 * 30.00366 * 1 2 3 25 25 H 1.09007 * 109.46993 * 150.00077 * 1 2 3 26 26 H 1.08003 * 124.70775 * 180.02562 * 4 3 2 27 27 H 0.97002 * 120.00612 * 180.02562 * 13 12 10 28 28 H 1.09004 * 109.47605 * 35.28970 * 18 9 7 29 29 H 1.09002 * 109.47109 * 155.29116 * 18 9 7 30 30 H 1.09006 * 109.46956 * 299.99887 * 19 18 9 31 31 H 1.08998 * 109.47061 * 59.99555 * 19 18 9 32 32 H 0.96699 * 116.99626 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2209 1.0977 0.0000 4 6 3.5085 0.9722 0.0005 5 16 3.9516 -0.6787 0.0081 6 6 2.2527 -1.1465 -0.0005 7 6 1.7327 -2.5168 -0.0006 8 8 0.5374 -2.7143 -0.1187 9 7 2.5781 -3.5584 0.1301 10 6 3.9287 -3.3414 0.1813 11 1 4.3304 -2.5922 0.8473 12 6 4.7837 -4.0895 -0.6199 13 7 4.2906 -4.9129 -1.5172 14 14 6.6336 -3.9242 -0.4207 15 1 7.1136 -4.9091 0.5818 16 1 7.2969 -4.1814 -1.7241 17 1 6.9612 -2.5507 0.0389 18 6 2.0515 -4.9226 0.2172 19 6 1.6708 -5.2307 1.6668 20 6 1.1297 -6.6344 1.7566 21 8 1.0556 -7.3180 0.7631 22 8 0.7290 -7.1247 2.9401 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5139 25 1 -0.3633 -0.8901 -0.5139 26 1 4.2067 1.7962 0.0010 27 1 4.8871 -5.4352 -2.0761 28 1 1.1697 -5.0131 -0.4171 29 1 2.8128 -5.6279 -0.1162 30 1 2.5527 -5.1404 2.3011 31 1 0.9096 -4.5254 2.0003 32 1 0.3889 -8.0299 2.9478 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600760580.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:07 Heat of formation + Delta-G solvation = -85.175779 kcal Electronic energy + Delta-G solvation = -20366.889804 eV Core-core repulsion = 17033.471204 eV Total energy + Delta-G solvation = -3333.418600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.92308 -39.29512 -38.20740 -35.87206 -35.12381 -32.33454 -31.23241 -30.62698 -27.53252 -25.57341 -24.40196 -23.75898 -21.10611 -19.91243 -18.89992 -17.80992 -17.59822 -16.71520 -16.19562 -15.87643 -15.47605 -14.85279 -14.60110 -14.43650 -13.71672 -13.49213 -12.94771 -12.81437 -12.75238 -12.62766 -11.95456 -11.94124 -11.85624 -11.37376 -11.30191 -11.21754 -11.12078 -10.61368 -10.42465 -10.27296 -10.19184 -9.57046 -8.85951 -8.64923 -8.59446 -8.08419 -7.64043 -6.70054 -4.59314 1.10752 2.19918 2.59336 2.62681 2.95929 3.02788 3.05531 3.24219 3.37439 3.81951 4.18390 4.57993 4.69967 4.90671 5.49282 5.68209 5.72300 5.81041 5.86255 6.11885 6.20888 6.21971 6.43935 6.52222 6.71506 6.76623 6.97171 7.03510 7.19172 7.67031 7.96432 8.23229 8.40170 8.67776 9.13354 9.58059 10.29268 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.013630 B = 0.007967 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.815383 B = 3513.709674 C = 5112.268999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.096 3.904 3 N -0.487 5.487 4 C -0.077 4.077 5 S 0.256 5.744 6 C -0.253 4.253 7 C 0.551 3.449 8 O -0.582 6.582 9 N -0.433 5.433 10 C -0.352 4.352 11 H 0.099 0.901 12 C 0.063 3.937 13 N -0.835 5.835 14 Si 0.909 3.091 15 H -0.270 1.270 16 H -0.276 1.276 17 H -0.256 1.256 18 C 0.137 3.863 19 C -0.128 4.128 20 C 0.484 3.516 21 O -0.514 6.514 22 O -0.524 6.524 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.098 0.902 26 H 0.180 0.820 27 H 0.280 0.720 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.244 1.575 5.553 5.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 N -0.203 5.203 4 C -0.370 4.370 5 S 0.518 5.482 6 C -0.378 4.378 7 C 0.340 3.660 8 O -0.468 6.468 9 N -0.151 5.151 10 C -0.485 4.485 11 H 0.116 0.884 12 C -0.149 4.149 13 N -0.467 5.467 14 Si 0.734 3.266 15 H -0.195 1.195 16 H -0.201 1.201 17 H -0.180 1.180 18 C 0.013 3.987 19 C -0.167 4.167 20 C 0.326 3.674 21 O -0.401 6.401 22 O -0.336 6.336 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.117 0.883 26 H 0.197 0.803 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.129 0.871 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 1.691 1.659 5.035 5.564 hybrid contribution 0.010 -0.470 0.040 0.472 sum 1.701 1.189 5.075 5.483 Atomic orbital electron populations 1.20470 0.87223 1.03610 1.02457 1.20769 0.97911 0.85609 1.00083 1.66070 1.05679 1.32159 1.16342 1.29295 0.95844 1.06910 1.04923 1.85073 1.05594 0.95076 1.62497 1.25762 0.96311 0.99068 1.16610 1.17197 0.86022 0.83076 0.79665 1.90628 1.15494 1.84991 1.55724 1.43130 1.05618 1.03798 1.62566 1.19311 0.81103 1.23451 1.24635 0.88424 1.25644 1.00952 0.95231 0.93098 1.69813 1.36974 1.22503 1.17444 0.86163 0.81693 0.80117 0.78662 1.19479 1.20063 1.18020 1.21129 1.00936 0.85815 0.90779 1.21890 1.02631 0.88902 1.03254 1.23699 0.73627 0.90157 0.79897 1.90712 1.51576 1.60553 1.37272 1.84584 1.76111 1.36275 1.36599 0.91568 0.92090 0.88328 0.80300 0.90969 0.91234 0.87104 0.87711 0.88236 0.74027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 9.80 36.00 0.35 -1.09 16 2 C 0.10 1.97 6.83 -83.50 -0.57 1.40 16 3 N -0.49 -9.56 10.49 -11.29 -0.12 -9.68 16 4 C -0.08 -1.33 12.21 51.72 0.63 -0.70 16 5 S 0.26 4.77 18.57 -107.50 -2.00 2.77 16 6 C -0.25 -5.51 6.35 -36.76 -0.23 -5.74 16 7 C 0.55 13.12 7.55 -12.90 -0.10 13.02 16 8 O -0.58 -14.55 13.96 5.17 0.07 -14.47 16 9 N -0.43 -10.13 2.46 -116.33 -0.29 -10.42 16 10 C -0.35 -7.96 6.97 -15.01 -0.10 -8.06 16 11 H 0.10 2.10 5.26 -31.55 -0.17 1.93 16 12 C 0.06 1.43 5.17 -17.45 -0.09 1.34 16 13 N -0.84 -20.41 11.50 55.50 0.64 -19.78 16 14 Si 0.91 17.27 29.56 -169.99 -5.02 12.24 16 15 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 16 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 17 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 18 C 0.14 3.07 4.16 -4.04 -0.02 3.06 16 19 C -0.13 -2.35 6.10 -27.88 -0.17 -2.52 16 20 C 0.48 8.37 8.33 36.01 0.30 8.67 16 21 O -0.51 -10.43 16.74 -18.75 -0.31 -10.74 16 22 O -0.52 -7.04 13.42 -39.23 -0.53 -7.56 16 23 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 24 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.10 1.97 5.93 -51.92 -0.31 1.66 16 26 H 0.18 2.37 8.06 -52.48 -0.42 1.94 16 27 H 0.28 6.44 8.31 -40.82 -0.34 6.10 16 28 H 0.07 1.69 7.49 -51.93 -0.39 1.30 16 29 H 0.11 2.67 5.89 -51.93 -0.31 2.37 16 30 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 31 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 32 H 0.40 3.48 9.10 45.56 0.41 3.89 16 LS Contribution 294.07 15.07 4.43 4.43 Total: -1.00 -29.23 294.07 -5.12 -34.35 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -2.00 Total: 9.47 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: 0.00 Total: 9.39 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.23 Total: -39.87 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.77 Total: -32.78 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.02 Total: 12.24 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -2.00 Total: 2.77 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.23 -5.12 -34.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600760580.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.824 kcal (2) G-P(sol) polarization free energy of solvation -29.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds