Wall clock time and date at job start Tue Mar 31 2020 05:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 S 1.70602 * 124.51003 * 2 1 4 4 C 1.75804 * 91.64665 * 180.02562 * 3 2 1 5 5 C 1.46357 * 125.41276 * 179.97438 * 4 3 2 6 6 O 1.21643 * 120.00513 * 180.02562 * 5 4 3 7 7 O 1.34911 * 120.00230 * 0.02562 * 5 4 3 8 8 C 1.36798 * 109.17771 * 359.73647 * 4 3 2 9 9 C 1.34270 * 124.51892 * 180.02562 * 2 1 3 10 10 N 1.40782 * 122.52112 * 359.97438 * 9 2 1 11 11 C 1.34777 * 120.00029 * 173.90399 * 10 9 2 12 12 O 1.21598 * 119.99817 * 5.40826 * 11 10 9 13 13 N 1.34771 * 120.00022 * 185.40917 * 11 10 9 14 14 C 1.46499 * 120.00132 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.47480 * 180.02562 * 14 13 11 16 16 H 1.08004 * 119.99454 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00350 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99918 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00144 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46766 * 90.00274 * 19 17 15 21 21 H 1.48496 * 109.47080 * 210.00125 * 19 17 15 22 22 H 1.48502 * 109.47019 * 330.00291 * 19 17 15 23 23 H 1.08996 * 109.47752 * 269.95796 * 1 2 3 24 24 H 1.08997 * 109.47722 * 29.96355 * 1 2 3 25 25 H 1.09007 * 109.46582 * 149.96448 * 1 2 3 26 26 H 0.96689 * 114.00271 * 180.02562 * 7 5 4 27 27 H 1.08003 * 123.37674 * 180.23853 * 8 4 3 28 28 H 0.97001 * 119.99719 * 353.62239 * 10 9 2 29 29 H 0.97001 * 119.99768 * 0.02562 * 13 11 10 30 30 H 1.09004 * 109.47219 * 300.00065 * 14 13 11 31 31 H 1.08997 * 109.46954 * 59.99837 * 14 13 11 32 32 H 0.97001 * 119.99899 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.4735 1.4058 0.0000 4 6 3.9502 0.4518 -0.0008 5 6 5.3098 0.9935 -0.0017 6 8 6.2648 0.2401 -0.0026 7 8 5.5041 2.3286 -0.0014 8 6 3.6265 -0.8773 0.0049 9 6 2.2678 -1.1063 -0.0005 10 7 1.7186 -2.4026 -0.0005 11 6 2.5244 -3.4758 -0.1250 12 8 3.7317 -3.3313 -0.1383 13 7 1.9920 -4.7090 -0.2347 14 6 2.8678 -5.8755 -0.3706 15 6 2.0296 -7.1236 -0.4753 16 1 0.9523 -7.0547 -0.4434 17 6 2.6381 -8.3532 -0.6118 18 7 3.9500 -8.4370 -0.6512 19 14 1.5991 -9.9003 -0.7409 20 1 1.2909 -10.1718 -2.1680 21 1 2.3475 -11.0483 -0.1689 22 1 0.3330 -9.7104 0.0115 23 1 -0.3634 -0.0008 1.0276 24 1 -0.3634 0.8903 -0.5132 25 1 -0.3633 -0.8898 -0.5144 26 1 6.4348 2.5906 -0.0025 27 1 4.3623 -1.6680 0.0094 28 1 0.7608 -2.5235 0.0931 29 1 1.0289 -4.8241 -0.2245 30 1 3.4762 -5.7705 -1.2689 31 1 3.5173 -5.9458 0.5019 32 1 4.3780 -9.3021 -0.7476 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600871696.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:47 Heat of formation + Delta-G solvation = -85.748884 kcal Electronic energy + Delta-G solvation = -19231.449231 eV Core-core repulsion = 15898.005780 eV Total energy + Delta-G solvation = -3333.443451 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.48702 -39.95468 -37.73445 -36.12393 -34.33790 -33.69440 -32.30925 -31.92471 -27.87582 -26.88854 -24.15288 -23.22677 -21.77454 -20.76564 -19.22394 -18.65444 -18.19125 -17.24840 -16.69405 -15.79134 -15.72499 -15.27247 -15.17911 -14.79833 -14.36322 -14.08416 -13.72558 -13.46658 -13.19759 -12.66977 -12.53272 -12.08636 -12.03111 -11.97726 -11.66140 -11.15399 -10.96783 -10.93451 -10.73560 -10.37798 -10.32070 -9.44317 -9.36338 -8.81543 -8.72098 -8.14786 -7.64468 -6.20147 -4.27706 0.30455 1.38285 1.77632 2.16557 2.87093 2.91552 3.20782 3.22165 3.29208 3.31760 3.77074 4.28396 4.65626 4.78527 4.93535 5.16170 5.20176 5.28053 5.47612 5.49506 5.77213 5.95387 6.21789 6.26676 6.80529 6.93769 7.35397 7.43951 7.47392 7.72053 7.74543 7.93773 8.60261 8.76265 9.09093 9.39058 10.89908 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.027294 B = 0.003546 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.609732 B = 7894.130168 C = 8893.235306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.262 4.262 3 S 0.233 5.767 4 C -0.264 4.264 5 C 0.554 3.446 6 O -0.497 6.497 7 O -0.507 6.507 8 C -0.044 4.044 9 C 0.155 3.845 10 N -0.675 5.675 11 C 0.691 3.309 12 O -0.578 6.578 13 N -0.718 5.718 14 C 0.264 3.736 15 C -0.545 4.545 16 H 0.063 0.937 17 C 0.065 3.935 18 N -0.883 5.883 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.273 1.273 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.413 0.587 27 H 0.202 0.798 28 H 0.406 0.594 29 H 0.389 0.611 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.019 21.040 1.612 22.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.386 4.386 3 S 0.500 5.500 4 C -0.383 4.383 5 C 0.396 3.604 6 O -0.385 6.385 7 O -0.318 6.318 8 C -0.080 4.080 9 C 0.046 3.954 10 N -0.323 5.323 11 C 0.391 3.609 12 O -0.456 6.456 13 N -0.369 5.369 14 C 0.144 3.856 15 C -0.584 4.584 16 H 0.081 0.919 17 C -0.139 4.139 18 N -0.520 5.520 19 Si 0.732 3.268 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.198 1.198 23 H 0.094 0.906 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.270 0.730 27 H 0.219 0.781 28 H 0.241 0.759 29 H 0.222 0.778 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.229 22.110 1.557 23.023 hybrid contribution -0.575 -2.445 -0.048 2.512 sum -6.804 19.665 1.509 20.863 Atomic orbital electron populations 1.20226 0.87197 1.03314 1.02834 1.23731 1.01710 0.97227 1.15924 1.82819 0.92501 1.04872 1.69809 1.23258 0.95010 0.97462 1.22552 1.19295 0.88055 0.80347 0.72678 1.91009 1.42355 1.59471 1.45707 1.84988 1.36068 1.24193 1.86599 1.21856 0.96707 0.96025 0.93363 1.16224 0.91483 0.84262 1.03390 1.42674 1.10397 1.02642 1.76602 1.16172 0.85276 0.80755 0.78673 1.90699 1.12679 1.84027 1.58206 1.45787 1.10797 1.05162 1.75130 1.19106 0.89377 0.79338 0.97799 1.21183 0.93201 0.90999 1.52985 0.91871 1.24942 0.95080 0.99246 0.94680 1.69975 1.08334 1.25535 1.48202 0.86392 0.79967 0.82059 0.78345 1.20442 1.20963 1.19760 0.90561 0.90858 0.90817 0.72989 0.78128 0.75904 0.77807 0.95312 0.95302 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 9.93 36.00 0.36 -0.24 16 2 C -0.26 -2.96 6.29 -35.71 -0.22 -3.19 16 3 S 0.23 2.47 22.86 -107.50 -2.46 0.01 16 4 C -0.26 -3.79 6.45 -36.84 -0.24 -4.03 16 5 C 0.55 7.76 8.27 34.00 0.28 8.04 16 6 O -0.50 -8.70 17.57 -19.38 -0.34 -9.04 16 7 O -0.51 -4.93 13.40 -41.07 -0.55 -5.48 16 8 C -0.04 -0.74 8.89 -40.27 -0.36 -1.10 16 9 C 0.16 2.28 6.52 -85.31 -0.56 1.72 16 10 N -0.68 -10.02 5.40 -15.34 -0.08 -10.10 16 11 C 0.69 13.71 8.52 -86.92 -0.74 12.97 16 12 O -0.58 -13.72 13.07 5.28 0.07 -13.65 16 13 N -0.72 -14.59 5.55 -66.41 -0.37 -14.96 16 14 C 0.26 6.86 5.43 -5.20 -0.03 6.83 16 15 C -0.55 -14.46 9.28 -34.44 -0.32 -14.78 16 16 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 18 N -0.88 -25.76 13.29 55.43 0.74 -25.03 16 19 Si 0.91 20.54 29.54 -169.99 -5.02 15.51 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.52 7.19 -51.92 -0.37 0.15 16 26 H 0.41 2.10 8.98 45.56 0.41 2.51 16 27 H 0.20 4.13 5.19 -52.64 -0.27 3.86 16 28 H 0.41 4.49 7.47 -40.82 -0.30 4.19 16 29 H 0.39 6.59 8.34 -40.82 -0.34 6.25 16 30 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 302.67 15.07 4.56 4.56 Total: -1.00 -34.25 302.67 -7.48 -41.74 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -2.11 Total: 8.53 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -1.92 Total: 7.90 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 0.28 Total: -50.08 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.82 Total: -28.17 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.46 Total: 0.01 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.25 -7.48 -41.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600871696.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.010 kcal (2) G-P(sol) polarization free energy of solvation -34.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds