Wall clock time and date at job start Tue Mar 31 2020 05:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99778 * 2 1 4 4 H 1.48499 * 109.47104 * 265.00032 * 3 2 1 5 5 H 1.48498 * 109.46903 * 25.00395 * 3 2 1 6 6 H 1.48503 * 109.46625 * 145.00481 * 3 2 1 7 7 C 1.37877 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00176 * 190.17799 * 7 2 1 9 9 C 1.50704 * 119.99894 * 10.18039 * 7 2 1 10 10 O 1.42901 * 113.38316 * 52.39853 * 9 7 2 11 11 C 1.53510 * 114.16841 * 185.47643 * 9 7 2 12 12 N 1.47483 * 87.93138 * 139.67548 * 11 9 7 13 13 C 1.46903 * 110.99951 * 221.30099 * 12 11 9 14 14 C 1.50698 * 109.47150 * 169.99565 * 13 12 11 15 15 N 1.28628 * 124.70419 * 90.02318 * 14 13 12 16 16 C 1.33603 * 115.76590 * 180.02562 * 15 14 13 17 17 C 1.47104 * 123.15696 * 180.02562 * 16 15 14 18 18 O 1.21557 * 120.00578 * 179.97438 * 17 16 15 19 19 O 1.34798 * 119.99843 * 359.97438 * 17 16 15 20 20 C 1.35298 * 113.68916 * 359.97438 * 16 15 14 21 21 S 1.70761 * 124.71091 * 270.01970 * 14 13 12 22 22 C 1.47486 * 87.83179 * 332.98724 * 12 11 9 23 23 H 0.96993 * 120.00321 * 359.97438 * 1 2 3 24 24 H 0.96700 * 113.99781 * 317.08893 * 10 9 7 25 25 H 1.09004 * 113.47831 * 24.90742 * 11 9 7 26 26 H 1.09000 * 113.47534 * 254.43820 * 11 9 7 27 27 H 1.09000 * 109.47280 * 49.99173 * 13 12 11 28 28 H 1.09006 * 109.46702 * 289.99562 * 13 12 11 29 29 H 0.96705 * 116.99953 * 180.02562 * 19 17 16 30 30 H 1.07990 * 125.58833 * 180.26612 * 20 16 15 31 31 H 1.09003 * 113.47057 * 141.78162 * 22 12 11 32 32 H 1.08993 * 113.47772 * 272.24477 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6022 1.9855 -1.3947 5 1 1.3976 2.6808 0.5918 6 1 3.4899 1.4729 0.8030 7 6 2.0046 -1.1940 -0.0005 8 1 3.0718 -1.2014 0.1647 9 6 1.2689 -2.4888 -0.2318 10 8 0.4634 -2.4804 -1.4122 11 6 2.1395 -3.7432 -0.0738 12 7 0.9985 -4.3843 0.6062 13 6 1.4479 -5.1628 1.7681 14 6 0.2516 -5.5967 2.5752 15 7 -0.3924 -6.6958 2.3970 16 6 -1.4282 -6.9013 3.2155 17 6 -2.2754 -8.1023 3.1552 18 8 -3.2040 -8.2307 3.9291 19 8 -2.0221 -9.0606 2.2416 20 6 -1.6241 -5.9015 4.1059 21 16 -0.4371 -4.6977 3.8532 22 6 0.5557 -3.0373 1.0120 23 1 -0.4850 0.8400 0.0004 24 1 -0.0375 -1.6633 -1.5407 25 1 3.0031 -3.5937 0.5743 26 1 2.3997 -4.2134 -1.0221 27 1 2.1003 -4.5473 2.3876 28 1 1.9944 -6.0421 1.4269 29 1 -2.6063 -9.8312 2.2402 30 1 -2.4004 -5.8712 4.8560 31 1 -0.5265 -2.9092 0.9839 32 1 0.9965 -2.6993 1.9497 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061996.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:08 Heat of formation + Delta-G solvation = -50.517147 kcal Electronic energy + Delta-G solvation = -19719.896745 eV Core-core repulsion = 16387.981056 eV Total energy + Delta-G solvation = -3331.915689 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.67852 -39.52473 -38.81440 -36.20246 -34.59764 -32.23886 -31.74788 -28.84132 -26.62360 -25.87079 -25.04423 -23.34984 -21.36271 -19.93018 -19.13811 -18.72325 -17.64119 -17.27208 -16.34870 -15.99201 -15.37894 -15.23834 -14.87389 -14.50083 -14.16936 -13.77788 -13.59742 -13.42224 -12.58985 -12.12611 -12.04479 -11.86317 -11.70740 -11.67375 -11.22603 -10.98656 -10.90308 -10.78988 -10.45220 -10.13154 -9.74439 -9.69409 -9.35897 -8.95226 -8.81219 -8.31035 -8.00557 -6.33706 -4.43079 0.37353 1.17256 1.55498 1.69937 2.97580 3.08278 3.16396 3.24457 3.26029 4.02317 4.20445 4.74709 4.82946 4.96060 5.04335 5.23481 5.38110 5.65879 5.74785 5.88097 5.91560 6.15728 6.23694 6.25781 6.58417 6.94802 7.01693 7.22079 7.40365 7.66024 7.78325 7.83814 7.90076 8.59162 9.26985 9.38331 10.71947 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.030366 B = 0.004093 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.874079 B = 6839.929068 C = 7130.093490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.074 3.926 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.250 3.750 10 O -0.563 6.563 11 C 0.006 3.994 12 N -0.464 5.464 13 C 0.089 3.911 14 C 0.051 3.949 15 N -0.417 5.417 16 C 0.017 3.983 17 C 0.570 3.430 18 O -0.515 6.515 19 O -0.492 6.492 20 C -0.232 4.232 21 S 0.246 5.754 22 C -0.020 4.020 23 H 0.270 0.730 24 H 0.383 0.617 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.412 0.588 30 H 0.190 0.810 31 H 0.072 0.928 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.585 -9.511 8.193 12.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.130 4.130 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.371 6.371 11 C -0.122 4.122 12 N -0.187 5.187 13 C -0.042 4.042 14 C -0.230 4.230 15 N -0.132 5.132 16 C -0.118 4.118 17 C 0.412 3.588 18 O -0.404 6.404 19 O -0.302 6.302 20 C -0.375 4.375 21 S 0.505 5.495 22 C -0.149 4.149 23 H 0.080 0.920 24 H 0.234 0.766 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.269 0.731 30 H 0.207 0.793 31 H 0.091 0.909 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.516 -9.589 8.031 12.518 hybrid contribution -0.404 0.540 0.682 0.959 sum -0.920 -9.049 8.713 12.595 Atomic orbital electron populations 1.69784 1.05993 1.27867 1.48844 1.25064 0.94944 0.99606 0.93368 0.86506 0.79827 0.82483 0.78631 1.20164 1.21085 1.19742 1.21473 0.95076 0.90754 1.50903 0.91390 1.19296 0.86880 0.90860 0.82167 1.86095 1.63346 1.44001 1.43669 1.24113 0.93463 0.95874 0.98769 1.69195 1.21388 1.12692 1.15466 1.21346 0.89645 1.00588 0.92631 1.27115 1.02567 0.93377 0.99905 1.66980 1.05106 1.18822 1.22279 1.19168 0.98223 0.96136 0.98224 1.19548 0.80894 0.81450 0.76923 1.90919 1.29883 1.78500 1.41140 1.84731 1.58848 1.31779 1.54799 1.26689 1.06993 0.98342 1.05499 1.83210 1.18762 1.19834 1.27680 1.24722 1.01849 0.87111 1.01220 0.92014 0.76649 0.91242 0.90540 0.91881 0.88063 0.73055 0.79277 0.90931 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.75 11.82 55.43 0.66 -22.10 16 2 C 0.07 1.85 5.21 -17.82 -0.09 1.75 16 3 Si 0.90 19.41 29.55 -169.99 -5.02 14.39 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.54 -13.66 8.64 -34.44 -0.30 -13.95 16 8 H 0.07 1.67 7.84 -52.49 -0.41 1.25 16 9 C 0.25 5.97 1.40 -91.24 -0.13 5.85 16 10 O -0.56 -14.52 13.56 -35.23 -0.48 -14.99 16 11 C 0.01 0.13 7.12 -7.55 -0.05 0.08 16 12 N -0.46 -9.29 6.40 -246.08 -1.58 -10.86 16 13 C 0.09 1.44 5.40 -4.98 -0.03 1.41 16 14 C 0.05 0.82 6.51 -13.62 -0.09 0.73 16 15 N -0.42 -7.09 10.60 -8.53 -0.09 -7.18 16 16 C 0.02 0.27 6.71 -84.55 -0.57 -0.30 16 17 C 0.57 8.20 8.31 34.33 0.29 8.49 16 18 O -0.52 -7.93 17.50 -19.31 -0.34 -8.27 16 19 O -0.49 -5.94 13.37 -40.76 -0.54 -6.48 16 20 C -0.23 -3.07 10.62 29.68 0.32 -2.75 16 21 S 0.25 3.24 22.67 -107.50 -2.44 0.81 16 22 C -0.02 -0.43 6.49 -7.55 -0.05 -0.48 16 23 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 24 H 0.38 9.93 7.10 45.56 0.32 10.25 16 25 H 0.07 1.27 7.72 -51.93 -0.40 0.87 16 26 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 27 H 0.06 0.90 7.56 -51.93 -0.39 0.51 16 28 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.41 2.58 9.11 45.56 0.42 3.00 16 30 H 0.19 2.05 8.03 -52.49 -0.42 1.63 16 31 H 0.07 1.72 8.14 -51.93 -0.42 1.29 16 32 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 LS Contribution 300.97 15.07 4.54 4.54 Total: -1.00 -30.25 300.97 -7.69 -37.94 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -1.69 Total: 11.40 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -0.70 Total: 0.82 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: -1.01 Total: -40.14 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -1.36 Total: -29.75 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -2.44 Total: 0.81 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.25 -7.69 -37.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061996.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.577 kcal (2) G-P(sol) polarization free energy of solvation -30.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds