Wall clock time and date at job start Tue Mar 31 2020 05:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00186 * 2 1 4 4 H 1.48499 * 109.47494 * 89.99520 * 3 2 1 5 5 H 1.48502 * 109.47096 * 209.99893 * 3 2 1 6 6 H 1.48504 * 109.47236 * 329.99446 * 3 2 1 7 7 C 1.37886 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99984 * 5.13851 * 7 2 1 9 9 C 1.50706 * 119.99589 * 185.13516 * 7 2 1 10 10 O 1.42890 * 112.93948 * 52.41060 * 9 7 2 11 11 C 1.53936 * 113.73345 * 280.69653 * 9 7 2 12 12 N 1.47951 * 86.17971 * 221.92550 * 11 9 7 13 13 C 1.46905 * 110.99822 * 137.58619 * 12 11 9 14 14 C 1.50706 * 109.47340 * 70.63960 * 13 12 11 15 15 N 1.29390 * 124.70631 * 89.69534 * 14 13 12 16 16 C 1.30919 * 117.46674 * 179.83912 * 15 14 13 17 17 C 1.36756 * 113.92694 * 0.44581 * 16 15 14 18 18 C 1.46506 * 126.17174 * 179.76936 * 17 16 15 19 19 O 1.21614 * 119.99447 * 180.02562 * 18 17 16 20 20 O 1.34873 * 120.00181 * 359.97438 * 18 17 16 21 21 S 1.70924 * 124.70526 * 270.00564 * 14 13 12 22 22 C 1.47949 * 90.76613 * 24.69333 * 12 11 9 23 23 H 0.96998 * 120.00034 * 174.95957 * 1 2 3 24 24 H 0.96708 * 113.99980 * 304.19125 * 10 9 7 25 25 H 1.09000 * 113.76260 * 336.24966 * 11 9 7 26 26 H 1.09003 * 113.75356 * 107.60639 * 11 9 7 27 27 H 1.08999 * 109.47421 * 190.63970 * 13 12 11 28 28 H 1.09004 * 109.47241 * 310.64132 * 13 12 11 29 29 H 1.07993 * 123.03404 * 180.21607 * 16 15 14 30 30 H 0.96705 * 117.00266 * 179.97438 * 20 18 17 31 31 H 1.09002 * 113.76401 * 220.98939 * 22 12 11 32 32 H 1.09003 * 113.76318 * 89.62656 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5467 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4677 -2.1276 -0.0828 9 6 3.5070 -1.1966 0.1174 10 8 3.9800 -0.4419 1.2346 11 6 4.2316 -0.8750 -1.2022 12 7 5.1700 -1.9587 -0.8360 13 6 5.4903 -2.7938 -2.0014 14 6 6.3556 -2.0127 -2.9566 15 7 7.6488 -1.9843 -2.9244 16 6 8.2595 -1.2590 -3.8270 17 6 7.4131 -0.6149 -4.6866 18 6 7.8062 0.2659 -5.7894 19 8 6.9551 0.7833 -6.4872 20 8 9.1118 0.5036 -6.0301 21 16 5.7645 -1.0354 -4.2282 22 6 4.1347 -2.5978 0.0058 23 1 -0.4850 -0.8368 -0.0738 24 1 3.6758 0.4761 1.2464 25 1 3.6393 -1.0888 -2.0919 26 1 4.6891 0.1141 -1.2221 27 1 6.0245 -3.6856 -1.6736 28 1 4.5680 -3.0866 -2.5031 29 1 9.3345 -1.1739 -3.8851 30 1 9.3222 1.0911 -6.7689 31 1 4.5148 -2.9853 0.9510 32 1 3.5141 -3.3156 -0.5306 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601062823.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:10 Heat of formation + Delta-G solvation = -40.966400 kcal Electronic energy + Delta-G solvation = -19830.139998 eV Core-core repulsion = 16498.638461 eV Total energy + Delta-G solvation = -3331.501537 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.48031 -39.85884 -39.14706 -36.31831 -35.06061 -32.57893 -31.90300 -29.41722 -26.72601 -25.62466 -24.68141 -23.15801 -22.09417 -20.19221 -19.21314 -18.46029 -18.01915 -17.63771 -16.93002 -16.09870 -15.86192 -15.45094 -15.14961 -14.69773 -14.33611 -13.98584 -13.79209 -13.37502 -13.11649 -12.58881 -12.28164 -11.88867 -11.83648 -11.68614 -11.36766 -11.31049 -11.12067 -10.65693 -10.35405 -9.77893 -9.74881 -9.63480 -9.47171 -9.09243 -8.91902 -8.62553 -8.22517 -6.67353 -4.44338 -0.06013 0.88953 1.49713 2.06612 2.79574 2.90267 3.14581 3.20703 3.35500 3.89104 4.20824 4.40949 4.72481 4.77671 4.89839 5.14611 5.23035 5.35241 5.49157 5.62851 5.73708 5.85075 5.97744 6.11940 6.29886 6.44722 6.68342 6.73717 7.41785 7.48182 7.56779 7.58458 8.08000 8.53471 8.65019 9.30823 10.67360 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.022184 B = 0.005048 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.852730 B = 5545.505675 C = 6193.498463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.036 3.964 3 Si 1.028 2.972 4 H -0.275 1.275 5 H -0.265 1.265 6 H -0.281 1.281 7 C -0.613 4.613 8 H 0.068 0.932 9 C 0.208 3.792 10 O -0.552 6.552 11 C -0.044 4.044 12 N -0.466 5.466 13 C 0.083 3.917 14 C 0.081 3.919 15 N -0.474 5.474 16 C 0.135 3.865 17 C -0.324 4.324 18 C 0.570 3.430 19 O -0.513 6.513 20 O -0.507 6.507 21 S 0.252 5.748 22 C 0.026 3.974 23 H 0.272 0.728 24 H 0.352 0.648 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.067 0.933 29 H 0.190 0.810 30 H 0.418 0.582 31 H 0.086 0.914 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.718 -2.024 -10.274 18.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.172 4.172 3 Si 0.856 3.144 4 H -0.202 1.202 5 H -0.190 1.190 6 H -0.207 1.207 7 C -0.651 4.651 8 H 0.086 0.914 9 C 0.167 3.833 10 O -0.361 6.361 11 C -0.173 4.173 12 N -0.190 5.190 13 C -0.048 4.048 14 C -0.192 4.192 15 N -0.188 5.188 16 C -0.027 4.027 17 C -0.447 4.447 18 C 0.413 3.587 19 O -0.403 6.403 20 O -0.319 6.319 21 S 0.512 5.488 22 C -0.102 4.102 23 H 0.083 0.917 24 H 0.202 0.798 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.125 0.875 28 H 0.085 0.915 29 H 0.206 0.794 30 H 0.277 0.723 31 H 0.105 0.895 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.279 -1.011 -9.616 17.245 hybrid contribution 0.324 -0.915 -1.273 1.601 sum 14.603 -1.926 -10.889 18.317 Atomic orbital electron populations 1.70779 1.06717 1.31140 1.44052 1.25780 0.96458 1.02478 0.92438 0.84351 0.76034 0.76135 0.77854 1.20229 1.19029 1.20700 1.22384 0.90182 0.95917 1.56647 0.91380 1.20325 0.92791 0.88297 0.81937 1.86444 1.76132 1.25532 1.47956 1.25329 0.93978 0.96020 1.01982 1.68807 1.32069 1.07184 1.10967 1.21453 0.96273 0.96137 0.90934 1.27637 0.93648 0.99193 0.98713 1.66166 1.07595 1.21409 1.23655 1.22711 1.01676 0.90365 0.87942 1.24929 0.98644 1.13932 1.07214 1.19014 0.80351 0.77876 0.81480 1.90976 1.51664 1.49360 1.48290 1.84556 1.26587 1.66051 1.54691 1.84357 1.03153 1.38190 1.23147 1.24029 0.91102 0.97502 0.97546 0.91737 0.79794 0.90926 0.90133 0.87475 0.91492 0.79355 0.72337 0.89540 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.92 13.70 55.43 0.76 -25.16 16 2 C 0.04 0.97 5.47 -17.82 -0.10 0.87 16 3 Si 1.03 23.09 24.79 -169.99 -4.21 18.88 16 4 H -0.28 -5.85 6.95 56.52 0.39 -5.46 16 5 H -0.26 -5.43 4.85 56.52 0.27 -5.16 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.61 -16.13 9.04 -34.43 -0.31 -16.44 16 8 H 0.07 1.90 8.04 -52.49 -0.42 1.47 16 9 C 0.21 4.77 1.06 -90.84 -0.10 4.68 16 10 O -0.55 -13.15 13.42 -35.23 -0.47 -13.62 16 11 C -0.04 -0.89 5.29 -2.77 -0.01 -0.91 16 12 N -0.47 -8.68 6.25 -239.73 -1.50 -10.18 16 13 C 0.08 1.25 5.40 -4.97 -0.03 1.22 16 14 C 0.08 1.21 6.47 -13.30 -0.09 1.12 16 15 N -0.47 -7.00 10.50 -11.26 -0.12 -7.12 16 16 C 0.14 1.69 11.20 -18.48 -0.21 1.48 16 17 C -0.32 -4.25 6.51 -36.79 -0.24 -4.49 16 18 C 0.57 6.99 8.30 34.06 0.28 7.27 16 19 O -0.51 -7.71 17.75 -19.35 -0.34 -8.05 16 20 O -0.51 -4.21 13.23 -40.96 -0.54 -4.75 16 21 S 0.25 3.53 22.62 -107.50 -2.43 1.10 16 22 C 0.03 0.52 7.36 -2.77 -0.02 0.50 16 23 H 0.27 7.83 8.72 -40.82 -0.36 7.47 16 24 H 0.35 7.90 4.23 45.56 0.19 8.10 16 25 H 0.07 1.43 7.73 -51.93 -0.40 1.02 16 26 H 0.08 1.67 6.52 -51.93 -0.34 1.33 16 27 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.07 0.92 7.69 -51.93 -0.40 0.52 16 29 H 0.19 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.42 1.46 9.11 45.56 0.42 1.88 16 31 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 32 H 0.08 1.36 7.74 -51.93 -0.40 0.96 16 LS Contribution 291.39 15.07 4.39 4.39 Total: -1.00 -32.27 291.39 -7.20 -39.47 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -1.91 Total: 9.75 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -0.82 Total: -4.71 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: -0.86 Total: -42.45 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -1.36 Total: -26.43 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -4.21 Total: 18.88 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -2.43 Total: 1.10 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.27 -7.20 -39.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062823.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.501 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds