Wall clock time and date at job start Tue Mar 31 2020 05:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99696 * 2 1 4 4 H 1.48502 * 109.47014 * 269.99549 * 3 2 1 5 5 H 1.48495 * 109.47331 * 29.99790 * 3 2 1 6 6 H 1.48506 * 109.46980 * 150.00109 * 3 2 1 7 7 C 1.37874 * 120.00551 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00635 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99589 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72352 * 11 10 9 14 14 C 1.39004 * 120.00271 * 180.27567 * 13 11 10 15 15 N 1.29624 * 124.94700 * 179.72750 * 14 13 11 16 16 C 1.31988 * 116.91448 * 179.77559 * 15 14 13 17 17 C 1.50707 * 122.71220 * 180.26297 * 16 15 14 18 18 C 1.50698 * 109.47294 * 305.26608 * 17 16 15 19 19 O 1.20822 * 119.99950 * 0.02562 * 18 17 16 20 20 O 1.34228 * 119.99899 * 180.02562 * 18 17 16 21 21 C 1.33435 * 114.57076 * 0.51239 * 16 15 14 22 22 S 1.70965 * 124.94084 * 0.02982 * 14 13 11 23 23 H 0.97004 * 120.00291 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46965 * 60.00104 * 9 7 2 25 25 H 1.09000 * 109.47629 * 300.00433 * 9 7 2 26 26 H 1.09004 * 109.47066 * 60.00203 * 10 9 7 27 27 H 1.09000 * 109.47665 * 300.00395 * 10 9 7 28 28 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 29 29 H 1.08997 * 109.47069 * 65.26768 * 17 16 15 30 30 H 1.09000 * 109.46738 * 185.26517 * 17 16 15 31 31 H 0.96698 * 116.99779 * 180.02562 * 20 18 17 32 32 H 1.08002 * 125.96882 * 179.73467 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4919 -4.9671 0.0033 12 8 0.2791 -4.9672 0.0041 13 7 2.1658 -6.1343 -0.0023 14 6 1.4709 -7.3381 -0.0064 15 7 2.0198 -8.5123 -0.0169 16 6 1.2068 -9.5520 -0.0147 17 6 1.7039 -10.9747 -0.0201 18 6 2.6380 -11.1761 -1.1854 19 8 2.8760 -10.2584 -1.9344 20 8 3.2055 -12.3750 -1.3912 21 6 -0.0910 -9.2415 -0.0127 22 16 -0.2324 -7.4855 -0.0058 23 1 -0.4851 0.8401 -0.0004 24 1 0.6241 -2.5574 -0.8880 25 1 0.6247 -2.5563 0.8919 26 1 2.8727 -3.6038 0.8910 27 1 2.8714 -3.6047 -0.8890 28 1 3.1358 -6.1343 -0.0032 29 1 2.2344 -11.1777 0.9102 30 1 0.8572 -11.6551 -0.1113 31 1 3.7978 -12.4556 -2.1513 32 1 -0.9113 -9.9440 -0.0148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066825.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:12 Heat of formation + Delta-G solvation = -87.296155 kcal Electronic energy + Delta-G solvation = -18916.363821 eV Core-core repulsion = 15582.853275 eV Total energy + Delta-G solvation = -3333.510546 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.70640 -40.07725 -39.10803 -36.26250 -34.91863 -33.64908 -31.95050 -31.05209 -28.46659 -26.27808 -24.37366 -22.57988 -21.69448 -20.81201 -19.30898 -18.26481 -18.07559 -16.98613 -16.92841 -16.56678 -15.86880 -15.71870 -15.63972 -14.53693 -14.38193 -14.27995 -13.71090 -13.25790 -13.08605 -12.92786 -12.51954 -12.28597 -11.68576 -11.50892 -11.24745 -10.99970 -10.84785 -10.67220 -10.65161 -10.11841 -9.83991 -9.63816 -9.50646 -9.20793 -9.09219 -8.40859 -8.19254 -6.04246 -4.09371 0.81476 1.26192 1.92766 2.06821 2.35122 2.78900 2.87035 3.23496 3.29550 3.36145 3.38399 4.20738 4.41463 4.72922 5.02263 5.13065 5.17446 5.24816 5.31360 5.49975 5.81950 5.98634 6.00382 6.26813 6.30498 6.63312 7.11443 7.63126 7.70056 7.72191 7.84417 7.94879 8.08009 8.31429 8.97731 9.55046 11.06592 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.040698 B = 0.003024 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.828413 B = 9256.710580 C = 9784.539895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.036 3.964 10 C -0.122 4.122 11 C 0.509 3.491 12 O -0.495 6.495 13 N -0.632 5.632 14 C 0.256 3.744 15 N -0.505 5.505 16 C 0.092 3.908 17 C -0.031 4.031 18 C 0.477 3.523 19 O -0.492 6.492 20 O -0.523 6.523 21 C -0.324 4.324 22 S 0.256 5.744 23 H 0.262 0.738 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.422 0.578 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.410 0.590 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.438 -23.444 0.423 23.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.162 4.162 11 C 0.298 3.702 12 O -0.368 6.368 13 N -0.283 5.283 14 C -0.112 4.112 15 N -0.228 5.228 16 C -0.042 4.042 17 C -0.071 4.071 18 C 0.317 3.683 19 O -0.377 6.377 20 O -0.336 6.336 21 C -0.465 4.465 22 S 0.507 5.493 23 H 0.072 0.928 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.261 0.739 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.268 0.732 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.966 -22.153 0.550 22.247 hybrid contribution 1.810 -0.095 -0.557 1.896 sum 3.776 -22.248 -0.007 22.566 Atomic orbital electron populations 1.69985 1.06074 1.26792 1.49820 1.25013 0.94845 0.99316 0.95096 0.86563 0.79766 0.83326 0.78139 1.20610 1.21170 1.19830 1.21155 0.93007 0.90755 1.51939 0.92416 1.18964 0.93078 0.89149 0.98976 1.21953 1.00951 0.89685 1.03616 1.22305 0.88953 0.85134 0.73827 1.90612 1.14208 1.85435 1.46510 1.43448 1.11438 1.01664 1.71718 1.23524 0.96031 0.89492 1.02135 1.66040 1.38333 0.96135 1.22309 1.18883 0.88633 0.93171 1.03474 1.19731 0.98608 0.92269 0.96483 1.23193 0.79424 0.79588 0.86062 1.90787 1.58785 1.42219 1.45902 1.84504 1.60260 1.36035 1.52773 1.27216 1.00386 1.02783 1.16084 1.85198 1.00966 0.96106 1.67030 0.92816 0.95500 0.95474 0.89092 0.89073 0.73938 0.86210 0.86095 0.73163 0.80849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.53 -14.44 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.04 0.91 4.26 -27.88 -0.12 0.79 16 10 C -0.12 -2.28 5.64 -27.88 -0.16 -2.44 16 11 C 0.51 9.16 7.79 -10.98 -0.09 9.08 16 12 O -0.50 -10.42 13.45 5.55 0.07 -10.34 16 13 N -0.63 -9.60 5.40 -13.07 -0.07 -9.67 16 14 C 0.26 4.06 8.19 -87.35 -0.72 3.35 16 15 N -0.51 -7.72 9.72 -11.28 -0.11 -7.83 16 16 C 0.09 1.16 5.64 -84.20 -0.47 0.68 16 17 C -0.03 -0.26 6.30 -29.03 -0.18 -0.44 16 18 C 0.48 4.97 8.29 36.00 0.30 5.27 16 19 O -0.49 -7.34 16.19 -18.75 -0.30 -7.64 16 20 O -0.52 -3.80 13.42 -39.25 -0.53 -4.33 16 21 C -0.32 -3.77 11.05 29.05 0.32 -3.45 16 22 S 0.26 3.79 20.22 -107.50 -2.17 1.61 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 25 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 26 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 28 H 0.42 5.24 8.82 -40.82 -0.36 4.88 16 29 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.12 0.62 8.03 -51.93 -0.42 0.20 16 31 H 0.41 1.47 9.10 45.56 0.41 1.88 16 32 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 304.97 15.07 4.60 4.60 Total: -1.00 -35.95 304.97 -6.76 -42.71 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -2.44 Total: 0.92 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -1.53 Total: -0.33 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.56 Total: -43.36 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.76 Total: -22.31 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -2.17 Total: 1.61 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -35.95 -6.76 -42.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066825.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.581 kcal (2) G-P(sol) polarization free energy of solvation -35.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds