Wall clock time and date at job start Tue Mar 31 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99670 * 2 1 4 4 H 1.48495 * 109.47045 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47085 * 300.00471 * 3 2 1 6 6 H 1.48508 * 109.46923 * 60.00034 * 3 2 1 7 7 C 1.37873 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99680 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00311 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47218 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47218 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99785 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00073 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00344 * 180.02562 * 13 11 10 15 15 C 1.50695 * 109.47646 * 179.97438 * 14 13 11 16 16 N 1.29391 * 124.70391 * 90.01973 * 15 14 13 17 17 C 1.30914 * 117.46856 * 179.97438 * 16 15 14 18 18 C 1.36760 * 113.93325 * 0.02562 * 17 16 15 19 19 C 1.46496 * 126.18245 * 179.97438 * 18 17 16 20 20 O 1.21612 * 120.00029 * 359.97438 * 19 18 17 21 21 O 1.34878 * 119.99998 * 179.97438 * 19 18 17 22 22 S 1.70923 * 124.70931 * 269.98657 * 15 14 13 23 23 H 0.96993 * 120.00159 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47071 * 60.00032 * 9 7 2 25 25 H 1.08992 * 109.47027 * 299.99767 * 9 7 2 26 26 H 1.09007 * 109.47237 * 60.00206 * 10 9 7 27 27 H 1.09002 * 109.47657 * 300.00483 * 10 9 7 28 28 H 0.97005 * 120.00027 * 359.97438 * 13 11 10 29 29 H 1.09007 * 109.46813 * 59.99419 * 14 13 11 30 30 H 1.09002 * 109.46966 * 300.00379 * 14 13 11 31 31 H 1.08001 * 123.03699 * 179.73614 * 17 16 15 32 32 H 0.96705 * 116.99820 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4920 -4.9671 0.0012 12 8 0.2792 -4.9672 0.0011 13 7 2.1659 -6.1343 0.0018 14 6 1.4336 -7.4031 0.0019 15 6 2.4129 -8.5485 0.0020 16 7 2.8913 -9.1086 1.0658 17 6 3.7349 -10.0960 0.9010 18 6 3.9907 -10.3944 -0.4089 19 6 4.8883 -11.4440 -0.8974 20 8 5.4892 -12.1466 -0.1073 21 8 5.0484 -11.6312 -2.2235 22 16 3.0451 -9.2885 -1.4030 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8902 26 1 2.8721 -3.6043 0.8906 27 1 2.8722 -3.6043 -0.8894 28 1 3.1360 -6.1343 0.0015 29 1 0.8072 -7.4611 -0.8884 30 1 0.8065 -7.4606 0.8916 31 1 4.1914 -10.6241 1.7251 32 1 5.6514 -12.3357 -2.4978 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067151.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:12 Heat of formation + Delta-G solvation = -90.684412 kcal Electronic energy + Delta-G solvation = -18449.467355 eV Core-core repulsion = 15115.809883 eV Total energy + Delta-G solvation = -3333.657472 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.85280 -39.99716 -39.12999 -36.60323 -34.95755 -33.48776 -31.67393 -30.89309 -28.60367 -25.89253 -24.66990 -23.39157 -21.64151 -20.20384 -19.89500 -19.30319 -18.01732 -17.14782 -16.92760 -16.36774 -15.98669 -15.76948 -15.38476 -14.97144 -14.56695 -14.35387 -14.06611 -13.52910 -13.26849 -13.06249 -12.20428 -12.15588 -12.08989 -12.07356 -11.34306 -11.19783 -10.96039 -10.60171 -10.27249 -10.13263 -10.00062 -9.75281 -9.64090 -9.20738 -9.05047 -9.03258 -8.34254 -5.98149 -4.02572 -0.49469 0.59238 1.06116 1.68604 2.39721 2.41363 3.11488 3.31658 3.32497 3.39270 3.42388 3.63318 4.33429 4.46172 4.51616 4.85194 5.10159 5.31916 5.37113 5.49926 5.62167 5.84949 6.16884 6.18663 6.40976 6.83035 7.05422 7.26482 7.66674 7.72571 7.82706 8.04313 8.35155 8.62019 9.05849 9.61272 11.12820 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.037962 B = 0.002613 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.410941 B =10711.298275 C =10976.126655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.128 4.128 11 C 0.515 3.485 12 O -0.528 6.528 13 N -0.741 5.741 14 C 0.191 3.809 15 C 0.043 3.957 16 N -0.463 5.463 17 C 0.141 3.859 18 C -0.306 4.306 19 C 0.569 3.431 20 O -0.502 6.502 21 O -0.511 6.511 22 S 0.251 5.749 23 H 0.261 0.739 24 H 0.024 0.976 25 H 0.025 0.975 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.400 0.600 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.194 0.806 32 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.632 -23.938 -4.225 26.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.168 4.168 11 C 0.304 3.696 12 O -0.402 6.402 13 N -0.397 5.397 14 C 0.064 3.936 15 C -0.230 4.230 16 N -0.178 5.178 17 C -0.020 4.020 18 C -0.429 4.429 19 C 0.411 3.589 20 O -0.391 6.391 21 O -0.323 6.323 22 S 0.510 5.490 23 H 0.070 0.930 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.234 0.766 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.210 0.790 32 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 8.088 -23.265 -4.522 25.043 hybrid contribution 1.777 -0.178 0.616 1.889 sum 9.865 -23.443 -3.906 25.732 Atomic orbital electron populations 1.70003 1.06052 1.26522 1.50231 1.25026 0.94831 0.99262 0.95284 0.86533 0.80003 0.83812 0.77596 1.19747 1.21014 1.21011 1.21246 0.92977 0.90954 1.51343 0.92528 1.18922 0.93170 0.89326 0.98732 1.21892 1.00795 0.91379 1.02756 1.21657 0.88684 0.85198 0.74085 1.90693 1.14342 1.87342 1.47871 1.46234 1.10229 1.04417 1.78861 1.19805 0.90377 0.78338 1.05069 1.27761 1.01473 1.01803 0.91983 1.66290 1.11089 1.09251 1.31131 1.22636 0.92457 0.92069 0.94842 1.25037 1.11966 1.07686 0.98167 1.18961 0.78634 0.80943 0.80383 1.90976 1.45768 1.45577 1.56811 1.84594 1.65259 1.57735 1.24717 1.84295 1.33129 1.22616 1.09005 0.92975 0.95727 0.95708 0.89985 0.90005 0.76594 0.88891 0.88011 0.78957 0.71954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.11 13.29 55.43 0.74 -26.37 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.53 -14.69 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.04 0.94 4.26 -27.89 -0.12 0.83 16 10 C -0.13 -2.48 5.64 -27.89 -0.16 -2.63 16 11 C 0.52 9.24 7.83 -10.99 -0.09 9.15 16 12 O -0.53 -11.68 15.98 5.56 0.09 -11.59 16 13 N -0.74 -9.55 5.55 -61.47 -0.34 -9.89 16 14 C 0.19 2.14 6.24 -5.20 -0.03 2.10 16 15 C 0.04 0.42 6.74 -13.31 -0.09 0.33 16 16 N -0.46 -4.90 10.50 -11.26 -0.12 -5.02 16 17 C 0.14 1.29 11.16 -18.48 -0.21 1.09 16 18 C -0.31 -2.66 6.52 -36.79 -0.24 -2.90 16 19 C 0.57 4.85 8.30 34.06 0.28 5.14 16 20 O -0.50 -5.50 17.66 -19.35 -0.34 -5.84 16 21 O -0.51 -2.93 13.33 -40.98 -0.55 -3.48 16 22 S 0.25 1.96 23.04 -107.50 -2.48 -0.52 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 25 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 26 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.40 4.21 8.46 -40.82 -0.35 3.86 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.19 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.42 0.45 9.11 45.56 0.42 0.86 16 LS Contribution 311.93 15.07 4.70 4.70 Total: -1.00 -35.92 311.93 -6.80 -42.72 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -2.43 Total: -0.78 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -1.06 Total: -0.35 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.28 Total: -41.28 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.80 Total: -20.91 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.48 Total: -0.52 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.92 -6.80 -42.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067151.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.960 kcal (2) G-P(sol) polarization free energy of solvation -35.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds