Wall clock time and date at job start Tue Mar 31 2020 05:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99860 * 2 1 4 4 H 1.48502 * 109.46844 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47170 * 299.99458 * 3 2 1 6 6 H 1.48496 * 109.47476 * 59.99831 * 3 2 1 7 7 C 1.37878 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99968 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00060 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47316 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99973 * 179.97438 * 10 9 7 12 12 O 1.21588 * 120.00151 * 359.73121 * 11 10 9 13 13 N 1.34784 * 119.99935 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99893 * 179.72905 * 13 11 10 15 15 C 1.50699 * 109.46700 * 180.02562 * 14 13 11 16 16 C 1.33855 * 124.52403 * 89.72517 * 15 14 13 17 17 C 1.37412 * 115.11515 * 179.78680 * 16 15 14 18 18 C 1.36752 * 113.28706 * 0.48385 * 17 16 15 19 19 C 1.46391 * 125.46677 * 179.76033 * 18 17 16 20 20 O 1.21635 * 119.99715 * 0.02562 * 19 18 17 21 21 O 1.34894 * 120.00412 * 180.02562 * 19 18 17 22 22 S 1.70620 * 124.51487 * 270.01923 * 15 14 13 23 23 H 0.97003 * 120.00435 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.46987 * 59.99452 * 9 7 2 25 25 H 1.08997 * 109.46849 * 300.00214 * 9 7 2 26 26 H 0.97004 * 120.00009 * 0.02562 * 10 9 7 27 27 H 0.97005 * 119.99846 * 359.72693 * 13 11 10 28 28 H 1.08998 * 109.47134 * 299.99552 * 14 13 11 29 29 H 1.08994 * 109.47397 * 59.99843 * 14 13 11 30 30 H 1.07999 * 122.44313 * 359.97112 * 16 15 14 31 31 H 1.07996 * 123.35993 * 180.26670 * 17 16 15 32 32 H 0.96699 * 117.00434 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5583 -5.1055 0.0065 13 7 2.6296 -5.9078 0.0016 14 6 2.1412 -7.2890 0.0081 15 6 3.3134 -8.2361 0.0080 16 6 3.9102 -8.7048 1.1107 17 6 4.9603 -9.5621 0.8860 18 6 5.2116 -9.7728 -0.4417 19 6 6.2685 -10.6305 -0.9804 20 8 7.0114 -11.2276 -0.2247 21 8 6.4186 -10.7587 -2.3148 22 16 4.0613 -8.8485 -1.3980 23 1 -0.4851 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 3.1567 -3.4355 0.0009 27 1 3.5833 -5.7305 -0.0024 28 1 1.5389 -7.4571 0.9009 29 1 1.5325 -7.4634 -0.8790 30 1 3.5878 -8.4315 2.1046 31 1 5.5325 -10.0208 1.6787 32 1 7.1302 -11.3364 -2.6231 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068379.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:49 Heat of formation + Delta-G solvation = -92.431599 kcal Electronic energy + Delta-G solvation = -18513.257355 eV Core-core repulsion = 15179.524119 eV Total energy + Delta-G solvation = -3333.733236 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.47761 -39.39437 -38.22753 -36.42687 -34.80427 -34.02820 -32.36304 -30.81644 -27.86090 -26.59715 -24.05491 -22.86567 -22.38352 -20.28452 -19.53344 -19.08962 -18.25273 -17.48148 -16.38801 -16.14195 -16.07131 -15.77897 -15.08373 -14.75018 -14.65359 -13.78270 -13.71360 -13.49388 -13.21158 -12.99667 -12.47761 -12.43506 -11.99830 -11.98341 -11.74134 -11.29175 -11.07076 -10.94162 -10.91747 -10.32105 -9.65741 -9.37067 -9.18527 -8.98320 -8.88735 -8.72254 -7.81017 -6.16770 -4.23322 -0.09297 1.02693 1.51932 1.78202 2.53573 2.57595 3.23429 3.29393 3.32597 3.41012 3.86646 4.29349 4.32301 4.77688 4.82121 4.97378 5.08464 5.19574 5.33466 5.60023 5.65257 5.72670 5.94349 5.99762 6.66186 7.04973 7.41833 7.46777 7.52186 7.54769 7.86160 8.01123 8.73837 8.88806 9.27360 9.45146 10.93503 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.032248 B = 0.002737 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.074676 B =10226.278765 C =10608.283605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.727 5.727 11 C 0.694 3.306 12 O -0.599 6.599 13 N -0.756 5.756 14 C 0.209 3.791 15 C -0.207 4.207 16 C -0.139 4.139 17 C -0.038 4.038 18 C -0.276 4.276 19 C 0.561 3.439 20 O -0.509 6.509 21 O -0.513 6.513 22 S 0.276 5.724 23 H 0.265 0.735 24 H 0.025 0.975 25 H 0.025 0.975 26 H 0.387 0.613 27 H 0.394 0.606 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.138 -20.698 -2.311 24.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.379 5.379 11 C 0.394 3.606 12 O -0.478 6.478 13 N -0.415 5.415 14 C 0.083 3.917 15 C -0.328 4.328 16 C -0.171 4.171 17 C -0.072 4.072 18 C -0.395 4.395 19 C 0.404 3.596 20 O -0.399 6.399 21 O -0.325 6.325 22 S 0.547 5.453 23 H 0.075 0.925 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.219 0.781 27 H 0.227 0.773 28 H 0.105 0.895 29 H 0.096 0.904 30 H 0.170 0.830 31 H 0.174 0.826 32 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 10.432 -20.425 -3.564 23.210 hybrid contribution 2.032 0.500 1.445 2.543 sum 12.463 -19.926 -2.118 23.598 Atomic orbital electron populations 1.69985 1.06092 1.27192 1.49005 1.24947 0.94916 0.99426 0.94758 0.86356 0.79807 0.82958 0.77741 1.19657 1.20804 1.20813 1.21259 0.93310 0.90398 1.53040 0.91883 1.19009 0.87761 0.81021 0.97686 1.45726 1.10905 1.04289 1.76963 1.16106 0.85063 0.81003 0.78426 1.90887 1.14122 1.84161 1.58618 1.45193 1.09137 1.04238 1.82887 1.19442 0.90268 0.78143 1.03866 1.24654 1.04069 1.05274 0.98766 1.20058 0.97060 0.99694 1.00266 1.20785 0.96082 0.95762 0.94594 1.23545 1.06079 1.11688 0.98168 1.19313 0.81711 0.78402 0.80154 1.90956 1.44154 1.45283 1.59488 1.84597 1.56932 1.66895 1.24072 1.83446 1.20533 1.35899 1.05456 0.92494 0.95668 0.95652 0.78069 0.77295 0.89479 0.90405 0.82968 0.82619 0.72250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.27 7.03 5.43 -5.19 -0.03 7.00 16 10 N -0.73 -15.18 5.55 -66.41 -0.37 -15.55 16 11 C 0.69 13.78 8.57 -86.91 -0.74 13.04 16 12 O -0.60 -14.48 16.34 5.29 0.09 -14.39 16 13 N -0.76 -10.57 5.55 -66.42 -0.37 -10.94 16 14 C 0.21 2.47 6.10 -5.19 -0.03 2.43 16 15 C -0.21 -1.93 5.65 -35.85 -0.20 -2.14 16 16 C -0.14 -1.18 9.99 -41.42 -0.41 -1.59 16 17 C -0.04 -0.33 10.01 -40.42 -0.40 -0.73 16 18 C -0.28 -2.57 6.45 -36.84 -0.24 -2.81 16 19 C 0.56 5.37 8.30 34.01 0.28 5.65 16 20 O -0.51 -6.16 17.63 -19.37 -0.34 -6.50 16 21 O -0.51 -3.48 13.29 -41.02 -0.55 -4.02 16 22 S 0.28 2.38 22.87 -107.50 -2.46 -0.08 16 23 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.39 6.89 8.34 -40.82 -0.34 6.55 16 27 H 0.39 4.51 8.48 -40.82 -0.35 4.17 16 28 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.42 0.88 9.11 45.56 0.42 1.29 16 LS Contribution 311.13 15.07 4.69 4.69 Total: -1.00 -34.92 311.13 -8.13 -43.05 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -2.34 Total: 5.67 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -2.20 Total: 7.59 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.00 Total: -51.71 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.80 Total: -24.91 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.46 Total: -0.08 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.92 -8.13 -43.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068379.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.382 kcal (2) G-P(sol) polarization free energy of solvation -34.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds