Wall clock time and date at job start Tue Mar 31 2020 05:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00025 * 2 1 4 4 H 1.48498 * 109.47024 * 240.00345 * 3 2 1 5 5 H 1.48498 * 109.47017 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46925 * 120.00204 * 3 2 1 7 7 C 1.37881 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99571 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00496 * 0.02562 * 7 2 1 10 10 S 1.80996 * 109.47545 * 179.97438 * 9 7 2 11 11 C 1.76197 * 100.00178 * 179.97438 * 10 9 7 12 12 N 1.32715 * 119.54090 * 0.02562 * 11 10 9 13 13 C 1.31604 * 121.64229 * 179.97438 * 12 11 10 14 14 C 1.39695 * 120.50775 * 359.97438 * 13 12 11 15 15 C 1.47361 * 120.47439 * 180.02562 * 14 13 12 16 16 O 1.21511 * 119.99936 * 180.02562 * 15 14 13 17 17 O 1.34766 * 119.99822 * 359.97438 * 15 14 13 18 18 C 1.40415 * 119.05068 * 0.02562 * 14 13 12 19 19 C 1.36828 * 118.49210 * 359.97438 * 18 14 13 20 20 N 1.48019 * 120.30579 * 180.02562 * 19 18 14 21 21 O 1.21795 * 120.00254 * 359.97438 * 20 19 18 22 22 O 1.21809 * 119.99993 * 180.02562 * 20 19 18 23 23 H 0.96996 * 120.00084 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47593 * 59.99407 * 9 7 2 25 25 H 1.09007 * 109.46748 * 299.99511 * 9 7 2 26 26 H 1.08001 * 119.74671 * 180.27543 * 13 12 11 27 27 H 0.96704 * 117.00091 * 180.02562 * 17 15 14 28 28 H 1.07994 * 120.75537 * 180.02562 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 16 2.4272 -3.8749 -0.0029 11 6 1.3071 -5.2351 -0.0034 12 7 -0.0002 -5.0062 -0.0033 13 6 -0.8735 -5.9907 -0.0041 14 6 -0.4437 -7.3199 -0.0056 15 6 -1.4222 -8.4217 -0.0071 16 8 -1.0388 -9.5748 -0.0080 17 8 -2.7423 -8.1505 -0.0065 18 6 0.9340 -7.5910 -0.0057 19 6 1.8067 -6.5371 -0.0049 20 7 3.2673 -6.7767 -0.0055 21 8 3.6975 -7.9162 -0.0063 22 8 4.0391 -5.8344 -0.0042 23 1 -0.4850 0.8400 0.0004 24 1 0.6246 -2.5564 -0.8919 25 1 0.6241 -2.5575 0.8881 26 1 -1.9306 -5.7693 -0.0086 27 1 -3.3457 -8.9062 -0.0072 28 1 1.2967 -8.6082 -0.0073 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068441.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:13 Heat of formation + Delta-G solvation = -57.950503 kcal Electronic energy + Delta-G solvation = -19092.651173 eV Core-core repulsion = 15624.580056 eV Total energy + Delta-G solvation = -3468.071118 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.034 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.12003 -40.86284 -39.59774 -36.47734 -36.37970 -33.50785 -33.20518 -32.39163 -28.80499 -26.84788 -25.91168 -23.65732 -23.04075 -21.95038 -19.62963 -18.77104 -18.27468 -18.03957 -17.46037 -17.03271 -16.44730 -16.36087 -16.00320 -15.10072 -14.44409 -14.35922 -13.79900 -13.64380 -12.97230 -12.55599 -12.52940 -11.93218 -11.71234 -11.47594 -11.12436 -11.02798 -10.98816 -10.96207 -10.74379 -10.53034 -10.24979 -9.94414 -9.75441 -9.16794 -8.75861 -7.47055 -6.33864 -4.42725 -0.27355 0.11805 1.34267 1.38494 1.59603 2.09844 2.62366 3.06178 3.19339 3.19797 3.23499 3.28081 4.05640 4.21846 4.22504 4.27468 4.50967 4.60617 5.03245 5.18893 5.43177 5.74530 6.09615 6.44118 6.87319 6.99588 7.21660 7.52679 7.53792 7.77605 7.80121 8.58761 9.22694 10.76440 Molecular weight = 284.03amu Principal moments of inertia in cm(-1) A = 0.020199 B = 0.004806 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.870950 B = 5825.197558 C = 7195.923874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.073 3.927 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.532 4.532 8 H 0.068 0.932 9 C 0.023 3.977 10 S 0.085 5.915 11 C 0.179 3.821 12 N -0.474 5.474 13 C 0.233 3.767 14 C -0.227 4.227 15 C 0.545 3.455 16 O -0.513 6.513 17 O -0.508 6.508 18 C 0.077 3.923 19 C -0.121 4.121 20 N 0.041 4.959 21 O -0.182 6.182 22 O -0.129 6.129 23 H 0.268 0.732 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.189 0.811 27 H 0.419 0.581 28 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.350 -13.229 -0.016 13.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.571 4.571 8 H 0.086 0.914 9 C -0.124 4.124 10 S 0.342 5.658 11 C -0.069 4.069 12 N -0.187 5.187 13 C 0.064 3.936 14 C -0.238 4.238 15 C 0.388 3.612 16 O -0.403 6.403 17 O -0.321 6.321 18 C 0.050 3.950 19 C -0.219 4.219 20 N 0.554 4.446 21 O -0.389 6.389 22 O -0.346 6.346 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.206 0.794 27 H 0.278 0.722 28 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.659 -11.846 -0.017 12.398 hybrid contribution -0.925 -0.622 0.000 1.114 sum -4.584 -12.468 -0.017 13.284 Atomic orbital electron populations 1.69947 1.06151 1.27740 1.48041 1.24940 0.94988 0.99299 0.94066 0.86399 0.79463 0.81629 0.79147 1.19721 1.20907 1.19725 1.20564 0.93316 0.88622 1.54641 0.91359 1.21803 0.95685 0.92029 1.02862 1.87075 1.08565 0.94342 1.75835 1.24437 0.96418 0.96911 0.89168 1.68945 0.99056 1.33578 1.17152 1.23776 1.01049 0.86566 0.82253 1.19648 0.91499 0.93921 1.18750 1.20095 0.81450 0.87472 0.72138 1.90929 1.80550 1.22199 1.46602 1.84536 1.17263 1.44409 1.85844 1.21017 0.90664 1.00187 0.83146 1.21088 0.82088 0.95373 1.23304 1.43185 1.02416 1.00679 0.98325 1.94513 1.80924 1.08221 1.55225 1.94555 1.52900 1.34783 1.52388 0.92182 0.92400 0.92389 0.79415 0.72199 0.80958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.29 13.29 55.43 0.74 -23.55 15 2 C 0.07 1.93 5.46 -17.82 -0.10 1.83 15 3 Si 0.91 20.21 29.54 -169.99 -5.02 15.19 15 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 5 H -0.28 -6.24 7.11 56.52 0.40 -5.83 15 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 7 C -0.53 -13.89 9.13 -34.44 -0.31 -14.20 15 8 H 0.07 1.74 7.71 -52.49 -0.40 1.34 15 9 C 0.02 0.56 4.58 36.00 0.16 0.72 15 10 S 0.09 1.70 18.79 -107.50 -2.02 -0.32 15 11 C 0.18 3.16 6.98 -16.72 -0.12 3.04 15 12 N -0.47 -7.93 9.10 -11.65 -0.11 -8.04 15 13 C 0.23 2.94 10.79 -17.11 -0.18 2.76 15 14 C -0.23 -2.74 5.89 -104.82 -0.62 -3.35 15 15 C 0.54 5.79 8.27 34.44 0.28 6.07 15 16 O -0.51 -6.73 17.19 -19.27 -0.33 -7.06 15 17 O -0.51 -3.66 12.69 -40.67 -0.52 -4.18 15 18 C 0.08 1.02 9.15 -39.27 -0.36 0.66 15 19 C -0.12 -1.94 6.85 -80.00 -0.55 -2.49 15 20 N 0.04 0.70 4.45 33.94 0.15 0.86 15 21 O -0.18 -3.04 18.48 -29.46 -0.54 -3.59 15 22 O -0.13 -2.37 15.81 -29.46 -0.47 -2.84 15 23 H 0.27 6.97 8.31 -40.82 -0.34 6.63 15 24 H 0.06 1.46 8.12 -51.91 -0.42 1.04 15 25 H 0.06 1.46 8.12 -51.91 -0.42 1.04 15 26 H 0.19 1.78 7.61 -52.49 -0.40 1.38 15 27 H 0.42 1.08 9.11 45.56 0.42 1.50 15 28 H 0.17 2.09 7.32 -52.49 -0.38 1.70 15 LS Contribution 284.05 15.07 4.28 4.28 Total: -1.00 -30.19 284.05 -6.37 -36.56 By element: Atomic # 1 Polarization: -1.61 SS G_CDS: -0.75 Total: -2.36 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -1.79 Total: -4.96 kcal Atomic # 7 Polarization: -31.52 SS G_CDS: 0.78 Total: -30.73 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -1.86 Total: -17.67 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.02 Total: -0.32 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.19 -6.37 -36.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068441.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.387 kcal (2) G-P(sol) polarization free energy of solvation -30.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds