Wall clock time and date at job start Tue Mar 31 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99583 * 2 1 4 4 H 1.48505 * 109.47212 * 239.99436 * 3 2 1 5 5 H 1.48501 * 109.47400 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47336 * 119.99764 * 3 2 1 7 7 C 1.37873 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00068 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00049 * 0.02562 * 7 2 1 10 10 S 1.81398 * 109.47379 * 179.97438 * 9 7 2 11 11 C 1.81398 * 103.00006 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47596 * 304.99837 * 11 10 9 13 13 C 1.53011 * 109.46913 * 185.00261 * 11 10 9 14 14 C 1.50697 * 109.47155 * 64.99967 * 13 11 10 15 15 C 1.38244 * 119.97201 * 89.99868 * 14 13 11 16 16 C 1.38205 * 120.02298 * 179.97438 * 15 14 13 17 17 C 1.38459 * 119.97412 * 0.24026 * 16 15 14 18 18 F 1.35099 * 120.02759 * 179.72396 * 17 16 15 19 19 C 1.38466 * 119.94836 * 359.48301 * 17 16 15 20 20 C 1.38196 * 119.97140 * 0.53984 * 19 17 16 21 21 C 1.50699 * 109.47265 * 65.00504 * 11 10 9 22 22 O 1.20829 * 119.99674 * 250.00138 * 21 11 10 23 23 O 1.34226 * 120.00158 * 69.99491 * 21 11 10 24 24 H 0.97001 * 120.00212 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47421 * 59.99534 * 9 7 2 26 26 H 1.08999 * 109.47367 * 299.99710 * 9 7 2 27 27 H 1.08994 * 109.46802 * 305.00034 * 13 11 10 28 28 H 1.09000 * 109.46596 * 185.00075 * 13 11 10 29 29 H 1.07999 * 119.98898 * 359.97438 * 15 14 13 30 30 H 1.08002 * 120.00949 * 179.97438 * 16 15 14 31 31 H 1.07997 * 120.00962 * 180.25357 * 19 17 16 32 32 H 1.07999 * 119.98560 * 179.70313 * 20 19 17 33 33 H 0.96704 * 116.99570 * 180.02562 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 16 2.4300 -3.8779 0.0005 11 6 1.3517 -5.3366 0.0013 12 1 0.6620 -5.2783 0.8434 13 6 2.2043 -6.6009 0.1272 14 6 2.8912 -6.6121 1.4685 15 6 2.2726 -7.1995 2.5563 16 6 2.9018 -7.2109 3.7868 17 6 4.1500 -6.6292 3.9308 18 9 4.7636 -6.6348 5.1344 19 6 4.7711 -6.0462 2.8392 20 6 4.1398 -6.0357 1.6099 21 6 0.5699 -5.3841 -1.2861 22 8 -0.6200 -5.1745 -1.2783 23 8 1.1954 -5.6591 -2.4414 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6242 -2.5568 0.8903 27 1 2.9532 -6.6144 -0.6646 28 1 1.5659 -7.4799 0.0385 29 1 1.2973 -7.6498 2.4446 30 1 2.4182 -7.6695 4.6366 31 1 5.7465 -5.5959 2.9495 32 1 4.6219 -5.5768 0.7594 33 1 0.6520 -5.6781 -3.2411 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068639.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:06 Heat of formation + Delta-G solvation = -127.810080 kcal Electronic energy + Delta-G solvation = -19318.135159 eV Core-core repulsion = 15962.947836 eV Total energy + Delta-G solvation = -3355.187323 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.067 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.85021 -40.04936 -39.08721 -35.86855 -34.15370 -33.19834 -31.10149 -29.68040 -28.57655 -25.05154 -23.14411 -23.00811 -21.65003 -21.06858 -17.90726 -17.64159 -16.95236 -16.39201 -16.36145 -15.78891 -15.52081 -15.44344 -14.95897 -14.47093 -14.10786 -13.83484 -13.48360 -13.23022 -13.06755 -12.69389 -12.39830 -12.26925 -11.82403 -11.72841 -11.57563 -11.29759 -10.95424 -10.90012 -10.71673 -10.56165 -9.97997 -9.64428 -9.12437 -8.96227 -8.65840 -8.52622 -6.91572 -6.22677 -4.29251 1.14380 1.29171 1.86712 2.72600 3.17526 3.25373 3.29050 3.32384 3.56580 3.73320 4.29904 4.31481 4.63527 4.71117 4.87904 4.93745 5.13765 5.14628 5.23242 5.31063 5.54124 5.65386 5.86405 5.98742 6.07273 6.14931 6.28821 6.56739 6.67009 6.92660 7.00006 7.04775 7.68495 7.92890 8.08653 8.71939 9.34400 10.88169 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.013417 B = 0.005439 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.449015 B = 5146.843141 C = 6660.253780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.068 0.932 9 C 0.081 3.919 10 S -0.237 6.237 11 C -0.062 4.062 12 H 0.121 0.879 13 C -0.053 4.053 14 C -0.091 4.091 15 C -0.086 4.086 16 C -0.158 4.158 17 C 0.094 3.906 18 F -0.145 7.145 19 C -0.152 4.152 20 C -0.056 4.056 21 C 0.490 3.510 22 O -0.513 6.513 23 O -0.504 6.504 24 H 0.267 0.733 25 H 0.036 0.964 26 H 0.039 0.961 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.667 -15.721 1.704 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.086 0.914 9 C -0.066 4.066 10 S -0.009 6.009 11 C -0.191 4.191 12 H 0.139 0.861 13 C -0.091 4.091 14 C -0.091 4.091 15 C -0.104 4.104 16 C -0.176 4.176 17 C 0.075 3.925 18 F -0.123 7.123 19 C -0.171 4.171 20 C -0.074 4.074 21 C 0.329 3.671 22 O -0.401 6.401 23 O -0.315 6.315 24 H 0.077 0.923 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.114 0.886 28 H 0.103 0.897 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 6.557 -15.505 2.128 16.968 hybrid contribution -1.368 1.070 -0.210 1.750 sum 5.189 -14.435 1.918 15.458 Atomic orbital electron populations 1.69961 1.06163 1.27582 1.48884 1.24971 0.94971 0.99302 0.94492 0.86400 0.79403 0.81797 0.78983 1.19853 1.20987 1.19832 1.20547 0.93326 0.88505 1.53224 0.91431 1.21221 0.93788 0.91034 1.00527 1.86795 1.17933 0.99046 1.97098 1.23082 1.01037 1.00887 0.94067 0.86101 1.20344 0.98719 0.94580 0.95469 1.19708 0.95112 0.99125 0.95137 1.20875 0.99472 0.98596 0.91463 1.21032 0.94561 1.03020 0.99032 1.17741 0.92679 1.01325 0.80797 1.91478 1.82779 1.94840 1.43231 1.21128 1.01630 1.02076 0.92254 1.20969 0.93973 0.95312 0.97182 1.23257 0.86051 0.71966 0.85834 1.90747 1.16660 1.45360 1.87335 1.84518 1.46322 1.82722 1.17913 0.92311 0.94590 0.94259 0.88566 0.89741 0.85203 0.85041 0.84783 0.84425 0.73525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.79 16 3 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -14.38 9.13 -34.44 -0.31 -14.69 16 8 H 0.07 1.85 7.71 -52.48 -0.40 1.44 16 9 C 0.08 2.10 5.48 36.00 0.20 2.29 16 10 S -0.24 -4.75 19.27 -107.50 -2.07 -6.82 16 11 C -0.06 -0.99 2.68 -27.88 -0.07 -1.07 16 12 H 0.12 2.00 8.13 -51.92 -0.42 1.57 16 13 C -0.05 -0.64 4.63 -27.88 -0.13 -0.77 16 14 C -0.09 -1.11 4.85 -104.62 -0.51 -1.62 16 15 C -0.09 -0.97 9.70 -39.59 -0.38 -1.35 16 16 C -0.16 -1.82 10.03 -39.51 -0.40 -2.21 16 17 C 0.09 1.20 7.30 -39.42 -0.29 0.91 16 18 F -0.14 -1.92 17.27 2.25 0.04 -1.88 16 19 C -0.15 -1.90 10.03 -39.51 -0.40 -2.29 16 20 C -0.06 -0.71 8.56 -39.59 -0.34 -1.05 16 21 C 0.49 8.26 6.74 36.01 0.24 8.50 16 22 O -0.51 -10.32 17.85 -18.75 -0.33 -10.65 16 23 O -0.50 -6.83 13.11 -39.25 -0.51 -7.34 16 24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.04 1.00 8.00 -51.92 -0.42 0.59 16 26 H 0.04 1.08 8.14 -51.92 -0.42 0.65 16 27 H 0.10 1.12 8.03 -51.93 -0.42 0.70 16 28 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 29 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.14 1.70 7.77 -52.49 -0.41 1.30 16 33 H 0.41 3.73 9.10 45.56 0.41 4.14 16 LS Contribution 313.69 15.07 4.73 4.73 Total: -1.00 -32.29 313.69 -7.82 -40.11 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -2.90 Total: 2.56 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -2.49 Total: -11.57 kcal Atomic # 7 Polarization: -26.09 SS G_CDS: 0.74 Total: -25.35 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.85 Total: -18.00 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -4.75 SS G_CDS: -2.07 Total: -6.82 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.29 -7.82 -40.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068639.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.700 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds