Wall clock time and date at job start Tue Mar 31 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99583 * 2 1 4 4 H 1.48505 * 109.47212 * 239.99436 * 3 2 1 5 5 H 1.48501 * 109.47400 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47336 * 119.99764 * 3 2 1 7 7 C 1.37873 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00068 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00049 * 0.02562 * 7 2 1 10 10 S 1.81398 * 109.47379 * 179.97438 * 9 7 2 11 11 C 1.81398 * 103.00006 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47596 * 304.99837 * 11 10 9 13 13 C 1.53011 * 109.46913 * 185.00261 * 11 10 9 14 14 C 1.50697 * 109.47155 * 64.99967 * 13 11 10 15 15 C 1.38244 * 119.97201 * 89.99868 * 14 13 11 16 16 C 1.38205 * 120.02298 * 179.97438 * 15 14 13 17 17 C 1.38459 * 119.97412 * 0.24026 * 16 15 14 18 18 F 1.35099 * 120.02759 * 179.72396 * 17 16 15 19 19 C 1.38466 * 119.94836 * 359.48301 * 17 16 15 20 20 C 1.38196 * 119.97140 * 0.53984 * 19 17 16 21 21 C 1.50699 * 109.47265 * 65.00504 * 11 10 9 22 22 O 1.20829 * 119.99674 * 250.00138 * 21 11 10 23 23 O 1.34226 * 120.00158 * 69.99491 * 21 11 10 24 24 H 0.97001 * 120.00212 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47421 * 59.99534 * 9 7 2 26 26 H 1.08999 * 109.47367 * 299.99710 * 9 7 2 27 27 H 1.08994 * 109.46802 * 305.00034 * 13 11 10 28 28 H 1.09000 * 109.46596 * 185.00075 * 13 11 10 29 29 H 1.07999 * 119.98898 * 359.97438 * 15 14 13 30 30 H 1.08002 * 120.00949 * 179.97438 * 16 15 14 31 31 H 1.07997 * 120.00962 * 180.25357 * 19 17 16 32 32 H 1.07999 * 119.98560 * 179.70313 * 20 19 17 33 33 H 0.96704 * 116.99570 * 180.02562 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 16 2.4300 -3.8779 0.0005 11 6 1.3517 -5.3366 0.0013 12 1 0.6620 -5.2783 0.8434 13 6 2.2043 -6.6009 0.1272 14 6 2.8912 -6.6121 1.4685 15 6 2.2726 -7.1995 2.5563 16 6 2.9018 -7.2109 3.7868 17 6 4.1500 -6.6292 3.9308 18 9 4.7636 -6.6348 5.1344 19 6 4.7711 -6.0462 2.8392 20 6 4.1398 -6.0357 1.6099 21 6 0.5699 -5.3841 -1.2861 22 8 -0.6200 -5.1745 -1.2783 23 8 1.1954 -5.6591 -2.4414 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6242 -2.5568 0.8903 27 1 2.9532 -6.6144 -0.6646 28 1 1.5659 -7.4799 0.0385 29 1 1.2973 -7.6498 2.4446 30 1 2.4182 -7.6695 4.6366 31 1 5.7465 -5.5959 2.9495 32 1 4.6219 -5.5768 0.7594 33 1 0.6520 -5.6781 -3.2411 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068639.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:06 Heat of formation + Delta-G solvation = -146.691647 kcal Electronic energy + Delta-G solvation = -19318.953926 eV Core-core repulsion = 15962.947836 eV Total energy + Delta-G solvation = -3356.006090 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.84479 -41.35590 -40.04900 -37.15695 -35.35320 -35.22066 -32.01355 -30.95445 -30.52181 -26.21429 -25.13723 -23.95812 -22.85596 -22.12949 -19.25312 -18.74687 -18.57057 -18.00185 -17.44421 -17.15292 -16.75780 -16.52515 -16.44128 -15.95547 -15.26305 -14.99931 -14.58026 -14.53871 -14.35910 -14.25240 -14.12971 -13.91758 -13.10327 -12.86935 -12.74541 -12.66599 -12.54726 -12.51285 -12.02758 -11.86082 -11.76628 -11.50628 -10.78615 -10.77380 -9.96556 -9.50680 -8.57006 -8.35596 -6.51069 0.17922 0.34830 0.43320 1.24737 1.39147 1.42171 1.51217 1.87194 2.02033 2.34380 2.65810 2.98898 3.36112 3.53436 3.76717 3.83703 4.02235 4.06650 4.27173 4.41697 4.47490 4.71521 4.83971 4.88371 4.89358 5.07288 5.13155 5.23771 5.34860 5.49939 5.52466 5.62785 5.81987 6.00393 6.57631 6.90145 7.18232 8.76321 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.013417 B = 0.005439 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.449015 B = 5146.843141 C = 6660.253780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.013 3.987 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.536 4.536 8 H 0.070 0.930 9 C 0.076 3.924 10 S -0.210 6.210 11 C -0.057 4.057 12 H 0.116 0.884 13 C -0.044 4.044 14 C -0.100 4.100 15 C -0.084 4.084 16 C -0.158 4.158 17 C 0.076 3.924 18 F -0.151 7.151 19 C -0.160 4.160 20 C -0.068 4.068 21 C 0.495 3.505 22 O -0.551 6.551 23 O -0.492 6.492 24 H 0.270 0.730 25 H 0.004 0.996 26 H 0.009 0.991 27 H 0.105 0.895 28 H 0.118 0.882 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.679 -16.647 1.532 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.575 4.575 8 H 0.088 0.912 9 C -0.072 4.072 10 S 0.020 5.980 11 C -0.187 4.187 12 H 0.134 0.866 13 C -0.081 4.081 14 C -0.100 4.100 15 C -0.102 4.102 16 C -0.177 4.177 17 C 0.057 3.943 18 F -0.130 7.130 19 C -0.179 4.179 20 C -0.087 4.087 21 C 0.335 3.665 22 O -0.443 6.443 23 O -0.305 6.305 24 H 0.079 0.921 25 H 0.022 0.978 26 H 0.028 0.972 27 H 0.123 0.877 28 H 0.136 0.864 29 H 0.174 0.826 30 H 0.169 0.831 31 H 0.161 0.839 32 H 0.155 0.845 33 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 7.596 -16.446 1.932 18.218 hybrid contribution -1.681 1.213 -0.182 2.081 sum 5.915 -15.233 1.750 16.434 Atomic orbital electron populations 1.70090 1.07955 1.28684 1.49793 1.25982 0.95812 1.03331 0.93680 0.85311 0.78173 0.76957 0.79530 1.18753 1.20366 1.18876 1.20924 0.93564 0.89809 1.53195 0.91237 1.20866 0.94642 0.94121 0.97526 1.86439 1.16336 0.98186 1.97068 1.23223 1.00935 1.00562 0.93957 0.86585 1.20391 0.98786 0.93257 0.95704 1.19822 0.95095 0.99511 0.95611 1.21185 1.00293 0.97898 0.90851 1.21322 0.94046 1.02385 0.99954 1.17995 0.93442 1.02122 0.80697 1.91460 1.82992 1.94963 1.43562 1.21287 1.02217 1.02171 0.92253 1.21065 0.94519 0.95821 0.97273 1.23298 0.85449 0.71038 0.86733 1.90741 1.18386 1.47208 1.87951 1.84464 1.46255 1.81714 1.18027 0.92099 0.97794 0.97221 0.87677 0.86401 0.82649 0.83061 0.83873 0.84461 0.71079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.73 13.29 21.45 0.28 -55.45 16 2 C 0.01 0.73 5.46 84.65 0.46 1.19 16 3 Si 0.98 43.52 29.54 68.60 2.03 45.55 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 6 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.54 -30.35 9.13 25.60 0.23 -30.12 16 8 H 0.07 3.81 7.71 -2.91 -0.02 3.79 16 9 C 0.08 4.06 5.48 71.24 0.39 4.45 16 10 S -0.21 -8.30 19.27 -56.49 -1.09 -9.39 16 11 C -0.06 -1.77 2.68 29.85 0.08 -1.69 16 12 H 0.12 3.74 8.13 -2.39 -0.02 3.73 16 13 C -0.04 -0.93 4.63 29.85 0.14 -0.79 16 14 C -0.10 -2.24 4.85 -19.86 -0.10 -2.33 16 15 C -0.08 -1.68 9.70 22.26 0.22 -1.46 16 16 C -0.16 -3.32 10.03 22.31 0.22 -3.10 16 17 C 0.08 1.87 7.30 22.38 0.16 2.03 16 18 F -0.15 -3.89 17.27 44.97 0.78 -3.11 16 19 C -0.16 -3.84 10.03 22.31 0.22 -3.62 16 20 C -0.07 -1.64 8.56 22.26 0.19 -1.45 16 21 C 0.49 16.14 6.74 71.24 0.48 16.62 16 22 O -0.55 -22.20 17.85 21.96 0.39 -21.81 16 23 O -0.49 -12.29 13.11 -51.37 -0.67 -12.97 16 24 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 25 H 0.00 0.22 8.00 -2.39 -0.02 0.20 16 26 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.10 2.10 8.03 -2.39 -0.02 2.08 16 28 H 0.12 1.83 8.08 -2.39 -0.02 1.81 16 29 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 30 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 31 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 32 H 0.14 3.22 7.77 -2.91 -0.02 3.19 16 33 H 0.43 6.91 9.10 -74.05 -0.67 6.24 16 Total: -1.00 -71.08 313.69 4.89 -66.20 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.46 Total: 11.25 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 2.71 Total: -20.27 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.28 Total: -55.45 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.28 Total: -34.77 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.78 Total: -3.11 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.09 Total: -9.39 kcal Total: -71.08 4.89 -66.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068639.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.495 kcal (2) G-P(sol) polarization free energy of solvation -71.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds