Wall clock time and date at job start Tue Mar 31 2020 06:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 13 13 O 1.21285 * 120.00039 * 120.00069 * 12 2 1 14 14 N 1.34780 * 120.00249 * 299.99993 * 12 2 1 15 15 C 1.38995 * 120.00121 * 180.02562 * 14 12 2 16 16 N 1.29622 * 124.94419 * 179.72567 * 15 14 12 17 17 C 1.31991 * 116.92071 * 179.76914 * 16 15 14 18 18 C 1.50697 * 122.71717 * 180.22009 * 17 16 15 19 19 C 1.50693 * 109.47878 * 305.31531 * 18 17 16 20 20 O 1.20831 * 119.99427 * 359.97438 * 19 18 17 21 21 O 1.34221 * 120.00519 * 180.02562 * 19 18 17 22 22 C 1.33440 * 114.56516 * 0.51754 * 17 16 15 23 23 S 1.70968 * 124.94565 * 0.02562 * 15 14 12 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 28 28 H 0.96998 * 119.99818 * 0.02562 * 14 12 2 29 29 H 1.09001 * 109.47124 * 65.32169 * 18 17 16 30 30 H 1.09006 * 109.47089 * 185.31320 * 18 17 16 31 31 H 0.96707 * 117.00264 * 180.02562 * 21 19 18 32 32 H 1.07998 * 125.97150 * 179.73029 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2499 2.4546 15 6 2.1705 -0.9048 3.5895 16 7 1.9213 -0.5434 4.8092 17 6 2.4396 -1.2853 5.7700 18 6 2.2293 -0.9876 7.2322 19 6 2.6517 0.4295 7.5224 20 8 3.0802 1.1262 6.6330 21 8 2.5531 0.9175 8.7688 22 6 3.1702 -2.3166 5.3417 23 16 3.1586 -2.2999 3.5800 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 0.7089 1.1612 -3.4844 28 1 1.1488 0.5386 2.5436 29 1 1.1750 -1.1105 7.4800 30 1 2.8260 -1.6747 7.8324 31 1 2.8359 1.8320 8.9060 32 1 3.6795 -3.0358 5.9659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604060489.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:45 Heat of formation + Delta-G solvation = -82.620888 kcal Electronic energy + Delta-G solvation = -19447.744401 eV Core-core repulsion = 16114.436590 eV Total energy + Delta-G solvation = -3333.307811 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.55708 -39.82132 -38.87459 -36.15239 -34.57441 -34.01067 -31.74531 -30.51618 -28.23774 -25.30000 -24.76531 -22.96613 -21.79448 -20.72157 -19.15395 -18.15446 -17.78140 -16.92762 -16.47312 -16.30514 -15.94825 -15.49947 -15.11672 -14.74790 -14.18144 -13.86558 -13.36399 -13.08345 -12.89593 -12.77255 -12.61523 -11.80842 -11.58015 -11.34092 -11.02900 -10.88024 -10.78160 -10.67596 -10.49767 -10.37821 -10.10038 -9.44694 -9.16602 -9.03811 -8.91038 -8.49442 -7.96410 -6.15579 -4.20880 1.01332 1.45894 2.11301 2.17608 2.57660 3.11555 3.13529 3.30350 3.33478 3.39499 3.49511 4.34398 4.41627 4.85349 5.15654 5.18067 5.25374 5.36238 5.63642 5.78105 6.03931 6.39499 6.45725 6.55662 6.65462 6.71381 7.21258 7.40743 7.64608 7.82722 7.89130 8.03558 8.13379 8.58384 8.87268 9.45357 10.91913 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.035516 B = 0.003753 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.183088 B = 7459.780788 C = 7953.265066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.040 3.960 3 H 0.063 0.937 4 C -0.510 4.510 5 H 0.077 0.923 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.905 3.095 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.518 3.482 13 O -0.504 6.504 14 N -0.633 5.633 15 C 0.264 3.736 16 N -0.511 5.511 17 C 0.094 3.906 18 C -0.030 4.030 19 C 0.476 3.524 20 O -0.490 6.490 21 O -0.524 6.524 22 C -0.331 4.331 23 S 0.247 5.753 24 H 0.035 0.965 25 H 0.099 0.901 26 H 0.015 0.985 27 H 0.264 0.736 28 H 0.421 0.579 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.409 0.591 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.089 -2.794 18.790 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.018 3.982 3 H 0.081 0.919 4 C -0.548 4.548 5 H 0.095 0.905 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.732 3.268 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.308 3.692 13 O -0.377 6.377 14 N -0.283 5.283 15 C -0.104 4.104 16 N -0.234 5.234 17 C -0.040 4.040 18 C -0.070 4.070 19 C 0.317 3.683 20 O -0.375 6.375 21 O -0.337 6.337 22 C -0.472 4.472 23 S 0.498 5.502 24 H 0.054 0.946 25 H 0.118 0.882 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.260 0.740 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.268 0.732 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.601 -3.718 17.345 17.812 hybrid contribution -0.028 0.971 0.330 1.025 sum 1.573 -2.748 17.675 17.956 Atomic orbital electron populations 1.21816 0.95780 1.00334 1.01572 1.18935 0.94602 0.97096 0.87522 0.91923 1.21030 1.31909 1.13235 0.88645 0.90518 1.24939 0.94845 0.94977 0.99208 1.69844 1.36471 1.22822 1.24043 0.86438 0.79337 0.79684 0.81324 1.20060 1.21273 1.20048 1.22833 0.78230 0.84503 0.83598 1.90472 1.36656 1.26151 1.84378 1.43701 1.51225 1.30990 1.02385 1.23606 0.99419 0.97623 0.89702 1.66070 1.28575 1.31740 0.97028 1.18872 0.98478 0.92945 0.93713 1.19722 1.05148 0.90731 0.91429 1.23213 0.75183 0.90347 0.79604 1.90794 1.40846 1.59748 1.46141 1.84503 1.80490 1.35937 1.32725 1.27166 1.11144 1.06815 1.02110 1.85083 1.45225 1.22707 0.97222 0.94568 0.88217 0.96567 0.92610 0.74008 0.86298 0.86224 0.73238 0.81111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.87 37.16 0.33 -2.66 16 2 C 0.04 0.93 2.64 -92.93 -0.25 0.69 16 3 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 4 C -0.51 -13.70 8.37 -34.44 -0.29 -13.99 16 5 H 0.08 2.15 6.75 -52.49 -0.35 1.79 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -24.12 11.32 55.43 0.63 -23.49 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 12 C 0.52 11.25 7.11 -10.98 -0.08 11.18 16 13 O -0.50 -11.87 12.93 5.55 0.07 -11.79 16 14 N -0.63 -11.80 5.30 -13.07 -0.07 -11.87 16 15 C 0.26 4.83 8.19 -87.36 -0.72 4.11 16 16 N -0.51 -8.84 9.71 -11.28 -0.11 -8.95 16 17 C 0.09 1.33 5.64 -84.20 -0.47 0.85 16 18 C -0.03 -0.30 6.30 -29.04 -0.18 -0.48 16 19 C 0.48 5.56 8.29 36.00 0.30 5.86 16 20 O -0.49 -7.99 16.19 -18.75 -0.30 -8.29 16 21 O -0.52 -4.34 13.42 -39.23 -0.53 -4.87 16 22 C -0.33 -4.35 11.05 29.05 0.32 -4.03 16 23 S 0.25 4.07 20.22 -107.50 -2.17 1.90 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.10 2.40 6.07 -51.93 -0.32 2.09 16 26 H 0.02 0.29 7.56 -51.93 -0.39 -0.11 16 27 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.42 7.00 8.24 -40.82 -0.34 6.67 16 29 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.12 0.76 8.03 -51.93 -0.42 0.34 16 31 H 0.41 1.87 9.10 45.56 0.41 2.28 16 32 H 0.17 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 298.27 15.07 4.49 4.49 Total: -1.00 -32.80 298.27 -6.37 -39.16 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -2.23 Total: 4.61 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -1.13 Total: 3.09 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.45 Total: -44.31 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.76 Total: -24.96 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -2.17 Total: 1.90 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.80 -6.37 -39.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060489.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.457 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds