Wall clock time and date at job start Tue Mar 31 2020 05:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46997 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47438 * 119.99776 * 8 6 4 11 11 H 1.48494 * 109.47197 * 239.99736 * 8 6 4 12 12 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 13 13 O 1.20819 * 120.00480 * 239.99936 * 12 2 1 14 14 O 1.34231 * 119.99710 * 60.00260 * 12 2 1 15 15 C 1.45200 * 117.00102 * 179.97438 * 14 12 2 16 16 H 1.08999 * 109.46870 * 30.00237 * 15 14 12 17 17 C 1.50697 * 109.47338 * 270.00227 * 15 14 12 18 18 O 1.20829 * 119.99894 * 359.97438 * 17 15 14 19 19 O 1.34221 * 120.00346 * 179.97438 * 17 15 14 20 20 C 1.50698 * 109.47146 * 150.00233 * 15 14 12 21 21 C 1.38420 * 122.53747 * 219.74127 * 20 15 14 22 22 C 1.33397 * 114.92023 * 179.75982 * 21 20 15 23 23 S 1.75886 * 109.59061 * 0.47637 * 22 21 20 24 24 C 1.33390 * 122.54027 * 40.02586 * 20 15 14 25 25 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 28 28 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 29 29 H 0.96696 * 117.00789 * 180.02562 * 19 17 15 30 30 H 1.08002 * 122.54588 * 359.97438 * 21 20 15 31 31 H 1.08002 * 125.20292 * 180.20706 * 22 21 20 32 32 H 1.07995 * 125.20494 * 359.97438 * 24 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.1473 -2.2863 3.6039 10 1 3.1471 -0.1857 4.8162 11 1 1.1677 -1.5865 4.8165 12 6 2.0324 -0.7105 -1.2304 13 8 2.7270 -1.6928 -1.1196 14 8 1.7081 -0.2519 -2.4495 15 6 2.2277 -0.9858 -3.5896 16 1 2.3419 -2.0367 -3.3238 17 6 3.5673 -0.4190 -3.9838 18 8 4.0358 0.5086 -3.3674 19 8 4.2400 -0.9447 -5.0195 20 6 1.2697 -0.8613 -4.7462 21 6 0.9804 -1.9194 -5.5904 22 6 0.1081 -1.6419 -6.5608 23 16 -0.3887 0.0413 -6.4436 24 6 0.6405 0.2783 -5.0372 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7094 1.1619 3.4844 29 1 5.0952 -0.5479 -5.2344 30 1 1.4244 -2.8966 -5.4705 31 1 -0.2367 -2.3424 -7.3071 32 1 0.7463 1.2046 -4.4922 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604061063.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:30 Heat of formation + Delta-G solvation = -140.716677 kcal Electronic energy + Delta-G solvation = -20118.397140 eV Core-core repulsion = 16750.277355 eV Total energy + Delta-G solvation = -3368.119785 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.060 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.77950 -39.32687 -38.11694 -36.22623 -35.55653 -33.93505 -31.09292 -30.29645 -28.13847 -25.22877 -23.85180 -23.51050 -21.58432 -19.83318 -19.17261 -18.09846 -17.85909 -17.16852 -16.68457 -16.12075 -15.98796 -15.40713 -14.85835 -14.53197 -14.07084 -13.40908 -13.18513 -12.92357 -12.82527 -12.62929 -12.52041 -11.99777 -11.61254 -11.48938 -11.15975 -11.07487 -10.91714 -10.79422 -10.72437 -10.35897 -10.19907 -10.07880 -9.29240 -9.06084 -8.94550 -8.58311 -8.46760 -6.11830 -4.17418 0.84663 1.47584 1.80087 2.16626 2.42330 2.60382 3.21160 3.28997 3.36327 3.43690 3.65928 4.40436 4.62666 4.88138 5.00309 5.19650 5.22097 5.27671 5.48142 5.77420 5.91769 6.15870 6.26730 6.44787 6.64128 6.80725 6.83349 7.01689 7.40855 7.71787 7.85513 7.92560 8.10503 8.68960 8.90792 9.48090 10.95691 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.024610 B = 0.004538 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.469011 B = 6168.952653 C = 6759.643791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.061 3.939 3 H 0.068 0.932 4 C -0.513 4.513 5 H 0.076 0.924 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.905 3.095 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.470 3.530 13 O -0.512 6.512 14 O -0.330 6.330 15 C 0.157 3.843 16 H 0.127 0.873 17 C 0.472 3.528 18 O -0.491 6.491 19 O -0.509 6.509 20 C -0.109 4.109 21 C -0.112 4.112 22 C -0.216 4.216 23 S 0.107 5.893 24 C -0.170 4.170 25 H 0.024 0.976 26 H 0.032 0.968 27 H 0.097 0.903 28 H 0.263 0.737 29 H 0.410 0.590 30 H 0.147 0.853 31 H 0.168 0.832 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.618 -2.488 -18.885 19.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.042 3.958 3 H 0.086 0.914 4 C -0.551 4.551 5 H 0.095 0.905 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.732 3.268 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.315 3.685 13 O -0.398 6.398 14 O -0.248 6.248 15 C 0.097 3.903 16 H 0.145 0.855 17 C 0.312 3.688 18 O -0.377 6.377 19 O -0.322 6.322 20 C -0.122 4.122 21 C -0.142 4.142 22 C -0.351 4.351 23 S 0.371 5.629 24 C -0.306 4.306 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.269 0.731 30 H 0.164 0.836 31 H 0.185 0.815 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.729 -1.669 -19.304 19.567 hybrid contribution 1.968 -1.115 1.479 2.703 sum -0.761 -2.784 -17.825 18.057 Atomic orbital electron populations 1.21752 0.95367 1.00178 1.01894 1.18822 0.94959 0.97144 0.84868 0.91405 1.21157 1.31983 1.13284 0.88649 0.90542 1.24931 0.94866 0.95013 0.99133 1.69883 1.36501 1.22745 1.23826 0.86312 0.78655 0.79707 0.82090 1.19500 1.20854 1.20851 1.25657 0.76272 0.82998 0.83574 1.90499 1.36361 1.26782 1.86119 1.86867 1.68198 1.55409 1.14375 1.20051 0.86234 0.98861 0.85139 0.85525 1.23554 0.87037 0.80975 0.77262 1.90777 1.68080 1.27164 1.51642 1.84492 1.37054 1.61885 1.48740 1.18244 1.01820 0.94312 0.97777 1.19919 0.99275 0.99917 0.95070 1.25518 1.05008 0.99359 1.05207 1.84260 1.45089 1.06811 1.26731 1.25688 1.01398 1.02869 1.00602 0.95691 0.94847 0.88410 0.92690 0.73130 0.83578 0.81453 0.80874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.90 37.16 0.33 -2.83 16 2 C 0.06 1.57 2.74 -92.92 -0.25 1.32 16 3 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 4 C -0.51 -14.49 8.37 -34.44 -0.29 -14.77 16 5 H 0.08 2.25 6.76 -52.49 -0.35 1.89 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.86 11.32 55.43 0.63 -24.23 16 8 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.47 11.21 7.17 36.00 0.26 11.47 16 13 O -0.51 -13.00 14.68 -18.74 -0.28 -13.28 16 14 O -0.33 -6.71 8.94 -45.92 -0.41 -7.12 16 15 C 0.16 2.62 2.76 -29.04 -0.08 2.54 16 16 H 0.13 2.07 7.10 -51.93 -0.37 1.70 16 17 C 0.47 7.77 7.66 36.00 0.28 8.04 16 18 O -0.49 -9.84 17.22 -25.41 -0.44 -10.27 16 19 O -0.51 -6.12 13.34 -39.23 -0.52 -6.65 16 20 C -0.11 -1.49 4.80 -106.25 -0.51 -2.00 16 21 C -0.11 -1.25 9.95 -41.21 -0.41 -1.66 16 22 C -0.22 -2.06 11.23 29.04 0.33 -1.73 16 23 S 0.11 1.08 23.34 -107.50 -2.51 -1.43 16 24 C -0.17 -2.19 10.57 29.04 0.31 -1.88 16 25 H 0.02 0.51 8.11 -51.93 -0.42 0.09 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.41 3.06 9.10 45.56 0.41 3.47 16 30 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.17 2.25 8.05 -52.49 -0.42 1.83 16 LS Contribution 305.07 15.07 4.60 4.60 Total: -1.00 -32.71 305.07 -6.39 -39.09 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -2.29 Total: 2.67 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -0.14 Total: 0.10 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.63 Total: -24.23 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -1.65 Total: -37.32 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.51 Total: -1.43 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.71 -6.39 -39.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061063.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.626 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds