Wall clock time and date at job start Tue Mar 31 2020 05:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47356 * 2 1 4 4 C 1.50697 * 109.47069 * 119.99597 * 2 1 3 5 5 H 1.08006 * 120.00096 * 119.99564 * 4 2 1 6 6 C 1.37878 * 120.00328 * 300.00357 * 4 2 1 7 7 N 1.31519 * 119.99775 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00388 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46757 * 59.99977 * 8 6 4 10 10 H 1.48498 * 109.47237 * 179.97438 * 8 6 4 11 11 H 1.48490 * 109.47464 * 300.00096 * 8 6 4 12 12 C 1.50698 * 109.47217 * 239.99516 * 2 1 3 13 13 O 1.20819 * 120.00184 * 239.99921 * 12 2 1 14 14 O 1.34231 * 120.00100 * 60.00293 * 12 2 1 15 15 C 1.45194 * 117.00361 * 179.97438 * 14 12 2 16 16 H 1.09001 * 109.47073 * 330.00080 * 15 14 12 17 17 C 1.50698 * 109.47449 * 89.99690 * 15 14 12 18 18 O 1.20826 * 119.99609 * 5.00742 * 17 15 14 19 19 O 1.34227 * 120.00252 * 184.99968 * 17 15 14 20 20 C 1.50706 * 109.47297 * 210.00209 * 15 14 12 21 21 C 1.38424 * 122.53801 * 144.73724 * 20 15 14 22 22 C 1.33399 * 114.91435 * 179.76034 * 21 20 15 23 23 S 1.75881 * 109.59510 * 0.47417 * 22 21 20 24 24 C 1.33387 * 122.53754 * 325.01978 * 20 15 14 25 25 H 1.09005 * 109.47062 * 60.00215 * 1 2 3 26 26 H 1.09000 * 109.47356 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47457 * 300.00384 * 1 2 3 28 28 H 0.96994 * 120.00439 * 179.97438 * 7 6 4 29 29 H 0.96705 * 117.00077 * 179.97438 * 19 17 15 30 30 H 1.07988 * 122.54208 * 359.97438 * 21 20 15 31 31 H 1.07996 * 125.19950 * 180.20989 * 22 21 20 32 32 H 1.08003 * 125.20174 * 359.97438 * 24 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3212 -1.1201 4.0080 9 1 3.8063 -1.1206 4.0082 10 1 1.8268 -0.4196 5.2205 11 1 1.8258 -2.5200 4.0079 12 6 2.0324 -0.7105 -1.2304 13 8 2.7270 -1.6928 -1.1195 14 8 1.7082 -0.2520 -2.4496 15 6 2.2278 -0.9859 -3.5896 16 1 3.1808 -1.4432 -3.3235 17 6 1.2478 -2.0606 -3.9842 18 8 0.1782 -2.1368 -3.4274 19 8 1.5632 -2.9330 -4.9544 20 6 2.4295 -0.0407 -4.7459 21 6 3.4748 -0.1748 -5.6435 22 6 3.5055 0.7426 -6.6114 23 16 2.1651 1.8625 -6.4054 24 6 1.6176 0.9916 -4.9788 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.7087 1.1616 3.4843 29 1 0.9026 -3.6048 -5.1724 30 1 4.2077 -0.9643 -5.5679 31 1 4.2434 0.7926 -7.3985 32 1 0.7555 1.2525 -4.3828 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604061064.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:32 Heat of formation + Delta-G solvation = -140.723127 kcal Electronic energy + Delta-G solvation = -20137.874845 eV Core-core repulsion = 16769.754780 eV Total energy + Delta-G solvation = -3368.120065 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.060 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.77478 -39.32641 -38.11885 -36.21729 -35.56252 -33.92875 -31.08389 -30.27720 -28.16302 -25.20721 -23.85643 -23.46675 -21.61198 -19.81388 -19.14011 -18.12446 -17.85403 -17.09625 -16.80689 -16.10884 -15.97659 -15.39968 -14.76640 -14.52193 -14.08985 -13.52154 -13.15131 -12.91719 -12.82222 -12.72734 -12.43639 -11.86411 -11.65804 -11.48944 -11.12773 -11.05078 -10.92072 -10.80771 -10.71019 -10.36289 -10.17930 -10.07907 -9.29318 -9.07328 -8.94904 -8.58337 -8.45661 -6.11470 -4.17398 0.84532 1.47281 1.79755 2.17010 2.43340 2.61072 3.20344 3.32612 3.35266 3.40006 3.62967 4.40206 4.64105 4.88837 5.01089 5.20653 5.21840 5.27702 5.48530 5.77244 5.91566 6.15864 6.26902 6.45700 6.68086 6.85240 6.87042 7.03639 7.43116 7.73765 7.86558 7.92736 8.11268 8.68017 8.89878 9.47946 10.95844 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.024647 B = 0.004468 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.756769 B = 6265.901643 C = 6683.093840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.063 3.937 3 H 0.067 0.933 4 C -0.515 4.515 5 H 0.075 0.925 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.906 3.094 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.469 3.531 13 O -0.512 6.512 14 O -0.331 6.331 15 C 0.158 3.842 16 H 0.127 0.873 17 C 0.472 3.528 18 O -0.489 6.489 19 O -0.510 6.510 20 C -0.112 4.112 21 C -0.112 4.112 22 C -0.216 4.216 23 S 0.107 5.893 24 C -0.168 4.168 25 H 0.024 0.976 26 H 0.033 0.967 27 H 0.096 0.904 28 H 0.264 0.736 29 H 0.410 0.590 30 H 0.147 0.853 31 H 0.168 0.832 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.437 0.310 -18.731 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.044 3.956 3 H 0.084 0.916 4 C -0.553 4.553 5 H 0.093 0.907 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.734 3.266 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.314 3.686 13 O -0.398 6.398 14 O -0.249 6.249 15 C 0.098 3.902 16 H 0.144 0.856 17 C 0.311 3.689 18 O -0.375 6.375 19 O -0.323 6.323 20 C -0.124 4.124 21 C -0.142 4.142 22 C -0.352 4.352 23 S 0.371 5.629 24 C -0.304 4.304 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.115 0.885 28 H 0.074 0.926 29 H 0.269 0.731 30 H 0.165 0.835 31 H 0.185 0.815 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.058 1.699 -19.117 19.302 hybrid contribution 0.396 -2.285 1.415 2.717 sum 2.453 -0.586 -17.701 17.880 Atomic orbital electron populations 1.21725 0.95188 1.00376 1.01708 1.18809 0.95087 0.96938 0.84799 0.91555 1.21074 1.32187 1.13329 0.88686 0.90670 1.24927 0.94842 0.95003 0.99106 1.69869 1.36310 1.22712 1.24040 0.86412 0.79263 0.79686 0.81257 1.20054 1.21168 1.20072 1.25692 0.75960 0.83357 0.83593 1.90500 1.36460 1.26692 1.86131 1.86857 1.70527 1.53097 1.14376 1.20035 0.96485 0.88583 0.85138 0.85591 1.23544 0.87287 0.81352 0.76668 1.90774 1.24097 1.71098 1.51528 1.84491 1.51411 1.43098 1.53252 1.18260 0.98089 0.98419 0.97668 1.19915 0.98891 1.00833 0.94563 1.25520 1.04074 1.00487 1.05074 1.84272 1.23193 1.31157 1.24315 1.25714 1.04838 0.99040 1.00759 0.95694 0.94781 0.88517 0.92576 0.73126 0.83538 0.81451 0.80711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 8.90 37.16 0.33 -2.91 16 2 C 0.06 1.61 2.74 -92.93 -0.25 1.35 16 3 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 4 C -0.51 -14.51 8.37 -34.44 -0.29 -14.80 16 5 H 0.08 2.20 6.76 -52.48 -0.35 1.84 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.82 11.32 55.43 0.63 -24.19 16 8 Si 0.91 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.47 11.15 7.22 36.00 0.26 11.41 16 13 O -0.51 -12.96 14.68 -18.74 -0.28 -13.23 16 14 O -0.33 -6.69 8.79 -45.90 -0.40 -7.09 16 15 C 0.16 2.63 2.77 -29.03 -0.08 2.55 16 16 H 0.13 2.06 7.12 -51.93 -0.37 1.69 16 17 C 0.47 7.79 7.61 36.00 0.27 8.07 16 18 O -0.49 -9.78 17.27 -25.39 -0.44 -10.22 16 19 O -0.51 -6.19 13.41 -39.25 -0.53 -6.71 16 20 C -0.11 -1.53 4.89 -106.25 -0.52 -2.05 16 21 C -0.11 -1.25 9.96 -41.20 -0.41 -1.66 16 22 C -0.22 -2.06 11.23 29.04 0.33 -1.73 16 23 S 0.11 1.08 23.34 -107.50 -2.51 -1.43 16 24 C -0.17 -2.18 10.52 29.04 0.31 -1.87 16 25 H 0.02 0.54 8.11 -51.93 -0.42 0.12 16 26 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.10 2.51 6.07 -51.93 -0.32 2.20 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.41 3.10 9.10 45.56 0.41 3.52 16 30 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.18 2.31 7.97 -52.48 -0.42 1.89 16 LS Contribution 305.03 15.07 4.60 4.60 Total: -1.00 -32.54 305.03 -6.39 -38.93 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -2.29 Total: 2.85 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -0.15 Total: -0.02 kcal Atomic # 7 Polarization: -24.82 SS G_CDS: 0.63 Total: -24.19 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -1.64 Total: -37.25 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.51 Total: -1.43 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.54 -6.39 -38.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061064.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.795 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds