Wall clock time and date at job start Tue Mar 31 2020 06:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00258 * 2 1 4 4 O 1.21273 * 119.99743 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.00260 * 0.28130 * 3 2 1 6 6 C 1.52996 * 109.47491 * 179.72352 * 5 3 2 7 7 C 1.50702 * 109.47159 * 180.02562 * 6 5 3 8 8 H 1.08001 * 119.99769 * 359.97438 * 7 6 5 9 9 C 1.37869 * 119.99946 * 179.97438 * 7 6 5 10 10 N 1.31524 * 120.00200 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00110 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46837 * 90.00026 * 11 9 7 13 13 H 1.48500 * 109.47056 * 209.99733 * 11 9 7 14 14 H 1.48497 * 109.46899 * 330.00049 * 11 9 7 15 15 C 1.38377 * 119.99746 * 180.02562 * 2 1 3 16 16 N 1.30154 * 124.73459 * 180.02562 * 15 2 1 17 17 C 1.30815 * 117.30517 * 179.97438 * 16 15 2 18 18 C 1.36839 * 114.00205 * 0.02562 * 17 16 15 19 19 C 1.46134 * 126.12501 * 180.02562 * 18 17 16 20 20 O 1.21670 * 119.99627 * 359.97438 * 19 18 17 21 21 O 1.34927 * 119.99973 * 179.97438 * 19 18 17 22 22 S 1.70914 * 124.73701 * 359.71883 * 15 2 1 23 23 H 1.09001 * 109.47420 * 89.99103 * 1 2 3 24 24 H 1.08997 * 109.47484 * 209.99674 * 1 2 3 25 25 H 1.09001 * 109.46582 * 329.99538 * 1 2 3 26 26 H 1.09004 * 109.46801 * 299.72313 * 5 3 2 27 27 H 1.09000 * 109.46987 * 59.71544 * 5 3 2 28 28 H 1.09004 * 109.47066 * 299.99799 * 6 5 3 29 29 H 1.08994 * 109.46974 * 59.99651 * 6 5 3 30 30 H 0.96998 * 119.99790 * 180.02562 * 10 9 7 31 31 H 1.07990 * 122.99655 * 179.97438 * 17 16 15 32 32 H 0.96710 * 113.99768 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1671 -0.0005 5 6 1.3855 2.4723 0.0064 6 6 2.3798 3.6351 0.0120 7 6 1.6263 4.9403 0.0190 8 1 0.5463 4.9403 0.0191 9 6 2.3157 6.1342 0.0254 10 7 3.6310 6.1342 0.0259 11 14 1.3818 7.7520 0.0335 12 1 1.1339 8.1734 1.4357 13 1 2.1848 8.7905 -0.6609 14 1 0.0846 7.5781 -0.6679 15 6 2.1568 -1.1984 -0.0005 16 7 3.4539 -1.3059 -0.0001 17 6 3.9559 -2.5139 -0.0002 18 6 3.0152 -3.5076 -0.0013 19 6 3.2801 -4.9447 -0.0012 20 8 4.4267 -5.3519 -0.0004 21 8 2.2533 -5.8200 -0.0018 22 16 1.4273 -2.7441 0.0057 23 1 -0.3634 0.0002 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3632 0.8900 0.5139 26 1 0.7588 2.5344 -0.8833 27 1 0.7589 2.5257 0.8966 28 1 3.0065 3.5731 0.9017 29 1 3.0064 3.5817 -0.8782 30 1 4.1160 6.9742 0.0308 31 1 5.0180 -2.7094 -0.0003 32 1 2.5271 -6.7476 -0.0021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605958109.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:23 Heat of formation + Delta-G solvation = -71.103823 kcal Electronic energy + Delta-G solvation = -19135.141319 eV Core-core repulsion = 15802.332925 eV Total energy + Delta-G solvation = -3332.808394 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.78737 -40.24598 -38.81932 -36.30892 -35.86678 -33.64981 -31.42585 -30.35391 -27.57537 -26.76743 -25.10584 -23.59781 -22.14894 -20.45146 -19.31930 -18.54691 -17.92702 -17.18055 -16.43422 -16.39545 -16.18412 -15.85032 -15.60699 -14.51680 -14.47224 -14.29095 -13.58047 -13.52218 -13.43688 -13.01271 -12.43754 -12.27505 -11.90066 -11.73261 -11.30515 -11.05088 -11.01072 -10.67556 -10.55494 -10.16152 -10.11045 -9.74071 -9.62719 -9.26593 -9.12926 -8.41361 -8.31122 -6.04061 -4.09806 -0.00379 0.66174 1.32643 2.06341 2.45516 2.75351 2.86638 3.07971 3.28417 3.34946 3.36882 4.20567 4.40680 4.70291 4.88951 4.94839 5.02199 5.26613 5.30591 5.31286 5.69980 5.90999 5.96756 6.04315 6.13567 6.57489 6.95487 7.53410 7.60050 7.63325 7.70673 7.95239 8.19075 8.34761 8.97565 9.54566 11.06736 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.049495 B = 0.003147 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.572571 B = 8893.939876 C = 9433.732001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.531 5.531 3 C 0.499 3.501 4 O -0.449 6.449 5 C -0.121 4.121 6 C 0.035 3.965 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.059 3.941 10 N -0.887 5.887 11 Si 0.894 3.106 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.305 3.695 16 N -0.493 5.493 17 C 0.190 3.810 18 C -0.349 4.349 19 C 0.569 3.431 20 O -0.512 6.512 21 O -0.506 6.506 22 S 0.188 5.812 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.105 0.895 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.262 0.738 31 H 0.193 0.807 32 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.493 -21.093 -0.003 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.261 5.261 3 C 0.286 3.714 4 O -0.314 6.314 5 C -0.162 4.162 6 C -0.003 4.003 7 C -0.569 4.569 8 H 0.076 0.924 9 C -0.143 4.143 10 N -0.526 5.526 11 Si 0.722 3.278 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.198 1.198 15 C -0.059 4.059 16 N -0.214 5.214 17 C 0.028 3.972 18 C -0.472 4.472 19 C 0.413 3.587 20 O -0.402 6.402 21 O -0.317 6.317 22 S 0.441 5.559 23 H 0.098 0.902 24 H 0.096 0.904 25 H 0.124 0.876 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.209 0.791 32 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -9.317 -20.322 0.001 22.356 hybrid contribution 0.574 0.115 0.008 0.585 sum -8.743 -20.207 0.008 22.017 Atomic orbital electron populations 1.22257 0.76165 1.05192 1.04205 1.46043 1.08090 1.02471 1.69492 1.22346 0.89200 0.84526 0.75308 1.90812 1.13721 1.85556 1.41318 1.22019 1.00949 0.90166 1.03029 1.18970 0.93134 0.89209 0.98951 1.21137 0.92918 0.90740 1.52065 0.92448 1.25027 0.94837 0.99321 0.95121 1.69996 1.06088 1.26798 1.49670 0.86566 0.79737 0.83374 0.78120 1.20617 1.21170 1.19839 1.24572 0.91768 0.92826 0.96732 1.66567 1.08478 1.24049 1.22295 1.22524 1.01341 0.83610 0.89764 1.24443 0.96727 0.95273 1.30787 1.18886 0.82537 0.85199 0.72108 1.90975 1.22325 1.79476 1.47435 1.85028 1.38336 1.21871 1.86434 1.83795 1.06756 0.95510 1.69825 0.90169 0.90421 0.87618 0.89399 0.89428 0.95587 0.95567 0.92796 0.79064 0.72980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 9.92 59.84 0.59 1.13 16 2 N -0.53 -7.49 3.06 -124.89 -0.38 -7.87 16 3 C 0.50 9.26 7.63 -10.99 -0.08 9.18 16 4 O -0.45 -10.46 14.58 5.56 0.08 -10.38 16 5 C -0.12 -2.23 4.19 -27.89 -0.12 -2.35 16 6 C 0.03 0.89 4.26 -27.88 -0.12 0.77 16 7 C -0.53 -14.35 9.11 -34.44 -0.31 -14.66 16 8 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 11 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 15 C 0.30 4.41 7.66 -87.53 -0.67 3.74 16 16 N -0.49 -8.34 8.56 -14.63 -0.13 -8.47 16 17 C 0.19 2.65 11.15 -18.49 -0.21 2.44 16 18 C -0.35 -4.26 6.51 -36.92 -0.24 -4.50 16 19 C 0.57 6.43 8.26 33.90 0.28 6.71 16 20 O -0.51 -7.00 17.60 -19.40 -0.34 -7.34 16 21 O -0.51 -4.02 13.44 -41.11 -0.55 -4.57 16 22 S 0.19 1.97 21.50 -107.50 -2.31 -0.34 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.08 0.48 7.02 -51.93 -0.36 0.11 16 25 H 0.11 0.78 6.43 -51.93 -0.33 0.45 16 26 H 0.09 1.42 8.11 -51.93 -0.42 1.00 16 27 H 0.09 1.40 7.40 -51.93 -0.38 1.02 16 28 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 29 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.19 2.34 8.06 -52.49 -0.42 1.92 16 32 H 0.41 1.35 8.98 45.56 0.41 1.76 16 LS Contribution 303.41 15.07 4.57 4.57 Total: -1.00 -36.81 303.41 -6.64 -43.45 By element: Atomic # 1 Polarization: -0.73 SS G_CDS: -2.32 Total: -3.06 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -0.97 Total: 4.04 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.23 Total: -42.34 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.81 Total: -22.30 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.31 Total: -0.34 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -36.81 -6.64 -43.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605958109.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.658 kcal (2) G-P(sol) polarization free energy of solvation -36.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds