Wall clock time and date at job start Tue Mar 31 2020 05:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99616 * 2 1 4 4 H 1.48501 * 109.47227 * 269.99699 * 3 2 1 5 5 H 1.48496 * 109.47434 * 30.00131 * 3 2 1 6 6 H 1.48507 * 109.46769 * 150.00233 * 3 2 1 7 7 C 1.37875 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99999 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00024 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47263 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47263 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99854 * 359.72154 * 11 10 9 13 13 O 1.34234 * 119.99997 * 179.97438 * 11 10 9 14 14 C 1.45199 * 116.99947 * 179.72219 * 13 11 10 15 15 C 1.50697 * 109.46937 * 179.97438 * 14 13 11 16 16 C 1.33866 * 124.51724 * 90.00301 * 15 14 13 17 17 C 1.37409 * 115.11030 * 179.97438 * 16 15 14 18 18 C 1.36760 * 113.28888 * 0.02562 * 17 16 15 19 19 C 1.46390 * 125.46277 * 180.02562 * 18 17 16 20 20 O 1.21632 * 119.99882 * 359.97438 * 19 18 17 21 21 O 1.34895 * 119.99934 * 179.97438 * 19 18 17 22 22 S 1.70617 * 124.52245 * 269.69873 * 15 14 13 23 23 H 0.97000 * 120.00437 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47201 * 59.99291 * 9 7 2 25 25 H 1.09001 * 109.46880 * 299.99708 * 9 7 2 26 26 H 1.09001 * 109.47602 * 59.99522 * 10 9 7 27 27 H 1.09001 * 109.46922 * 299.99667 * 10 9 7 28 28 H 1.08997 * 109.46967 * 299.99772 * 14 13 11 29 29 H 1.09002 * 109.46640 * 59.99976 * 14 13 11 30 30 H 1.08000 * 122.44064 * 359.94034 * 16 15 14 31 31 H 1.07997 * 123.35541 * 179.97438 * 17 16 15 32 32 H 0.96700 * 117.00146 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0018 11 6 1.4918 -4.9671 0.0025 12 8 0.2836 -4.9671 0.0070 13 8 2.1630 -6.1296 0.0031 14 6 1.3722 -7.3474 0.0100 15 6 2.2902 -8.5424 0.0090 16 6 2.7573 -9.1411 1.1115 17 6 3.5817 -10.2170 0.8861 18 6 3.7757 -10.4807 -0.4417 19 6 4.6017 -11.5623 -0.9810 20 8 5.1852 -12.3163 -0.2258 21 8 4.7158 -11.7226 -2.3155 22 16 2.8670 -9.3175 -1.3972 23 1 -0.4851 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8713 -3.6039 0.8922 27 1 2.8725 -3.6047 -0.8877 28 1 0.7471 -7.3696 0.9026 29 1 0.7397 -7.3748 -0.8774 30 1 2.5050 -8.8026 2.1056 31 1 4.0322 -10.7962 1.6785 32 1 5.2726 -12.4505 -2.6243 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608179878.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:24 Heat of formation + Delta-G solvation = -155.577780 kcal Electronic energy + Delta-G solvation = -18449.995928 eV Core-core repulsion = 15081.231717 eV Total energy + Delta-G solvation = -3368.764211 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.060 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.47981 -40.12458 -38.27561 -36.47241 -36.17722 -33.63842 -31.87679 -31.06043 -27.91864 -26.01615 -24.18131 -22.86801 -22.16137 -19.93080 -19.55833 -19.04005 -17.68841 -17.46975 -16.63248 -16.33596 -16.05820 -15.95005 -15.58961 -14.66278 -14.49709 -13.95454 -13.56139 -13.47156 -13.08334 -12.78898 -12.29423 -12.25599 -12.18161 -11.97779 -11.37131 -11.25041 -11.07504 -10.98972 -10.67506 -10.56220 -10.09989 -10.07262 -9.68426 -9.27592 -9.18355 -8.94956 -8.41213 -6.05022 -4.10134 -0.11274 1.01300 1.50540 1.75717 2.52152 2.57719 2.69949 3.11687 3.29576 3.36136 3.39044 4.30072 4.42357 4.71877 4.77847 4.93155 5.11488 5.15861 5.30578 5.50893 5.61168 5.69647 5.91344 5.99861 6.05582 6.12797 6.51752 6.81671 7.42097 7.62006 7.67958 7.93710 8.15743 8.32827 8.96866 9.54256 11.05947 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.039577 B = 0.002601 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.315530 B =10763.796882 C =10987.132086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.102 4.102 11 C 0.458 3.542 12 O -0.502 6.502 13 O -0.360 6.360 14 C 0.130 3.870 15 C -0.197 4.197 16 C -0.135 4.135 17 C -0.038 4.038 18 C -0.274 4.274 19 C 0.562 3.438 20 O -0.508 6.508 21 O -0.512 6.512 22 S 0.282 5.718 23 H 0.262 0.738 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.153 0.847 31 H 0.158 0.842 32 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.270 -22.962 -2.307 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.140 4.140 11 C 0.302 3.698 12 O -0.388 6.388 13 O -0.279 6.279 14 C 0.054 3.946 15 C -0.317 4.317 16 C -0.166 4.166 17 C -0.073 4.073 18 C -0.392 4.392 19 C 0.405 3.595 20 O -0.398 6.398 21 O -0.325 6.325 22 S 0.553 5.447 23 H 0.072 0.928 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.171 0.829 31 H 0.176 0.824 32 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 6.417 -22.502 -3.557 23.668 hybrid contribution 0.839 0.138 1.436 1.669 sum 7.255 -22.364 -2.121 23.607 Atomic orbital electron populations 1.69988 1.06103 1.26823 1.49860 1.25021 0.94863 0.99364 0.95069 0.86536 0.79770 0.83182 0.78157 1.20580 1.21168 1.19771 1.21142 0.93089 0.90593 1.51913 0.92275 1.19032 0.93216 0.89249 0.98943 1.21804 1.00726 0.87279 1.04179 1.24882 0.88024 0.85374 0.71536 1.90650 1.15804 1.87483 1.44908 1.86656 1.41830 1.14342 1.85071 1.21135 0.90263 0.78955 1.04236 1.24195 1.05873 1.02493 0.99122 1.20038 0.99650 0.96703 1.00179 1.20763 0.95805 0.96064 0.94634 1.23543 1.12189 1.05368 0.98145 1.19281 0.78018 0.82035 0.80170 1.90955 1.45009 1.44317 1.59514 1.84597 1.68205 1.55643 1.24028 1.83336 1.37456 1.18653 1.05264 0.92807 0.95550 0.95534 0.88779 0.88809 0.88936 0.89890 0.82936 0.82444 0.72226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 7 C -0.53 -14.54 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.84 4.26 -27.89 -0.12 0.72 16 10 C -0.10 -2.01 5.75 -27.89 -0.16 -2.17 16 11 C 0.46 8.56 7.96 36.01 0.29 8.84 16 12 O -0.50 -10.85 15.73 -18.75 -0.29 -11.14 16 13 O -0.36 -5.58 10.20 -39.27 -0.40 -5.98 16 14 C 0.13 1.60 5.89 36.00 0.21 1.81 16 15 C -0.20 -2.07 5.92 -35.85 -0.21 -2.28 16 16 C -0.13 -1.26 9.99 -41.42 -0.41 -1.68 16 17 C -0.04 -0.35 10.01 -40.42 -0.40 -0.76 16 18 C -0.27 -2.70 6.45 -36.84 -0.24 -2.94 16 19 C 0.56 5.53 8.30 34.01 0.28 5.82 16 20 O -0.51 -6.23 17.63 -19.37 -0.34 -6.57 16 21 O -0.51 -3.57 13.29 -41.02 -0.55 -4.11 16 22 S 0.28 2.66 22.87 -107.50 -2.46 0.20 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 24 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 25 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 26 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 27 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 28 H 0.09 1.08 8.13 -51.93 -0.42 0.65 16 29 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16 30 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.42 0.91 9.11 45.56 0.42 1.33 16 LS Contribution 313.00 15.07 4.72 4.72 Total: -1.00 -34.11 313.00 -7.29 -41.40 By element: Atomic # 1 Polarization: -0.34 SS G_CDS: -2.50 Total: -2.84 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -1.18 Total: -5.92 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.92 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -1.58 Total: -27.80 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -2.46 Total: 0.20 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.11 -7.29 -41.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608179878.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.175 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds